| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,665,654 | T→A | 15.6% | V52V (GTA→GTT) | gadX ← | acid resistance regulon transcriptional activator, autoactivator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,665,654 | 0 | T | A | 15.6% | 206.9 / 3.2 | 76 | V52V (GTA→GTT) | gadX | acid resistance regulon transcriptional activator, autoactivator |
| Reads supporting (aligned to +/- strand): ref base T (36/26); new base A (3/10); total (39/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.18e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGTGCTCATCCTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTA > NC_000913/3665419‑3665869 | aGTTCTTATCCTCAAGGAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACa < 1:284709/239‑1 (MQ=255) cTCATCCTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAAAAAAAAAt > 2:741969/1‑239 (MQ=255) cTCATCCTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GAATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGAAACGAAAAAAAAAt > 2:611928/1‑239 (MQ=255) tCATCCTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAAtt > 1:802651/1‑239 (MQ=255) aTCCTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACCCGAATAAAAAAtttt > 2:454699/1‑239 (MQ=255) aTCCTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAAtttt > 1:680678/1‑239 (MQ=255) ccTTAAAAAAAACAGATAACCACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Ca < 2:220788/239‑1 (MQ=255) ctaaaGAAAAACGGATTACAACGCAAAGATTAATGCTTTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa < 2:202328/236‑1 (MQ=255) cTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa < 2:353468/239‑1 (MQ=255) cTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa < 1:950830/239‑1 (MQ=255) cTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa < 2:994064/239‑1 (MQ=255) cTCAAGAAAAACAGAAAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa < 2:941068/239‑1 (MQ=255) cAAAAAAAACAGATAACAACGCAAAGATTAATGCTCGTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAaca < 1:41471/239‑1 (MQ=255) aaaaaaaaaaAGAGAACAACGAAAAGATTAATGCTTTTTTACGTAGCATGTCTGCATAGCGAAGATTCTTATTCGGCGATAGTTGCGCAAATTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAaca < 1:393799/235‑1 (MQ=255) aCAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATc < 1:366399/239‑1 (MQ=255) gATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGCATACAAAATTTT‑CAACACACTTATCTa > 1:862976/1‑238 (MQ=255) aacGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGGGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAAt > 2:619435/1‑239 (MQ=255) acGAAAAGATTTATTCTTTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAAtt < 2:17730/239‑1 (MQ=255) cgaaaaGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa < 2:541675/215‑1 (MQ=255) cGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa > 1:541675/1‑218 (MQ=255) cGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAAttt > 1:834443/1‑239 (MQ=255) aaaGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTg > 1:412217/1‑237 (MQ=255) aaTGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCAt > 1:874008/1‑238 (MQ=255) gCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGc < 1:892092/239‑1 (MQ=255) cttttttTCGTTACATTTTTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCa < 2:874008/236‑1 (MQ=255) ttttACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACCCGAATTTGGC‑TTGCATCC‑Caaaaa > 2:745493/1‑239 (MQ=255) ttCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCa < 1:933306/223‑1 (MQ=255) tAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTaaa > 2:857306/1‑239 (MQ=255) cGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATa > 1:52086/1‑239 (MQ=255) cGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCCCAAAAACCAGGA‑CACCGCCCTTaaaaaa > 2:427008/1‑237 (MQ=255) cGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAATTTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGCCCCGAAAACAAACTTTC‑CAAAACAATTACCTACCCAAATTTGCC‑TTCCATCGCCAAAACCCAGGT‑ccggtctcttaaaaac > 2:933306/1‑224 (MQ=255) aGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGCCACGAATACAAAATTTT‑CAACACACTTATATACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAAAAGCg > 2:988145/1‑239 (MQ=255) tATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATATCGCTATTc > 1:414666/1‑238 (MQ=255) tCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAAAAGCGATATTCACCa > 2:155512/1‑239 (MQ=255) tGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTAt < 2:613264/172‑1 (MQ=255) tGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTAt > 1:613264/1‑172 (MQ=255) ttGCGCACTTTCATAAAAACCAGTAATTTATCTACAAAAGTGAGAAACAATAAAGGAAGAAATTTTTTTA‑TGT‑GCATGAAGATTTAAGGCCTCCTCCTGA‑ACCACCGGGAAAAAAAATAAAAG‑CGTGT‑CCTTTGACACAAAAACAAAATTTT‑CAACACTCTTATTGACTGAATTTTGGC‑TGGCACCCGAAAAACCAAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATgg < 1:92010/239‑1 (MQ=255) gctcAATTTCCTAAAAAAGAGAAATCCCCATACTACAGTGTAGAACGATTAAAGAAGAATCTTTTTTA‑GGT‑GCAAGAATTTTCAATGCCCCCTCCTGG‑ACCATCGGAAAAAATAATGAAGG‑CTTTG‑CCCTTGACACAAATACAAATTTTT‑CAACACTCTTATCTACTCGATTTTGGC‑TTCCTACCAAAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg < 1:611928/236‑1 (MQ=255) catctccaaaaaaacgaaaaTTTCTCTACAAGAGTGAAGAACGAGAAATGAAGAATTTTTTTTA‑GGT‑GAATAAAGATTTAATGCCCCCTCCGTG‑AACATGGGGAAAAATAATGAAAG‑GGTGT‑CCTTTGACAAAAAAAAAAATTTTT‑CAACACACTTTTCTCCTCGATTTTGGC‑TTGCATCCGAAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa < 1:267698/221‑1 (MQ=255) aatttCTTGAAAAATAGGTATATTTTTTCTACAGTGATGAAGGATTAATAAAGAATCTTTTTTA‑TGT‑GCATAAAGATTTAATGCCTCCTCATGG‑ACAAGCGGAAAAAATAAGGAAGG‑CTTGT‑CCCTTGAAACAAATAAAAAATTTC‑AAACACACTTTCCTACTCAATTGTGTT‑TTGAACCCGAAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa < 2:412217/236‑1 (MQ=255) tttcataaaaaaCAGGAATATTTCAACTAAGGTGAGAAACGAGTAATGAA‑AAACTTTTTTATTGT‑CAAGTAAGTTTTAATCCCTCCACTTAG‑AGCATGGGAAAAAAAAATGAAGG‑CGTTT‑CCCTTGACAAAAAAAAAAATTTTT‑AAACCCTTTTATCTATTCAATTTTGGC‑TTGCCTCCAAAAAACCCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAata < 1:754531/232‑1 (MQ=255) ggAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGGGAGAATATATTTATGTCTTGc > 1:570064/1‑239 (MQ=255) tttttcctctcaaggtaagaaaCGAGTAA‑AAAAAAACTTTGTTG‑TGTGGAATAAAATTTTATTCCCCCCTCCTGG‑AGCGCGGGAAAAAAAAATAAAGG‑CGGGC‑CCTTAGCCACAAAAACAAATTTTC‑AAACCCAC‑TCTCTAACAAAATTTGGCTTTGCACCCGAAAAACCCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 2:691667/219‑1 (MQ=255) atctctaTACTAGAGTGAGAAACGAGAAATAAAAAAACTTTTTTA‑GGT‑GAATGAATTTTAAATGCCTCCCCCGGA‑AGCATGGGGAAAAATAATGAAAG‑CGTTC‑CCTTTAACAAAAAAAAAAATTTTC‑CAACACACTTATCTACTAGATTTTGGC‑TTGCATCCACAAAAACGAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa < 1:745493/236‑1 (MQ=255) ctactaCAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAATACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAAt > 1:139364/1‑239 (MQ=255) tgatgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa < 2:129821/115‑1 (MQ=255) tgatgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa > 1:129821/1‑115 (MQ=255) tgatgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCAc > 2:70631/1‑187 (MQ=255) tgatgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTAt > 2:58603/1‑214 (MQ=255) atgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATAtt > 1:927945/1‑182 (MQ=255) atgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCCTTAACCATGGTGAGAatatat > 1:519470/1‑208 (MQ=255) atgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat > 1:586212/1‑208 (MQ=255) atgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTc > 1:277882/1‑238 (MQ=255) atgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCAAACGCAATTAAAAAATTc > 2:764034/1‑238 (MQ=255) atgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCAATTAAAATAGCGATATTCACCa > 1:242928/1‑187 (MQ=255) atgaACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCACAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTc > 1:839073/1‑238 (MQ=255) aagaaACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa > 1:785756/1‑99 (MQ=255) aagaaACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑Caa < 2:785756/99‑1 (MQ=255) aaaCTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATgaa > 1:664166/1‑226 (MQ=255) ttttttttA‑TGT‑GCATAAATATTTAATCCCTCCTCGTGG‑AGCGTC‑GGAAAAAAAAAGAAAGTCGTGC‑CCTTTGAACCAAAAAAAAAATTTT‑AAACACACTTATCTACTCAATTTTGGT‑TGGCACCCGAAAAACCCAGGC‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt < 1:973589/237‑1 (MQ=255) ttttttttA‑GGT‑GCAAGAATTTTTAAGCCCTCCTCCTTG‑AGCACGGGAAAAAAAAATAAAAG‑CTTGC‑CCCTTGACACAAATAAAAAATTTA‑CAACACACTTATCTACTAAATTTTGGC‑TTGCACCCAAAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt < 1:145811/237‑1 (MQ=255) ttttgtttA‑TGT‑GCTTGAAGTTTTAATGCCCCGTCCTTG‑AGCAGCGGTAAAAATAATAAAAG‑CGTCG‑CCCTGAACACGAAATCAAATTTTA‑CAACATACTTCTCTACACGAATTTGGC‑TACAATCCAAAAAACAGAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt < 1:59752/234‑1 (MQ=255) aCTTTTTTA‑TGA‑GAAGAAAGATTTAAGCCCTCCTCTATG‑AGCATGGGGAAAAAAAATGAATG‑CGTGT‑CCCTGGACACGAACAAAAAATTAC‑CAACACACTAACCTACTAGAATTTGCT‑TGGCTCCCACAAAACCCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt < 1:521972/239‑1 (MQ=255) agaagatatgttttAATCCCTCCTCATTG‑AGCATCGGAAAAAATAAGAAATG‑CGTTT‑CCCTTGACACAAATAAAAAATTTC‑CAACACACTTACCTCCTCGATTTTGGC‑TTGCACCCGAAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAata < 2:307948/228‑1 (MQ=255) gaaTGAAGTTTAAAGCCCCCCTCCTTG‑ATCACGGGGAAAATAAATGAAAG‑CGTGC‑CCTTTGCACCAAAAAAAAAATTTC‑CAACACCTTTATCTACCAGAATTTGGC‑TTGAATCAGAAAAACCCGGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat < 1:857306/236‑1 (MQ=255) gaaaattaaaccccccctccgTA‑ACCATGGGGAGAAATAATGAAAG‑CGGCC‑CTCTTGACAAGAATATAAATTCTC‑CAACCCCATTAGCTTCGCGAATTTCGC‑TTGCCCCCACAAAACCCAGTT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt < 1:230515/224‑1 (MQ=255) aaatattaatcccccccccctTG‑AGCAGCGGAAAAAAAAAAGAAGG‑C‑TGTCCCCTTGACAAGAAAAAAAAATTCA‑CAACACTTTTATCCACTCAATTTTGGC‑TTGCACCCG‑AAAAACCCGGTCCTCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt < 1:454699/221‑1 (MQ=255) aaagttttaacccccccactgtG‑AGCAAGGGGAAAAATAAAAAAAC‑CGTGC‑CCCTTGACACAAATAAAAATTTTC‑CAACACTCTTATCTACTCGATTTTGGC‑TTCCACCCGAAAAACCCAGTT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt < 1:741969/218‑1 (MQ=255) aaaGATTTAATGCCTCC‑CCTTGAAGCAGCGGGAAAAATAATGAACG‑CGTGT‑CCCTTGACAAAAATACAAATTTTA‑CAACCCATTTACTCACTCAATTTGGGC‑TCGCACCCACAAAACCAGGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt < 1:764034/238‑1 (MQ=255) cccccctcatttaagaTCGGGAAAAAATATGAAAA‑GGTTG‑TCCTTGACAAAAAAAAAAAATTTTCCACCACTTTTTTCAATTAGATTTTGTC‑TTCCACCAAAAAAAACAAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTa < 2:802651/224‑1 (MQ=255) tcctcctTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAAc > 1:487406/1‑143 (MQ=255) tcctcctTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACCTAAAc > 1:307948/1‑229 (MQ=255) tcctcctTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAAAATTAAATAAACAAATTaattt > 2:358600/1‑235 (MQ=255) cctcctTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat > 1:556043/1‑158 (MQ=255) cctgaagaagcggaaaaaaaaaTAAAAG‑CGTCT‑CCTTGCACAAAAATAAAAATTTTA‑CAACACTCTTATCTGCTAAATTTTGGC‑TGGCA‑CACAAAAAACCAGGTCCGCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTttat < 1:437865/223‑1 (MQ=255) gAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTa > 1:234069/1‑239 (MQ=255) | AGTGCTCATCCTCAAGAAAAACAGATAACAACGCAAAGATTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTA‑TGT‑GCATGAAGATTTAATGCCTCCTCCTTG‑AGCATCGGGAGAAATAATGAAAG‑CGTGT‑CCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGC‑TTGCATCCGCAAAAACCAGGT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTA > NC_000913/3665419‑3665869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |