| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,285,875 | C→G | 16.4% | P134A (CCG→GCG) | agaD → | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,285,875 | 0 | C | G | 16.4% | 144.5 / 5.1 | 64 | P134A (CCG→GCG) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| Reads supporting (aligned to +/- strand): ref base C (14/38); new base G (9/2); total (23/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.11e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGGCGATGAAAGATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCATCGACAATACCCACAGCGTTGCG > NC_000913/3285638‑3286105 | gcggcgATGAAAGATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGc < 1:317352/238‑1 (MQ=255) tAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTAttttt < 1:416279/237‑1 (MQ=255) tAACCCCGAATTTATTAAAACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTAGTAAGTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTAttttt < 1:984156/237‑1 (MQ=255) aCCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGGATTTGGTCATTATTTTTCAGCCCGGGGAAACTTC‑TGGGGGCGGTTTTTTTTTTTGcc > 1:172346/1‑239 (MQ=255) cGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGttt < 1:157058/239‑1 (MQ=255) gacagattacagccccgccGAATGTGGTCGGATTCCTGATGGGGTGATTAACTTCGAAGGAAGAAAAAGGAGAAAACCGCGACCCCATTAAAGGCCTCAAAGTAGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTAATTTGTTGCCGATTATGGC‑GAGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGTGCCGATTCTATTTTTCGCCGTTTAc < 2:238489/222‑1 (MQ=255) aaTTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAAATTTCTCATCGTTTTGCATCCAAGGGAACACGC‑TGGGGGCGGTTCTtttttttttcccttt > 1:199853/1‑229 (MQ=255) acccGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGGATTTGTTTTTCTTTTTCCCTCCCCGGGAAACTGC‑TTGGGGCGGGTTTTTTTTTTTCTGTTTTCCTTCTTTTCtttttt > 2:572863/1‑238 (MQ=255) acccGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAGTTTGTTCATCCTTTGCCACCCAGGGAAACATGC‑TGGGGCCGCTTATCTTTTTTTCCGGTTATCTGCTTATCtttttt > 2:1104478/1‑238 (MQ=255) acccGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATATGCTCCTCCTTTTCCTACCACCGGAACATGC‑TGGGGGCGCTTCTATTTTTTCCCGTTTTGCCTCTTCTCtttttt > 2:335367/1‑238 (MQ=255) cccGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGGATTTGCTTATCTTTTTTCCCCCAGGGAAACCTTC‑TGGGGGCGTTTCTATTTTTTGCCGCTTTTCCGCtttttttttt > 1:453465/1‑237 (MQ=255) cccGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGCGACTTTTTCAACTCTTTCCATTCCGGGGAAACTGC‑TAGGGGCGGTTCTTTTTTTTGTCCTTTATCCGCCTGTCttttttt > 1:238489/1‑237 (MQ=255) aaTCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGGATTTGCTCATCATTTTCTAGCCCTGGGAGCCTGC‑TTGGGGCCCGTGTATTTTTTTCCCTTTTCCTTCTTATCTTTTTTCtccc > 2:597869/1‑236 (MQ=255) aTCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTgcgc < 1:901008/239‑1 (MQ=255) cTGGGCGGATTCCGGATGGGGTTATTAATTGCGATGGAAGAAAAAGGAGAAATCCGCGACACCATTAAAGGCCGAAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGt < 2:450217/239‑1 (MQ=255) tGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCAc < 1:572863/239‑1 (MQ=255) attaATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGTGATTTTCTCATCACTTGCCCGCCCGGGGAACCTGCTTGGGGCCG‑TTCTATTTTTTCCCGTTTAACTCTCTATCTTTTTTCTGCGCGGGGGTGGGAACCACGTCCGTtttt > 1:1084748/1‑239 (MQ=255) ttCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTTCTCATCCTTTTCCAGCCACGGAAACCTGC‑TGGGGCCGGTTCTTTTTTTTGTCGCTTTCCTGCTTATTTTTTTTTTGCGCGCTGGCTGGACCCACGTCGGGTTTTCAGTCg > 1:865003/1‑239 (MQ=255) tCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGGGGAATTTG‑TCATCATTTGTCAACCCGGGGAAACTGC‑TGGGGGGGGTTATTTTTTTTGTCGTTTTCCTGCTTTTCTTTTTTCTGCTGCTCCGCCGGACTCACgcacgtgttttagttcc > 2:445312/1‑223 (MQ=255) cGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAAATTGCTCATTATTTTCCCCCCCGGGAAACCTGC‑TTGGGGCGGTTTTATTTTTTGCCGTTTTCCCTCTTATTTTTTTTCTGCGCGTCGGCTGGGCCCCCGCCCGTttttttctcgt > 1:289789/1‑231 (MQ=255) tGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGGAATTGTTCATCCTTTGCCCGCCATGGGAACCCGC‑TGGGGCCGAGTCTATTTTTTGCCGCTTTCCTGCCTTTTTTTTTTCTTCTCGTCGGCTGGGACCACGCCGGTTTTTCTCTTGGCGTg > 1:767665/1‑239 (MQ=255) gaagaaAAAGGCGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGa < 2:126848/238‑1 (MQ=255) aaaaGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGACACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTGCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTCCCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGc < 1:1054598/237‑1 (MQ=255) gaAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATa < 1:668328/238‑1 (MQ=255) tAAAGGCCTCAAAGTGGCTCTGTTTCGCTCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTTCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGTGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGc < 2:664892/239‑1 (MQ=255) aaaGGCCTCAAAGTGGCGCTGTTTGGCCCAATCGCCTGGATTGGCGATGCGATTTTCTGGTTTGCGTTGGTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCa < 2:721168/239‑1 (MQ=255) aaaGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTc < 1:609755/236‑1 (MQ=255) cTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTTCTCATCATTTTTCCGCCCGGGGAACCTGC‑TTGGGCCGATTCTATTTTTTTCCGTTTTTCTGCTTTTCTTTTTTCTTCGCGTCGGCTGGACCCCCCTCGGTTATTCTGTCGGCGTGAAGGCGATCGATAAAATGCGGGAGAACTCGCAgatgat > 1:1023607/1‑239 (MQ=255) aaaGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGc < 1:756322/239‑1 (MQ=255) aGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCAc < 1:119103/175‑1 (MQ=255) gTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCaa < 1:259864/239‑1 (MQ=255) ttGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAAcc < 1:1104478/239‑1 (MQ=255) tgcgatTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGGCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATcggc < 1:446358/238‑1 (MQ=255) tttCTGGTTTACTGTGTTGCCGATTATGGC‑GGGAATTTGCTCACCATTTGCCGGCCAGTGAAACCTGC‑TGGGGCAGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTGCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTg < 2:453465/238‑1 (MQ=255) ttCTGCTTTACTTGGTTGCCGATTATGGC‑GGGAATGTGCTTATCATTTCCCAGGCAGGGAACCCTGC‑TGGTGTAGATTCGATTTTTCGCCGTTTACCTGCTTATCTCTTTCCTTCGCGTCGGCTGGACCCACGCCGGTTATTCAGTCGGCGTGAAGGCGATCGATTAAGTGCGAGAGAACTCGCAGATGATTGCGCGTTCGGCAACCATCCGCGAGAACACAGTAATCCGCGGGCTCAt < 2:879544/239‑1 (MQ=255) gtgttttACTTTGTTGCCGATTATGGC‑GAGAATTTGCTCATCATTTGCCAGCCAGTGAATCCTGC‑TGGGGGCGATTCTATTTTTCGCCGTTTACCTGCGTATCTTTTTCCTGCGCTTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCg < 2:430205/235‑1 (MQ=255) ggTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCt < 1:973120/239‑1 (MQ=255) tttACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCtt < 1:141301/238‑1 (MQ=255) tACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGt < 1:597869/239‑1 (MQ=255) gacttgtgtgCCGTTTATGGC‑GGAAATGTGCTCATCTTTGGCCAGCCAGGGGAACCTGC‑TTGGGCCGATTCTATTTTTCGCCGTTTTCCTGCTTATCTTTGTCCGGCCCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAAGCGGCGGGCTGAGCGCTGCGt < 2:1083752/231‑1 (MQ=255) cTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGt < 1:1024574/237‑1 (MQ=255) tttGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTAtg < 1:471160/239‑1 (MQ=255) ttgttgCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTAtgt < 1:1015497/239‑1 (MQ=255) tgttgCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTAtgtg < 1:1146835/239‑1 (MQ=255) tgCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCat < 1:1023347/239‑1 (MQ=255) gCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTGCCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCata < 1:992362/239‑1 (MQ=255) cGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATAtt < 1:819912/239‑1 (MQ=255) ttATGGC‑GGGAATTTGGTCATCATTTGCCAGCCAGGGAACCCTGC‑TGGGGGCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTaa < 2:767665/238‑1 (MQ=255) gggAATTTGCTCATCATTTTCCAGCCAGGGAATCCTGC‑TGGTGCCGATTCTATTTTTCGCAGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCGGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGa < 2:880709/239‑1 (MQ=255) ttGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGt < 1:335367/239‑1 (MQ=255) catcctTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGTCGTGAAGGCGATCGATACAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGTTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTTACTGGGTGACATCTTGTGc > 2:720967/1‑238 (MQ=255) tcatTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCAt < 1:949865/239‑1 (MQ=255) tcatTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCAt < 1:445312/239‑1 (MQ=255) gccagccaGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGAt < 1:566656/191‑1 (MQ=255) gccagccaGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGAt > 2:566656/1‑191 (MQ=255) gccagccaGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCCTATTAACGCGGTGACATCGTTTTCCATcaacaa > 1:701277/1‑239 (MQ=255) cagccagGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCATCGACAAt < 1:319092/238‑1 (MQ=255) agccagGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCATCGACAATa > 1:374297/1‑238 (MQ=255) agccagGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCATCGACAATa > 1:333276/1‑238 (MQ=255) ccagGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCATCGAc > 2:1147726/1‑232 (MQ=255) ccagGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCATCGAc < 1:1147726/232‑1 (MQ=255) ccagGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCATCGACAATAccc > 1:694073/1‑239 (MQ=255) ccTGC‑TGGGGCCGCTTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTTGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCAGGGTAATCGGCGGGATGATCGCTTCGCTTGTGCATATTATCGTGTGGACATCGGTTGTCCTCGACAATAccccacgccttg > 2:902434/1‑230 (MQ=255) tgc‑tgGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCATCGACAATACCCACAGCGTTgcg < 1:613108/239‑1 (MQ=255) gc‑tgGGGCCGATTGTATTTATCGCCGTTTGCCTGCTTATCTTTTTCCTGCGCGTCCGCTGGACCCACGTCGGTTATTCAGTCGGCGTCAAGGCGATCGATAAAGTGCGAGCGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTAGGGATCTCGGCAATCGGCGGGCTGACTCCTTCGTATGAGAATCTTATCGAGCTGACATCGTGTGCCATCGACAATACCCACAGCGTTgc > 2:366787/1‑237 (MQ=255) | GCGGCGATGAAAGATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC‑GGGAATTTGCTCATCATTTGCCAGCCAGGGAAACCTGC‑TGGGGCCGATTCTATTTTTCGCCGTTTACCTGCTTATCTTTTTCCTGCGCGTCGGCTGGACCCACGTCGGTTATTCAGTCGGCGTGAAGGCGATCGATAAAGTGCGAGAGAACTCGCAGATGATTGCCCGTTCGGCAACCATCCTCGGGATCACGGTAATCGGCGGGCTGATCGCTTCGTATGTGCATATTAACGTGGTGACATCGTTTGCCATCGACAATACCCACAGCGTTGCG > NC_000913/3285638‑3286105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |