| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,107,793 | A→C | 18.3% | V454G (GTG→GGG) | speC ← | ornithine decarboxylase, constitutive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,107,793 | 0 | A | C | 18.3% | 108.8 / 4.0 | 66 | V454G (GTG→GGG) | speC | ornithine decarboxylase, constitutive |
| Reads supporting (aligned to +/- strand): ref base A (25/25); new base C (3/12); total (28/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.23e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAACAGAATGGAGTTGAGAT‑CGCACTTCTCCGGCACAATGCCGTTCTCACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCGGATAGAAAGGGCTGGTAGAAGCATGGA > NC_000913/3107555‑3108006 | aaaCAGAAGGGGGTTGGGATGCGC‑TTTCTTCGGGGCAATGCCGTTCTGCCGGCGGTGGTGCGCCAGAATCGGCGGCGGAAGGCCAAAGTCGCTATATTCGCCGGGTTCGGCATCGATACCTGGTGTAGTGAGTAACTGCTTGCACGGATCAACAAAATACTGATCCGCGGCATGTCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAaca < 2:79985/239‑1 (MQ=255) aaTGGAGTTGAGAT‑CGCACTTCTCCGGCACAATGCCGTTCTCACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAacaccgga > 1:766398/1‑234 (MQ=255) aT‑CGCACTTCTCCGGCACAATGCCGTTCTCACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGCCGGTCGCT‑GGGTAACACTGATGTGGGGTAATccc > 1:397981/1‑238 (MQ=255) cccccctcccgggcaaagctccGTCCCCACGAAGAAAGGCCCCCAGACTCGTCGCCGGAACGCAAAAGTCGCTATATTCGCCGGTTTCGGCATAGATACCGGGTGTAGTGAGTACCAGCTGGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTTCCACTTCGCCCCCGGCTCAAAACGG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑Gc < 2:990959/219‑1 (MQ=255) gCACTTCTCCGGCACAATGCCGTTCTCACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AACAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGGTAATCCT‑Gc > 1:767621/1‑238 (MQ=255) gCACTTCTCCGGCACAATGCCGTTCTCACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑TGCGAACACTGATGTCGGATAATCCT‑Gc > 1:294041/1‑238 (MQ=255) tGCCGTTCTCACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAACGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGCACGTCCCT‑TGCTAACACGTAAGTCCGTTATTCCT‑GCCCCACTTTGCCATcaaca > 1:497940/1‑239 (MQ=255) tGCCGTTCTCACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCCCCCCCGGCCCAAAACTG‑AAAAAACGGCGGGCCCC‑GGCCAAACCCTCTGTCGGGTAATCCT‑GCCACAAATTTCCacccaaa > 2:1072318/1‑233 (MQ=255) tcccACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAAcggg < 1:745743/235‑1 (MQ=255) ctcACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGCCGGTCGCT‑TGCTTACACTGATGTCGGATAATCCT‑GCCCCAATTTGCCATCAACAAcggggc > 1:1082218/1‑237 (MQ=255) agggcgcAAGAATCGGCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACggg < 1:790283/236‑1 (MQ=255) aGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGCCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCCCACTTTGCAATCAACAACGGGCGGGGTAAACcgg > 1:950915/1‑239 (MQ=255) gccaagatgctccccGGAACCCCAAAGGCGCTTTTTTCGCCGTTTTCGGCATCGATCCCTGGTGTAGTGAGGAACAGCTTGCCCGGACCAACAAAATACTGATCCGCGGCATATCCTCCAAAGCCGGCCCACTGCGCCCCCGGCTAAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGa < 2:397981/225‑1 (MQ=255) cccaggacgcgcccaggAACCCCAAAGGCCATTTTTGCGCCGTTTTCGGGATCGATCCCGGGTGTAGTGAGTAACAGCGTGCACGGACCAACAAAATCCTGACCCGTGGCAATCCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGGGGTCGCT‑GGCTAACACTGAGGTCGGATAACCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGa < 2:766398/223‑1 (MQ=255) ccAGAATGCTCGCCGGAACGCCAAAGTCGTTATTTTCCCCGGTTTCGGCATCGATCCCTGGTGTAGTGAGTAACAGCTTGCCCGGACCAACAAAATACTGACCCGCGGCATAGCCTTCAAAGCCGGGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAAc < 2:511701/239‑1 (MQ=255) tcgtcgCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGCACCG‑GGCCAACACCGAGGTCGGGTAAACCT‑TCCCCAATTTTCCCCCAACAACCGCCGGGAGAAACGGGGGGaaaaactga > 2:934242/1‑232 (MQ=255) gCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGAGAATCCT‑GCCCCAAATTGCCATCAACAACGGGCGGGGTAAACGGGCGGGAACGCTTAAAgc > 1:892711/1‑238 (MQ=255) aaaggctcttgttggtgcgttttCGGTATCGATACCTGGTGGAGGGAGTAACAGCTTGAACGAAAAAAAAAAAGACTGTGCCGCGGGGTAACCTCCAAAGCGGGGCCAGTCCTCCCCCGTGTCAAAACAG‑AAAAACCGGCGGTGACC‑GGCTAACACTGATGGCGGATAATCCT‑GCCACAATTTGACATCAACAACGAGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAg < 2:340967/219‑1 (MQ=255) gtttttttCGCCGGTTTCGGCAGTGGTCCCTGGTGTAGGGATTAACAGCTTGCCGGGATCAACAAAATACTGCTCCGCGGCATACCCGTCAACGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTgc < 2:791281/233‑1 (MQ=255) tataTTCGCCGGTTTCGGCATCGATACCTGGTGTAGGGAGTACCAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACCCTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTgcgc < 1:106632/239‑1 (MQ=255) tagatTCGCCGGTTTCGGCATCGATCCCTGGTGTAGGGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTgcg < 1:641629/235‑1 (MQ=255) ccGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACAATGATGTCGGATAATCCTGGCCAC‑ATTTGCCATCCAACACGGGAGGGGTAAAAAGGCGGGACAACTCAAAGACCGCAAGaaaaaccacagtcgcttaca > 2:106632/1‑220 (MQ=255) ggttttCGGAGTCGTTTCCTGGGTTAGTGAGTAACGTGTTGCAGGGAACAACAAAATACTGGTCCGCGGCAAATCCTTAAAAGCCGGGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATc < 2:294041/236‑1 (MQ=255) gtttcggacacatttccTGGTTTGGTGGGTAACAGCTTGCCCGGATCAACAAAATCCGTCTCCGGGGAAATTCCTTCAAAGCCGGGCCCCTTCGCCCCCGGCTCAAAACAG‑AAAAACCGGCGGTCGAT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATccc < 2:813930/224‑1 (MQ=255) tCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAACTTACATCACGCAAAGAAAGCCTTTCGCGCTTCCAACCCTa > 1:908171/1‑238 (MQ=255) cGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGACGCT‑GGCCAACACTGATGTCCGGAAATCCT‑GCCCCAAATTGCCCTCCAAAACGGGCGGGGTAAAAGGGCGGAACAACCTAACGCGCCCCAAAAAAACCTTTCGCGCTTCCATCCCAAttccacaa > 2:819351/1‑232 (MQ=255) gATGCCGGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGGTCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑Aacac < 1:696236/239‑1 (MQ=255) aCCTGGTGTAGTAAGTAACAGTTTGCACGGATCAACAAAATACTGGTCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCACGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACt < 1:209816/239‑1 (MQ=255) gtgttgatgacaaGCTTGCACGGACCAAAAAAATACTGAGCCGCGGCATATCCTTCAAAGCCGTTCCACTTCGCCCCCGGATCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTGGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCca < 2:246688/227‑1 (MQ=255) tAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGAGCCGCGGATTATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTAAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCca < 1:230829/238‑1 (MQ=255) tGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGTGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTTCGCGCTTCAATCCCTATCTC‑CACACACCCGACCCACAg > 1:731461/1‑238 (MQ=255) gAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GGCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑CACACACTCAGCCCACAccc > 1:258966/1‑239 (MQ=255) aGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAAACCTGTTGTCGGATAATCCT‑GCCACAATTTGCCCTCAACAACCGGCGGGATAAAAGGGCGGCACAGCTTAAAGCGCGCAAGAATAGCCCTGCCGCCCTCAATCCCCATCTC‑AAAACACCCAACCcaccacc > 2:662358/1‑234 (MQ=255) aGTAACAGCTTGCACGGAAAAACAAAATCCTGACCCGCGGCATACCCTTCAAAGCCGGGCCCCTTCGCCCCCGGCTCAAAACGG‑AAAAAACGGCGGTCGCT‑GGCTAACCCTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTa < 2:523852/214‑1 (MQ=255) tAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACCCTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGCGGGGGTAAACGGGCGGAACAGCTTACCACGCGCACGAAAAGCCCTGTGCGCCTCAACCCCCACCTCAAACACACCCACCCCACACCCg > 2:725771/1‑238 (MQ=255) tAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑Aac < 1:1025641/219‑1 (MQ=255) aCAGCTTGCCCGGAACAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGTGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGc < 1:217448/239‑1 (MQ=255) gCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTCACACTGATGTCGGATAATCCT‑GCCCCAATTTGCCATCCACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCACGCAAAAAAAACCTTTCCGGCCTCAATCCCAAACTC‑Cacacaccaaccccccaaccccccccc > 2:798445/1‑218 (MQ=255) tGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACACCCCGCCAGAAAAGCCTTGCGCCCTTCAACCCCTATCTC‑Aacacacctgccccttataaacatccccga > 1:523852/1‑215 (MQ=255) cACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑CACACACTCAGCCCCCAGCCGCCCCCCCcttc > 1:974858/1‑236 (MQ=255) aCGGATCAACAAAATACTGATCCGCGGCATATCCCTCAAAGCCGTGCCACTTCGCCCCCGGCTAAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTcc < 1:387315/239‑1 (MQ=255) aacaaAAAACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCAt < 1:1072318/239‑1 (MQ=255) caaAATACTGATCCGCGGGATATCCTTCAAAGCCGTGCCACTTCCCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACCCGGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGcc < 1:977797/222‑1 (MQ=255) tACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGGTAAACGGGCGGAACAGCTTAAAGCGCGCAAGAAAAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACCCCCCCCCCCCCCCTCCTCAA‑tttt > 1:133068/1‑239 (MQ=255) tACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGAAAATCCT‑GCCACAATTTGGCATCAACAACGGGCGGGATAAACAGGCGGAACAGCTTACAGCCCGCCAGAATAGCCCTGCGCGCTTCAATCCCTCACCC‑AACACACCCAACCCCCAACCCACACCCCCCCCCCCCCTCCTGaaaatt > 2:629831/1‑235 (MQ=255) tGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACCGATGTCGGGTAATCCT‑GCCACCATTTGCCCTCAACAACGGGCCGGCTAAACGGGCGGAACACCCTACAACCCGCAAGAACACCCTTTCACGCTCCAACCCCTCTCTC‑AACCCACTCACCACCCACCCCGCGCCCCCCCCCCCCCTCATCAA‑tttttgg > 2:374554/1‑236 (MQ=255) gctCCGCGGCATATCCTGCAAAGCGGGGCCCCTTCCCCCCCGGCTAAAAACGG‑AAAAAACGGGGGGCGAT‑GGCTAAATCTGAGGGCGGATAAACCT‑GCCACAAGTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTGGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCg < 2:951100/237‑1 (MQ=255) gATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCCCAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAACTTACAGCGCGCAAAAAAAGCCCTGCGCGCTTCAATCCCTATCTC‑AACACACCCCGCCCCCACCCGCCCCCCCCTCCCCCCCTCACTAA‑TTTTgcgg > 2:747028/1‑236 (MQ=255) aTCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGCTAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGGTAAACGGGCGGAAAAGCTTACAGCCCGCCAGAAAAGCCTTGCGCGCTTCAAACCCCATCTC‑AACACACCCACCCCCCAGCCCACCCCCCCCCCCCCCCTCATAAA‑TTTTGGGGt > 2:543009/1‑239 (MQ=255) aTCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAAAGGGCGGAAAAGCCTACAGCCCGCAAAAATAGCCTTGCGGGCTTCAATCCC‑ATTTCTAACACCCACAGCCAACAACCCAccccccccccccccccctcccctttaaaaca > 2:977797/1‑222 (MQ=255) aTCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑CGCCAAAACTTATGTCGGATAATCCT‑GCCCCAATTTGCCATCAACAACGCGCGGGGTAACCGGGCGGGACACACTACAACGCCCCAGAATAACCTTTCCGCCTTCAATCCCCACCTC‑AACACCACCAACCCACACCCGCCCCCCCTTCTcctttaaccaactcgaaccc > 2:949551/1‑220 (MQ=255) ccgccgctttcccccaaaaCCCGGGCCCCTCCCCCCCCGGACAAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACCCTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTa < 2:599872/223‑1 (MQ=255) cgGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCACGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCCTGAA‑TTTTTGCGTTAAc > 1:592863/1‑238 (MQ=255) caattCCTTCAAACCCGTGCCGCTTCGCCCCCGGCTCAAAACTA‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATc < 1:819351/234‑1 (MQ=255) cATATCCCTCAAAGCCGTGCCACTCCCCCCCCGGCCAAAAACTG‑AAAAACGGGCGGGCGCT‑GGCTAACACTGATGTCGGAAAACCCT‑GCCACAATTTGCCATCAAAAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATc < 2:1082218/238‑1 (MQ=255) ccTTCAAAGCCGTGCCACTTCGACCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGGT‑GGCTAACACTGAGGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTgc < 1:374554/239‑1 (MQ=255) cTTCCAACCCGGCCCCCTTCCGCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GTCTAACCTTGATGTCGGAAAACCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTgca < 2:767621/239‑1 (MQ=255) cTTCAAATCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTgca < 1:320414/239‑1 (MQ=255) cgggCCACTTCGCCCCCGGCTAAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGGCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACa < 1:975320/234‑1 (MQ=255) gCCACTTCGCCCCCGGCTCAAAACTG‑AAAAACCGGCGGTCGCT‑GGCTAACCCTGATGCCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCgg < 1:158314/238‑1 (MQ=255) cGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTTACACTGATGTCGGATAATCCT‑GCCACAATTTGCCCTCAACAACGGGCGGGATAAACGGGCGGAACAGCCTAAAGCCCGCCAAGATAGCCTTGCGCGCATCCATCCCCTTCTC‑CACACACTCAGCCCACAGCCTACCCCCACCGTTCCCCTCATTAATTTTTCGCGTT‑ACATACAGGTGCAGAAAACcgcgaaaaaaaa > 2:365524/1‑231 (MQ=255) ccccgGGCT‑AAAACTGAAAAAAACGGCGGCGGTG‑GGATAACCCGGAGGCCGGATAACCCT‑GCCAAAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAAACCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCGGATAGAAAggg < 2:133068/239‑1 (MQ=255) cccccGGTTCAAAACGA‑AAAAAACGGGGGT‑GCTGGGATAAACCGGATGGCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGATTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCGGATAGAAAggg < 2:1045789/239‑1 (MQ=255) cccccGGCTCAAAACTA‑AAAAACCGGCGGTCGCG‑GGCTAACCCGGAGTTCGGATAACCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCGGATAGAAAggg < 2:908171/239‑1 (MQ=255) ccccGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACCCTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCGGATAGAAAGGGc < 1:662358/239‑1 (MQ=255) aaCTG‑AAAAACCGGGGCGCGCT‑GGCAAACACGGATGTGGGGTAACCCT‑GCCACAATTTGCCATAAACAACGGGCGGGAAAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCGGATAGAAAGGGCTGGTAGAAGCa < 2:974858/239‑1 (MQ=255) accgcaaaaaaCGGCCGTCGCT‑GGTTAACCCGTTTGTAGGAAAGTCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTTGCTC‑AACCCACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCGGATAGAAAGGGCTGGTAGAAGCa < 2:497940/234‑1 (MQ=255) g‑AAAAAACGGCGGTCGCT‑GGCTAACCATGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACCACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCGGATAGAAAGGGCTGGTAGAAGCATGGa < 1:629831/239‑1 (MQ=255) | AAACAGAATGGAGTTGAGAT‑CGCACTTCTCCGGCACAATGCCGTTCTCACGCAGATAGTGCGCCAGAATCGTCGCCGGAACGCCAAAGTCGCTATATTCGCCGGTTTCGGCATCGATACCTGGTGTAGTGAGTAACAGCTTGCACGGATCAACAAAATACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTG‑AAAAAACGGCGGTCGCT‑GGCTAACACTGATGTCGGATAATCCT‑GCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTC‑AACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAA‑TTTTGGCGTTAACATCCA‑GTGCAGCAAACAGCGGATAGAAAGGGCTGGTAGAAGCATGGA > NC_000913/3107555‑3108006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |