| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,151,328 | T→G | 23.0% | A590A (GCA→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,151,328 | 0 | T | G | 23.0% | 110.9 / 2.8 | 75 | A590A (GCA→GCC) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base T (38/14); new base G (12/8); total (51/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTT > NC_000913/4151093‑4151564 | ggTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCACTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑CTGAGGAGGtct > 1:126694/1‑236 (MQ=255) gACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTTG‑GACCACAGCGCCCC‑CTGCGCAGGGGggccg > 2:1303247/1‑238 (MQ=255) aCATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGCGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCTCCTTTCAGGCTTCCTGGCGGTTTT‑GAAAGGACCGCCGC‑ATGAGCAGGGGggccgc > 1:1340019/1‑238 (MQ=255) cATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGcgccgccg < 1:946423/239‑1 (MQ=255) cATCGCAGGAGATGACTGACAGTTCATCAATAATGCGAGGCCAGCTCTCTGTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTGAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCGTTCAGGCTGCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGcgccgcc < 2:58767/238‑1 (MQ=255) tCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATCTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCcgcg < 1:371563/239‑1 (MQ=255) cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGGGCGCCGCcgcg > 1:101826/1‑238 (MQ=255) cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAG‑‑CTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ACGAGCCGGGGCGCCGCcgcgga > 1:1054388/1‑236 (MQ=255) gagaTGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATAATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCACCCCCGC‑CTGAGCCGTGGCGCCGCCGGGACCAAt > 1:202000/1‑239 (MQ=255) acAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTTG‑TACAGCAACGCCGC‑CTGAGCAGGTGCGCCGCAGCCGACAAAGGAAccgcc > 2:1228706/1‑238 (MQ=255) aGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGGTTT‑TGCAGCAGCGCCGC‑CTGGGCAGGTGcgccgccccttccctttacacatctga > 2:134157/1‑218 (MQ=255) ttCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAAGCCGCCTTTCAGGCTTCCTGGCGGCTGC‑TACAACACCGCCGC‑ACGAGAAGATGCGTCCCCCCCACCACTAGAACcgccgccg > 2:786143/1‑236 (MQ=255) cATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTTT‑GACAGCAGCGCCGC‑ATGAGCCAGGGCGCCGCCGCGACCAATGGAACCGCCGCGcccc > 1:1237757/1‑238 (MQ=255) tAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGACTTTCAGGCTTCCTGGCGGGTGT‑GACAGCCGGGGCGG‑ATGAGCCGGTGGGCCGCCGCCGACAAAGGAACCGCCGCGAGCGGGGaaa > 2:113904/1‑238 (MQ=255) tGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGGGGaacaac > 1:1171719/1‑239 (MQ=255) aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCACCGCCGC‑ATGCGCAGGTGCGCCGCCGCGACCACTGGACACGCCGCGGCCGCGGCAACACGTCa > 2:29693/1‑239 (MQ=255) aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGCTGT‑GACAGCACCGCCCC‑CAGAGCAGGTTGCCCGCCCCGACCAAAGGAAacgcccggcccctgggcaaacacc > 2:624391/1‑219 (MQ=255) cGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GGCAGCAACGCCGG‑CTGAGCAGGGGCGCCGCCCCGACCAAAGGGACcgccgccgcccgggcaccacggca > 2:66793/1‑220 (MQ=255) tttCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGG‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAAACGCCCCCACCCGGGAACAACGTCCGCCCAAAAccc > 2:1378109/1‑238 (MQ=255) gggcggtgggTTGGCGTCCAGAGTCCCCCCGTTATAAAGGGGCGGTCTGCGGACGTGTTTTTCTG‑GCAGACCATTTTTAATGGGGATCACCTCGCCCTGGTCGGTTACGCGCGGGCCGCCTTTCAGGTTTCCTGGGGGTTGT‑GACAGCGGCGCCGC‑ATGAGCAGGTGCCCCGCCGCGCCCATTGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGtt < 2:596800/230‑1 (MQ=255) tgTTGGCTCCCAGAGCCGCCCGGCTAAAAAGCGACGGGGTGGGGTGGGTGTTTTCTG‑GCAGCCCCTATTAAAAGCTGATCATCTCGCCCTGTGCGGTTGCGCGCAGCCCCCCTTCCAGGCTTCCTGGCGGTGGC‑GACCGCAGCGCCGC‑AGGAGCGGGGGCGCCGCCGCGACCAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAAt < 2:889630/238‑1 (MQ=255) ctccgaaaccccccccGGTATAAAGCAACAGGCTGCTGGCGGTGATTTCGG‑GAAGCCAATTTTAAAAGGGGATCTTCTCCCCTTGTTGGTTTACGCGGGGCCCGCTTTTCGGTCTTCCGGGGGTTTGT‑GACAGCGGCGCCGC‑ATGGGCGGGTGCCCCCCCGCGCCAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGa < 2:1411381/216‑1 (MQ=255) ccAGAAGCCCCCCGTTATAAAGCGATAGGCGGGTGAGGGTGTTTTCGG‑GCGGCCCTTATTTAAAGCGCTTCATCCCGCCTTGTTCGGTTCCGCGCAGGCCGCCTTTCAGGCTTCGGGGGGGTTGT‑GACAGCAGCGCCCC‑ATGGGCAGGGGCGCCGCCGCCACCAATGAAGCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCtgt < 2:1051564/239‑1 (MQ=255) cAGAATCGCCCCGGTATAAACCGACAGGCTGCTGACGGTGATTTCGG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTAACACGCAGGCCTCCTTTCAGGCTTCCTGGCGGTTGG‑GGCCGCAAACCCGC‑GTGCGCAGGTCCGACGCCGCCGACACTGGGAACGCCGCGAACGGGGCAAACCGGCAGCGCCAGACACGCTTTTTCTCAggggtcggttcgtggcctctgag > 2:973538/1‑218 (MQ=255) aGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCCGCGCCGC‑CTGGGCAGGGGCGCCGCCCCGACCAAAGGAACCGCCGCGGCCCTGGGACAACGCCAGCTCACTACCCCCCTTTTCCCAGGGTTTGTTTAATTCCTCCtgtg > 2:72028/1‑238 (MQ=255) cGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGGGCCGC‑CTGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGGCCGGGGAACAACGGCCGCCCAAAACCCACTTTTTCGCCGGTTTTGATTAATGCaatccttgccctta > 1:1411381/1‑226 (MQ=255) aaggcacgggcggcTGA‑GGTTATTTCGGTGCAGAACTTATTCAAAGCGCCCCATCCCGCCTTTGCCGATTCCGCGCGCGCCGCCTTTCGGGTTGCCGGGCGGTAGT‑GCGAGCAGCCCCGT‑ATGGGCGGGTGCCCGCCCGCACCCAATGAACCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAgg < 2:938457/231‑1 (MQ=255) aCAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTCATATTGCGCCCCggca > 1:1394129/1‑234 (MQ=255) cgggCTGCGGGCGTTGTTTTCGG‑GCAGCCTTTTTTTAAGGGGTACCCTCGCCCCCTTTTGGTTTCCGCCCAGCCCGCCTTCCGGGCTTCCTGGGGTTTGT‑GACAGCGGCGCCGC‑ATGAGCGGGTCCGCCCCCGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt < 2:1126347/236‑1 (MQ=255) cAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTTT‑GACAGCAGCGCCGC‑ATGAGCAGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt > 1:1334210/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt > 1:194610/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAAACGCCGCGCACGTGGAACAACGGCAGCTCAATACCCGCTTTTTCCCAAGTTTTGATTAATACATCCTGTGCCCTGTATTTCGCCCAGGAAGCt > 2:1207071/1‑238 (MQ=255) tgctgACGGTGGTTTCTG‑GCAGACCATATTTAAAGCGTATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCCACCAATGGAACCGCCGCGCCCCTGGAACAACGTCAGCCCCATACCCCCCTTTTCGCAGGTTTTCATTAATGCATCCTGGGCCTGGTATTTCTGCCAGGAAGCGTCCAt > 2:1160170/1‑238 (MQ=255) ctgACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATc > 1:1199554/1‑237 (MQ=255) ttttttCTG‑GCCGACAATTTTCAAAGCGGCTCCCCCCGCCCTGTTGGTTTGCGCGCGCGCCCCTTTTCGGTCTTCGTGGGGGTTGT‑GCCACCGCCCCCAC‑TGGAGGAGGGCCCCCCCCCCGACAAAGGTAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGc < 2:1334210/235‑1 (MQ=255) tgttttCTG‑GCATACCATATTAAAAGCGTCCCCCCCCGCCCTGTTCGTTTCCGCGCGGGCCCCCTTTCAGCCTGCCTGGCGGTTGT‑GACAGCAGCGCCGC‑AGGAGCGGGGGCGCCGCCGCGACCAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGc < 2:194610/235‑1 (MQ=255) tttCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCCCCGCGACCGTGGGACAACGTCACCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCACGAAGCTGCCATCACTCCCGCATCt > 2:1287046/1‑239 (MQ=255) g‑gCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCtttt > 1:198583/1‑237 (MQ=255) caccacttctttaaaaGCGGATACTCCCGCCCGGTTGGTTGCCGCGACGGCGCCCTTGCGGGCTTCCGGGCGTGTGT‑GACAGCGGC‑CCGCAAAGGGCGGTTGCGCCGCCCCAACCAGCGATACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGc < 2:1112694/225‑1 (MQ=255) cAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATg > 1:1030215/1‑182 (MQ=255) gACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGTCGGTTGT‑GACAGCAGCGCCGC‑CTGAGCAGGGGCGCCGCCGCGACCAATGGAACCGCCGCGCCCGTGGAACAACGTCCGCTCAATACCCGCTTTTTCGCATGTTTTGCTTAATCCCTCCTGCTCCTGATATTTCGTCCAGGGCACTTCCATCACTCCCGCATCTTTTTCTCAg > 2:327242/1‑239 (MQ=255) gATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGGGCCGCCGCGACCAATGGAACCGCCGCGGCCGTGGGACAACGTCAGCCCAATACCCGCTTTTTCGCAGGGATTGATTAATGCATCCTGTGCCTGATATTGCGACCAGGAAGCTGCAATCACTCCCCCATCTTTTGTCGGGTACGAATCGGCAatca > 2:325215/1‑239 (MQ=255) gATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGGACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTACCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 2:120491/1‑239 (MQ=255) atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGGAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCCGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 1:380892/1‑238 (MQ=255) atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCCGGAAGCTGCCATCACCCCCGCCTCTTTTGCTGCTGCGGAATACCCAatca > 2:1039839/1‑238 (MQ=255) atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 1:786479/1‑238 (MQ=255) atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 1:784876/1‑238 (MQ=255) gCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCGGCCATCACTCCCGCCTCTTTTGGTGAGTCGGGATAGCCAATCATCACCa > 2:398153/1‑236 (MQ=255) cTGTTCGGTTACGCGCACGCCGCCTTTCGGGCTTCCGGGGGGTGGT‑AAGAGCGGCGCCGA‑AGGGGGAGGTGCGCCGCCGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGtt < 1:261934/239‑1 (MQ=255) tgtgcggtacgccgcAGGCCGCTTTGCCGCCTCCCTGGCGTTTGT‑GCCGCCGGCCCGCC‑ATGGGCGGGGCCGCCCCCGCGACAAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGtt < 2:1301974/226‑1 (MQ=255) gTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGttt > 2:394447/1‑238 (MQ=255) ttCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTg > 2:253957/1‑238 (MQ=255) ttCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTg > 2:1293107/1‑238 (MQ=255) ttACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGATGAGTCGGAATAGCCCATCATCCCCATCTGTTTGCCCTgc > 1:1014027/1‑238 (MQ=255) cgcgCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGGGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTCCTGAGTCGGAAAAGCCAATCATCACCATCTGTTTGCCCTGCATc > 2:60029/1‑239 (MQ=255) cccgcggCCGCCTCCCAGGCGTCGGGGCGGTTGC‑CACAGCGCCGCCGA‑GTGAGCGGGCGCGCCGCCGCACCAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCa < 2:1054388/234‑1 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCCGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGGTTGCCCTGAATCAg > 2:705671/1‑239 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTTCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAAACAg > 2:1271521/1‑239 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGcc > 1:977951/1‑230 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGCGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCTCAATACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGACATCACTCCCGCCTCTTTTGCTGAGTCGGAATATGCCATAATCACCATATGTTTGCCCTGAAtacg > 2:749779/1‑236 (MQ=255) cgcAGGCCGCCTTTCAGGCTTCCTGGCGGTTGG‑GACAGCAGCGCCGC‑ATGAGCATGGGCGCCGCCGCGAACAATGGAACCGACGCGACCCTGGAACAACGTCAGCTCAATAACCGCTTTTTCGAAGGTTTTGATTAATGCAACCTGTGCCTGATATTGCGCCCAGGAAGATGCCATCACTCCCCCCTGTTTTGCTGCGTGAGGATAGCCAAACATCACCATCTGTTTGCCCTGAATCAg > 2:274557/1‑239 (MQ=255) gggCCCCTTTCCAGCCCTCCGGGCGTTTGG‑GACGGCAGCCCCGC‑GAGAGCGGGTGCCCCGCCGCGCCCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc < 1:749779/237‑1 (MQ=255) gccgccTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCAc > 1:1075699/1‑239 (MQ=255) ccTTTCAGGCTCCCGGGCGTTTGA‑GACCGGCGCCCCGC‑GTGAGCAGGTGCCCCGCCGAGACCAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 1:673273/239‑1 (MQ=255) ttccAGGCTCCCTGGCGGTTGT‑AACGGCGGCGCCCC‑ATGGGAGGGGCCGCCGCCGCGCCCAAGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATAcc < 1:60029/236‑1 (MQ=255) ccggCTTCTGGGGGTTTGT‑GACAGCACCCCCGA‑AGGGGCGGGCGCCCCGCCGCGCAAAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGt < 1:786143/237‑1 (MQ=255) aGGCTCCCTGG‑GGTTGTGGACAGCGCCCCCGC‑AGGGGCGGGTCCCCCGCCCAGCACATGGAAACCGCCGCGACCGTGGAACAGCGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGt < 1:113904/238‑1 (MQ=255) tCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCCGTCAatat > 1:368268/1‑239 (MQ=255) tCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCA‑CTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATAtt > 1:1171110/1‑239 (MQ=255) ttGT‑GACAGCCGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACCTCAGCTCAATACCCGCTTTTTTGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTTGGCCCAGGAAGCGGCCATCACTCCCGCATCTTTTGCTGAGTCGGACTAGCCAATCATCACCATCTGTTTGCCCTTAATCAGGCCACGATACCAGGCAATATTGcgca > 2:446570/1‑236 (MQ=255) ggaaCAGCGGCGCCAC‑ATGGGCGGGGGCCCCGCCGCGACCAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTgg < 1:1378109/236‑1 (MQ=255) accgccgc‑AGGGCCGGGGGCCCCGCGGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCAt < 1:1243984/234‑1 (MQ=255) gcgcCGC‑ATGAGGGGGTGCGCCGCCGCCACAAAGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGAc < 1:398153/238‑1 (MQ=255) ggggggTGCCCCGCCGTGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg < 1:1207071/234‑1 (MQ=255) gCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCgtt > 1:1025865/1‑239 (MQ=255) ggTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCgttgt > 2:1409572/1‑238 (MQ=255) tGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCAt > 2:758479/1‑120 (MQ=255) tGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCgttgtt < 1:1160170/237‑1 (MQ=255) tGCGCCGCCGCGACAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCAt < 1:758479/120‑1 (MQ=255) | GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTG‑GCAGACCATATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGGCTTCCTGGCGGTTGT‑GACAGCAGCGCCGC‑ATGAGCAGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTT > NC_000913/4151093‑4151564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |