Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,460,836	T→C	11.4%	L341P (CTC→CCC)	gspF →	general secretory pathway component, cryptic

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,460,836	0	T	C	11.4%	228.7 / 2.4	97	L341P (CTC→CCC)	gspF	general secretory pathway component, cryptic
Reads supporting (aligned to +/- strand):  ref base T (44/38);  new base C (9/6);  total (53/44)
Fisher's exact test for biased strand distribution p-value = 7.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTAACAGCGCACGCTATCTCCGCACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACTGGAAATTATGG  >  NC_000913/3460599‑3461069                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          ttAACAGCGCACGCTATCTCCGCACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GCCGAAAAAAGCGGGCAGCTc                                                                                                                                                                                                                                          >  1:814776/1‑239 (MQ=255)    aacccccccgttttttcCCCACTTTAAGTTTTTTCGCACCCCACGGGCCCCCCTCT‑GGTGGAGGGGTTGATT‑TTCCCCACCAAAACCCACAACCCCTGAAAAACCCGCCGGCGCCGGGCAAAGGGGGCAGAGAACTTCCGCCAGGG‑TACCAGTTTT‑CATT‑TTT‑CGCTGGAAAAAACCGA‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCgg                                                                                                                                                                                                                                        <  2:191350/224‑1 (MQ=255)        cgcACGCTATCTCCGCACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGACAGTTCGCCAAGG‑GAACACCATT‑AAAC‑TTT‑CCCTGGAACAAACCGC‑AAATT‑T‑CCCGCCGATGAAGCT‑CCAAATGTCGGCCTTT‑GGCCAAAAAAACGGGCACCCCggaccca                                                                                                                                                                                                                                   >  2:382256/1‑234 (MQ=255)         gccgtttgtctcCGCTTTTTTAGATTTTT‑GCAGCCCAGGCTCGT‑CCTCT‑GGTGGGTGGTGAGAATGTGGTCCCCCGAAACCCTAACCACCCTAGAATTCCCCCAGGGTCTGAAAAAGGCGGAAGGGACCTTCCGCGA‑GG‑TAACGACTTT‑CCTT‑TTTCCGGTGGAAAAACCCGC‑ATTTT‑C‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGca                                                                                                                                                                                                                                      <  2:171478/227‑1 (MQ=255)         gcACGCTATCTCCGCACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGACCAAAACGC‑AATTT‑T‑CCCGCCGCTGATGCC‑CTACATGGGGGCCCCT‑GGCGAAAAAAGCGGGCACCCGGGCACAta                                                                                                                                                                                                                                  >  2:297851/1‑238 (MQ=255)         gcACGCTATCTCCGCACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGGTGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCACCTCGGCACAtt                                                                                                                                                                                                                                  >  2:840025/1‑239 (MQ=255)         gcACGCTATCTCCGCACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCC‑CTACATGGTGGCCCCT‑GGCGAAAAAAACGGGAAACTCGGCAAAta                                                                                                                                                                                                                                  >  2:173566/1‑238 (MQ=255)          cACGCTATCTCCGCACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CAAC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAACCGGGCAGCCCGGCACtttc                                                                                                                                                                                                                                 >  1:218585/1‑238 (MQ=255)                     cGCACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCACCCCGGCACATAAAAGGGCagag                                                                                                                                                                                                                       >  2:559459/1‑238 (MQ=255)                       cACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGCAAAAAGCGGGCACCCCGGCCCATTAATGGGCAGAGCCg                                                                                                                                                                                                                    >  2:292836/1‑239 (MQ=255)                       cACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCCGCTCGGCCCATTAATGGGCacggcc                                                                                                                                                                                                                     >  2:623326/1‑233 (MQ=255)                         cTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCGAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTCCATGGTGGCCTCT‑GGCGAAAAAAACGGGCACCCCGGCACATTAATGGTCAAAGCCGCa                                                                                                                                                                                                                  >  2:977914/1‑239 (MQ=255)                          tttAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAg                                                                                                                                                                                                                 >  1:132912/1‑239 (MQ=255)                           ttAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGa                                                                                                                                                                                                                >  1:357073/1‑239 (MQ=255)                            taattttttc‑GCAATCCAGGGGCCTCCCTCG‑GCTGGATGGGATGAAT‑TTGCCCACCGAAAGCCTCAACACCCTCAAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGAt                                                                                                                                                                                                               <  1:173566/233‑1 (MQ=255)                            tAAGTTTTTT‑GCAACCCGGGGGCGT‑CCTCTGGCGGGGTGGGATTAAT‑TTGCCCACCGAAAGCCTCAACACCCTCGAAATCCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑AAACAGCATT‑CATC‑TTT‑CGCTGGAACAACCCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGAt                                                                                                                                                                                                               <  1:559459/239‑1 (MQ=255)                            tAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGACATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTAAAAACCGCCGAt                                                                                                                                                                                                               >  2:96407/1‑239 (MQ=255)                                  tttt‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCACCTCGGCCCATTAATGGTCAGAGCCGccaaaaacaag                                                                                                                                                                                                         >  2:999866/1‑229 (MQ=255)                                    tt‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCTGCTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCCCGGCACATTAATGGTCAGAGCCGCAGATAACCAgg                                                                                                                                                                                                        >  1:571877/1‑239 (MQ=255)                                    tt‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGGCAGAGCCGCAGATAACCAGga                                                                                                                                                                                                       >  1:1039971/1‑239 (MQ=255)                                    tt‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGACGCT‑CTACATGTTGGCCTCT‑GGCGAAAAAAGCGGGAAGCTCGGCACATTATTGGTCAGAGCCGCAACTAACCAgca                                                                                                                                                                                                       >  1:312033/1‑237 (MQ=255)                                           tCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCCGATAACCAGgaga                                                                                                                                                                                                     >  1:937700/1‑235 (MQ=255)                                           tCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGacac                                                                                                                                                                                                  >  1:805990/1‑238 (MQ=255)                                           tCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGAGGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGAAGCTCGGCACATTAATGGTAAGAGCCGCAGATAAACAGGGGacac                                                                                                                                                                                                  >  2:1022995/1‑238 (MQ=255)                                             cAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCCCT‑GCCGAAAAAACCGTGCAGCCCGGCCAATTAATGGTCAAAGCCGCAGATAACAAgaaaaaacccc                                                                                                                                                                                               >  2:478069/1‑229 (MQ=255)                                                       ccTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGTTAACCAGGAGACACTCCAACAAAATCg                                                                                                                                                                                     >  1:398180/1‑239 (MQ=255)                                                       ccTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACATTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCC‑CTACATGGTGGCCTCT‑GGCGCAAAAAGCGGGCAGCCCGGCCCATTAATGGCCCGAGCCGCCGAAAACCAGAAAACCCCCCACCAAAACCg                                                                                                                                                                                     >  2:472568/1‑239 (MQ=255)                                                          ct‑ggtgGAGGGGATGATT‑TTGCCCACCGAAAGCCACAACAACCGAGAAATTCGCCAGCGTCTGGCAATGGCGGCAGAGAACGTCCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAACCCGA‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGAt                                                                                                                                                                                  <  1:706008/239‑1 (MQ=255)                                                          ct‑gctgGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGa                                                                                                                                                                                   >  1:50310/1‑238 (MQ=255)                                                              ctgGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCg                                                                                                                                                                                >  1:411403/1‑238 (MQ=255)                                                                 gatgggatgAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCGGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCtt                                                                                                                                                                            >  1:860517/1‑239 (MQ=255)                                                                      gatgAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACAACCCAACAAAATCGGATCGCCTTAACg                                                                                                                                                                        >  1:495383/1‑238 (MQ=255)                                                                                gTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCATAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCACCt                                                                                                                                                              >  1:473114/1‑239 (MQ=255)                                                                                 tCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAAACACTCCACCCAAATCGGATCGCCTTAACGTTCTCCATCt                                                                                                                                                              >  1:689171/1‑238 (MQ=255)                                                                                      cGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGCCACATTAATGGTCAGAGCCGCAGATACCCAGGAGCAACTCCAACAAAATCGGATCGCCTTAACGGTCTCCAACTCCggg                                                                                                                                                         >  1:990806/1‑236 (MQ=255)                                                                                           gCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGACAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGGGACACCCCAACAAAATCGGATAGCCTTAAAACCCCACATCTTCGAGACCGCa                                                                                                                                                   >  2:478505/1‑239 (MQ=255)                                                                                             ccaaacaacCCAGAAATGCGCCGGCGTCGGGAAAAGGCGGCAGGGAACGTTGGCCAGGG‑TAACGGCATT‑CATC‑TTC‑CGGTGGAACAACCCGA‑AATTT‑C‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCCCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACt                                                                                                                                                 <  1:977914/236‑1 (MQ=255)                                                                                                aacaacCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAACACCGGGCAGCTCGGCACATTAATGGCCAGAGCCGCAGATAACAAGGGGACACTACAACAAAAACGGCTCGCCTTTACGCCCTCCCACTTCGAAcccgaccccct                                                                                                                                              >  2:589892/1‑230 (MQ=255)                                                                                                      cTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCGGATAACCAGAAGACACTCCACCAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTAc                                                                                                                                        >  2:928617/1‑239 (MQ=255)                                                                                                        cGAAATTCCGCAGCGTCTGGCAAGTGCGGCAGAGAACGTTCGCCGGGG‑TAACAGCTTT‑CCTT‑TTG‑CGGTGGAAAAACCCGA‑AATTT‑C‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGa                                                                                                                                      <  1:292836/239‑1 (MQ=255)                                                                                                                      ctggcacaaaggggagaagaaccGTTCGCGAGGG‑TAACAGC‑TT‑CCTCTTTT‑CGCGGGAACAACCCGC‑AATTT‑C‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTc                                                                                                                        <  1:704291/217‑1 (MQ=255)                                                                                                                       cttcgCAAATCCGGGCAAGACCCTTCGCCCGGGTTAACA‑CGTT‑CCTC‑TTG‑CGGCGGAACAAACCGC‑TATTTGC‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTc                                                                                                                        <  2:495383/235‑1 (MQ=255)                                                                                                                            cAAAGGCGGAAGAGACCGTTCCCCGGGT‑AAACAGCATT‑CATC‑TTG‑CGGTGAAACAAACCGA‑ATTTT‑G‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGtt                                                                                                                   <  1:999866/238‑1 (MQ=255)                                                                                                                                tGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGAAGACACTCCCACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTTTTACGATGGCACTGATCGCCCTGTTTAttt                                                                                                              >  2:676330/1‑238 (MQ=255)                                                                                                                                  ggggaagaaaccttgcccAGGG‑TAAAAACCTTCCATT‑TCT‑CGGTGGAA‑AAACCGCAAATTT‑G‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATtgt                                                                                                             <  1:714916/223‑1 (MQ=255)                                                                                                                                          gtttgtccgcgggg‑TAACTGCATT‑TTTT‑TTT‑GGCAGAAACAACCCGA‑ATTTT‑C‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCgg                                                                                                     <  2:411403/227‑1 (MQ=255)                                                                                                                                               tCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATTCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCCATAATCGCCCTGtttttcttcggtagggagctcc                                                                                               >  2:636947/1‑220 (MQ=255)                                                                                                                                                            cAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGCCGGTACTCCAACCGCttcttc                                                                                   >  1:116777/1‑239 (MQ=255)                                                                                                                                                            cAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACCCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCACCCCcttttta                                                                                   >  2:543311/1‑238 (MQ=255)                                                                                                                                                                 tt‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTACCGCTCTCCATCTTCGAGCCAGCACTCCTTATTACGATGGCACTGATCGTCCTGTTTATTTTCTTTTCGGTACTCCAAACTCTTCCTCaaata                                                                              >  2:478293/1‑236 (MQ=255)                                                                                                                                                                 tt‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACtt                                                                              >  1:86801/1‑239 (MQ=255)                                                                                                                                                                  t‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACCCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCTGGTCGGTACTCCAACCCCCACTTCAAATTa                                                                             >  2:2084/1‑239 (MQ=255)                                                                                                                                                                      tC‑TTT‑CGCGGAAACAACGCTG‑AATTT‑C‑CCCGCCGATTATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCACCAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACt                                                                          <  1:472568/239‑1 (MQ=255)                                                                                                                                                                        ttttgtcgcggAACAAACCCG‑AATTT‑TCCCCGCCGATGATGCT‑CTACTTGGGGGCCTCT‑GGCGAAAAAAGCGGGCAGGTCGGCACATTAATGGCCAGAGCCGCAGATAACCAGGGGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAAc                                                                           <  2:1062956/230‑1 (MQ=255)                                                                                                                                                                         ttt‑CGCGGGAACACCCCGT‑AATTT‑G‑CCCGCCGATGATGCT‑CTACATGGTTGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCa                                                                        <  1:840025/239‑1 (MQ=255)                                                                                                                                                                           t‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTAGGGCCGGTAACCCAACCTCTTTTTCAACTTAACTCAAt                                                                      >  2:472657/1‑239 (MQ=255)                                                                                                                                                                              ccgcaacaaaaCCCC‑AATTTCC‑CCCGCCGATGATGCT‑TTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGGGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATg                                                                     <  2:840957/231‑1 (MQ=255)                                                                                                                                                                                    acacacgcctttttt‑c‑CCCGCCCAGGATTCG‑CTCCATGGCGCCCTCT‑GGCGAAAAAAGCGGGCACCCCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGACCGCCTTAACGCTCTCCATCTTCGATCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGattaat                                                               <  2:860517/227‑1 (MQ=255)                                                                                                                                                                                    aaaaaCCGA‑AATTT‑C‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGattaatt                                                              <  1:904522/237‑1 (MQ=255)                                                                                                                                                                                     aaacacccaatttt‑t‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGattaatt                                                              <  1:297851/228‑1 (MQ=255)                                                                                                                                                                                       agccGA‑AATTT‑C‑CCCGCGGGTGATGCT‑TTACATGGTGGCCTCG‑GGCGAAAAAATGGGGCAGCCAGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACCCTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAg                                                           <  2:86801/237‑1 (MQ=255)                                                                                                                                                                                        aCCCC‑AATTT‑TGCCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCCCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAg                                                           <  1:645971/239‑1 (MQ=255)                                                                                                                                                                                          cggaaaTTT‑T‑CCCGCCGATGAGGCT‑CTACATGGTGGACTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGGTAACCAGGAGACACTCCAACAAAATCGGATCGGCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTACTTCAACTTAACTCAATGATTAATTAAGGa                                                         <  1:599225/235‑1 (MQ=255)                                                                                                                                                                                          cccaaaTTT‑C‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGa                                                         <  1:1022995/235‑1 (MQ=255)                                                                                                                                                                                          ccaattttt‑c‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGa                                                         <  2:24007/233‑1 (MQ=255)                                                                                                                                                                                          ccaaatttt‑c‑CCCGCCGATGATGCC‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGGCACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGa                                                         <  1:478293/233‑1 (MQ=255)                                                                                                                                                                                              aaTTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTACCTCAATGATTAATTAAGGAAAGc                                                     >  1:24007/1‑239 (MQ=255)                                                                                                                                                                                                       ccgcctgttgtgCT‑CTACATGGTGGCCGCT‑GGCGAAAAAAGCGGGCAGCTCGGCAACTGAATGGTCAGAGTCGCCTATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCCCTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCGTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATgcg                                              <  2:132912/229‑1 (MQ=255)                                                                                                                                                                                                          ccgATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATgcgcgc                                           <  1:433106/239‑1 (MQ=255)                                                                                                                                                                                                            gatgatGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCaa                                         <  1:623326/239‑1 (MQ=255)                                                                                                                                                                                                                       tACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCAAATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTcttctt                                                                                    <  1:526496/186‑1 (MQ=255)                                                                                                                                                                                                                         cATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACACCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCAAATGCGCGCAACGGATAAGCAAc                             >  1:773283/1‑239 (MQ=255)                                                                                                                                                                                                                          ttggtggCCCCT‑GGGGAAAAAAGCGGGCAGCTCGGCAAATTAATGGTCAGGGCCGCAGATAACCAGGAGACACCCCAACAAAATCGGAACGCCTTAACGCTCCCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCGCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAAcg                            <  2:510032/238‑1 (MQ=255)                                                                                                                                                                                                                          gtggtgg‑CTCTGGGCAAAAAAAGCGGGCCCCCCGGCACATTAAGGGTCAGAGACGCAGATAACCAGGTGACACTCCAACAAAATCGGATCGCCTTTACGCTCTCCATCGTCGAGCCAGCACTCATTATTTCGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAAcg                            <  2:218585/238‑1 (MQ=255)                                                                                                                                                                                                                          cgtggggCCTCT‑GGCGAAAAAAGGCGGCCGCCCGGCACATTAATGGTCAGACCCTCAGATAACCAGGAGACCCTCCAACAAAATCGGATCGGCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTATTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAAcg                            <  2:416484/234‑1 (MQ=255)                                                                                                                                                                                                                          aTGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAAcg                            <  1:676330/239‑1 (MQ=255)                                                                                                                                                                                                                            ggtggCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGCAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGCCCTGTTTATTGTCGTGTCGGCACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCAAATGCGCGCACCgggaaaacaaaccg                          >  2:22701/1‑227 (MQ=255)                                                                                                                                                                                                                              tggCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACAtt                                                                                                                                                                                                                                  >  1:108870/1‑37 (MQ=255)                                                                                                                                                                                                                              tggCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAACATATGGCCGCAACGGATAAGAAACGCGGt                        >  2:593315/1‑239 (MQ=255)                                                                                                                                                                                                                                 ccTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTCTTACGATGGCACTGCTCGTCCTGTTTATTGTCGTTCCGTTCCTCCAACCTCTTCTTCAACTTAACTCATTGATTCATTAAGGAAAGCATATGCGCGCAACGGAAAAAGAACACGGgtta                     >  2:313221/1‑238 (MQ=255)                                                                                                                                                                                                                                 ccTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTTTTTATTGCCGTGTCGGTCCTCCAACCTCTTCTTCAACTTAACt                                                                          >  2:526496/1‑186 (MQ=255)                                                                                                                                                                                                                                 ccTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGat                                                                   <  2:313346/193‑1 (MQ=255)                                                                                                                                                                                                                                 ccTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGat                                                                   >  1:313346/1‑193 (MQ=255)                                                                                                                                                                                                                                 ccTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGTTAAGCAACGCGGttt                      >  1:905369/1‑238 (MQ=255)                                                                                                                                                                                                                                 ccTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACCCGGtttt                     >  2:909154/1‑239 (MQ=255)                                                                                                                                                                                                                                 ccTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACCCGGattt                     >  1:208380/1‑239 (MQ=255)                                                                                                                                                                                                                                    ct‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTcttctt                                                                                    <  2:282188/173‑1 (MQ=255)                                                                                                                                                                                                                                    ct‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTcttctt                                                                                    >  1:282188/1‑173 (MQ=255)                                                                                                                                                                                                                                          gAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACCCTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACt             <  1:543311/239‑1 (MQ=255)                                                                                                                                                                                                                                          caaaaaaGCGGCCCGCTCGGCCCATTAATGGTCAGGGCAGCAGATAACCAGGAGACCCTCCAACAAAATCGGGTTGCCTTAACGCTCTCCATCTTCGAGCCAGCCATCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACt             <  2:860171/238‑1 (MQ=255)                                                                                                                                                                                                                                           aaaaaaGGGGGCAGCTCGGCACATTAATGGTCAGCGCCGCAGATAACCAGGAGACACTCCAACAAAAGCGGATCGCCTTCACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACt             <  2:744271/238‑1 (MQ=255)                                                                                                                                                                                                                                           aaaaaaGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACCCTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACt             <  1:96407/238‑1 (MQ=255)                                                                                                                                                                                                                                           aaaaaaGCGGGAAGCTCGGCAAATTAATGGTCAGAGCCGCAGATAACCAGGAGCCACTCCAACAAATTCTGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACt             <  2:172104/238‑1 (MQ=255)                                                                                                                                                                                                                                             aaaggggggCAGCTCGGAAAATTAATGGTCACGGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTTGACCCAGCACTCATTATTACGTTGGCACTGATCGTCCTGTTTATTGTCGTGTGGGTTCTGCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACTGGa          <  1:382256/233‑1 (MQ=255)                                                                                                                                                                                                                                             aaaaGGGGGCAGTTCGTGACATTAATGGTCAGGGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACTGGa          <  1:375970/239‑1 (MQ=255)                                                                                                                                                                                                                                             aaaaGGGGGCAGCTCGGCCAATTAATGTTCAGAGCCGCAGATAACCAGGAGACCCTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACTGGa          <  2:116777/239‑1 (MQ=255)                                                                                                                                                                                                                                                      cAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCCGGAGGCCCTCCAACTAAACCGGAACGCCTTAACCGTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGGCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACTGGAAATTAtgg  <  1:22701/238‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          TTAACAGCGCACGCTATCTCCGCACTTTAAGTATTTT‑GCAATCCAGCGGCGTCCCTCT‑GCTGGATGGGATGAAT‑TTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAACGTTCGCCAGGG‑TAACAGCATT‑CATC‑TTT‑CGCTGGAACAAACCGC‑AATTT‑T‑CCCGCCGATGATGCT‑CTACATGGTGGCCTCT‑GGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAAGGAAAGCATATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACTGGAAATTATGG  >  NC_000913/3460599‑3461069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑