| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,807,367 | A→C | 16.8% | T80P (ACC→CCC) | proX → | glycine betaine/proline ABC transporter periplasmic binding protein, cold shock protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,807,367 | 0 | A | C | 16.8% | 220.1 / 6.9 | 80 | T80P (ACC→CCC) | proX | glycine betaine/proline ABC transporter periplasmic binding protein, cold shock protein |
| Reads supporting (aligned to +/- strand): ref base A (54/11); new base C (2/13); total (56/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.96e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGACATAGCGTACTTTTTGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTA > NC_000913/2807132‑2807601 | gCGACATAGCGTACTTTTTGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCt > 1:628787/1‑239 (MQ=255) cGACATAGCGTACTTTTTGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCt > 2:122829/1‑238 (MQ=255) gcatgaccttatttttgGCGACACCTTTTGCAACCTTTATTTCTACACAACCTTTGGCTGCCGATCTCCCGGGCAAAGTCTTTACTGAAATTCCAGTTCAGAGCCCCATCACTAAAGAAACCTCCCAGACGCTGCTGGTCAGTGGTGCGCTGGAAAAATTAGG‑TATACCGTCAAAAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTC‑CCCCTCGCTTGCTTCCGGC‑G‑ATGCAACCTGCa < 2:509877/227‑1 (MQ=255) aGCGTACTTTTTGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCAccg > 2:607118/1‑238 (MQ=255) cGTACTTTTTGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CAA‑CACCTCGCTCGCTTCCGGC‑G‑ATGCAACCTTCAcc > 1:907067/1‑235 (MQ=255) tACTTTTTGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAACCCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAACCCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTg < 1:22746/239‑1 (MQ=255) tACTTTTTGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTg > 2:1075542/1‑239 (MQ=255) tttttGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCACCCTTCACCGCCGTGa > 1:338785/1‑237 (MQ=255) tttttGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGa > 2:882597/1‑237 (MQ=255) tttGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTg > 1:347391/1‑239 (MQ=255) tGCGACAGCTTTTGCCACGCTTATCTCTACACAAACTTTTGCGGCCGATCTGCCGGGAAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAACCCCAGCGAAGTAGA‑TTACAACTTTGG‑CTC‑CCCCTCGCTTGCTTCCGGC‑G‑ATGAACCCTTCACCGCCGTGAACTGGa < 1:1276681/239‑1 (MQ=255) tGCGACAGCTTTTGCCACGCTTATCTCAACAAAAACTTTTGCGCCCGATCTGCGGGGCAAAGGCATTCCTGTTAATCAATTTCAGAGCCCCATCACTAAAGAACCCTCCCAGACCCTGCTGGTCAGTCGTGCGCTGGAAAAATTGGGTTATACCGTCAACAACCCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CCCCTCGCTTGCTTCCGGC‑G‑ATGCACCCTTCACCGCCGTGAACTGGa < 2:1016732/239‑1 (MQ=255) gCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGAGCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGACCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGCGATATTAGGCTATACCGTCACCAAACCCAGAGAAGTAGA‑TTACAACGATGG‑CTA‑CACCTCGCCTTCTTCCGGC‑G‑ATGCCCCCTTCACCGCCGTGAACTGGa > 2:1194570/1‑238 (MQ=255) gACAGCTTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAACCCTTCCAGACGCGGCTGGTCAGGCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAACCCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTCCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGc < 1:1105976/239‑1 (MQ=255) cggCGTTTGCCACGCTTATCCCTACACAAATTTTTGCGGCCGATCTCCCGGGCAAAGGCATTACTGTTAACCCAGTCAAGAGCACCATCACAGAAGAACCCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGAAGAAATTAGGTTATACCGTCAACAACCCCAGCGAAGTAGA‑TTCCAACGTTGG‑CTA‑CCCCTCGCTTGCTTCCGGC‑G‑ATGCACCCTTCACCGCCGTGAACTGGACGCCa < 2:869047/237‑1 (MQ=255) cccgcttaccttcccacaACCTTTTGCTGCCGATCGGCCGGAAAAAGGATTTACTGTTAATCCAGTTCAGAGCACCATCAGTGAAGAACCCTCCCAGACGCGGCGGGTCAGTCGTGCGCGGGAGAATTTAGGTTATCCCGTCAACAACCCCAGCGAAGTAGA‑TTACACCGTTGG‑CTA‑CCCCTCGCTTGCTCCGGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca < 2:1012635/225‑1 (MQ=255) cACGCTTACCTCTACACAAACTTTTGCGGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATCCCGTAAACAACCCCAGCGAAGTAGT‑TTACAACGTTGG‑CTA‑CACCTCCCTTGCTTCCGGC‑G‑ATGAACCCTTCACCGCCGTGAACTGGACGCCACTGCATGac < 1:117228/238‑1 (MQ=255) aaaCTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGcc > 2:1279474/1‑239 (MQ=255) aaCTTTCGCCGCCGAGGTGCCGGGCAAAGCCATGATTCAGAATCCAGCTAAGAACACCACCCAGAAAGAACCCTGCCAGACGCTGCGGGTCACTCGCACGATGGAGAAATTAGTTTATCCCGTCAAAAAACCCGGCAAAGTAGA‑TTACAACGTGGG‑CAG‑CACCCCCCTTGCTCCCGGC‑G‑AGGCACCTTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCg < 2:861009/239‑1 (MQ=255) aCTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCgg > 1:378586/1‑239 (MQ=255) ccGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAg > 2:1163841/1‑239 (MQ=255) gggCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATc > 1:497174/1‑239 (MQ=255) gCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAggg > 2:613228/1‑239 (MQ=255) tACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTAt > 1:212850/1‑239 (MQ=255) tACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTAt > 1:503027/1‑239 (MQ=255) ttAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGtt > 1:695857/1‑239 (MQ=255) tCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGgcg > 2:245180/1‑236 (MQ=255) tCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAAAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGgcg < 1:245180/236‑1 (MQ=255) cagacaccaacccctaaaaaaaCCTCCCAGCCTCTGCTGGCCAGTCGTGCCGTGGAAAAATTAGTTTATCCCGTCAACAACCCCAGCGAAGTAGA‑TTACACCTTTGC‑CTC‑CCCCCCGCTTGCTCCCGGC‑G‑AGGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc < 2:998436/220‑1 (MQ=255) cAGACCACCATCACTGAAAAAACCTCCCAGACGCTGCGGGTCAGTCGTGCGCGGGAGAAATTAGGTTATCCCTTCAAAAACCCCAGCGAAGTAGA‑TTACACCGTTGG‑CTA‑CACCTCGCTTGCTCCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc < 1:527072/239‑1 (MQ=255) agaccaccaccccaaaaaaaaCCTCCCAGCTGCTGGTGGTCGGCGGTGCGCTGGAAAAATTAGGTTATACCGTCAACAACCCCGGCGAAGTAGA‑TTACACGGTTGG‑CAA‑CACCCCGCTTGTTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca < 2:567791/221‑1 (MQ=255) agCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGcaca > 2:1308810/1‑239 (MQ=255) agCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGcaca > 2:1142047/1‑239 (MQ=255) cATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGtt > 2:683140/1‑239 (MQ=255) tCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTa > 1:1046519/1‑238 (MQ=255) aCCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTACCGGCGCGGCACAGGGTTACCTGATCGATaa > 1:104226/1‑239 (MQ=255) aCCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATaa > 1:438598/1‑239 (MQ=255) ttCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGaa > 1:1000371/1‑239 (MQ=255) ccAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGaaa > 1:793431/1‑238 (MQ=255) gctgctGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAAccgccg > 2:315120/1‑239 (MQ=255) tgctgGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCCCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTCACGGCGCGGCACCGGGTTACCTGATCGATAAGCAAACCGCCGa > 2:366645/1‑238 (MQ=255) gcgggTCAGTCGTGCGAGGGAGAAATTAGTTTTCACGGACAACACCCACGGCGAAGAAAA‑TACCAGCGTTGC‑CTA‑CCCCGCGTTTCCGCCGGCC‑G‑ACGCACCCTACACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGAc < 2:628787/235‑1 (MQ=255) cagggcgtgagcggaaaaaaTTATGTTATCCCATCAA‑AAACCCCGGGGATGAGA‑TTAACATGTTGGCCGC‑CCCCTCGCTTCTTGCGGGC‑G‑GGGAACCTTTCCCCGCGGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTa < 2:719720/221‑1 (MQ=255) tCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAATGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGAACaaaa > 2:439238/1‑239 (MQ=255) tCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACaaaa > 2:1338707/1‑239 (MQ=255) cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCAcc > 1:989990/1‑239 (MQ=255) cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCAcc > 2:199702/1‑239 (MQ=255) gagaAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACa > 2:555183/1‑238 (MQ=255) atggtgtaaaaggaacacaaacaacCCCATCAATGTAGA‑TTACACCGTGGC‑CCA‑C‑CCCCGCTTGCCGTCGGCGG‑AGGAACCCTCCCCCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCTTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCg < 2:1004136/220‑1 (MQ=255) aaTTAGGTTATACCGTCAAAAACCCCAGGGAAGTAAA‑TTAAACCGTT‑G‑CTACCCCCCCCCTTGCTCCCGGC‑G‑ATCCACCCTTCCCCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGca < 1:882597/239‑1 (MQ=255) gTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTa > 2:987459/1‑158 (MQ=255) gTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTa < 1:987459/158‑1 (MQ=255) taCCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCa > 1:309689/1‑99 (MQ=255) caacaaACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGa > 1:976007/1‑239 (MQ=255) caacaaACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGa > 2:1130795/1‑239 (MQ=255) caacaaACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGa > 2:696762/1‑239 (MQ=255) acaacccccAGCAAGGTAAA‑TTACACCTGTGT‑CTA‑CCCCCCGTTTTCTCCCGGC‑G‑ATCCACCCTCCCCCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGaa < 1:122829/233‑1 (MQ=255) aacaacCCCAGCAAAG‑AGAGCTAAAACGTTGG‑CTC‑CACCGCGCTTTCTGCCGGC‑G‑AGGAACCCTCCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGaa < 1:1318864/239‑1 (MQ=255) acaaACCCCGGGAAGTAAATTTACAACTTTGC‑CCA‑CCCCCCGTTTCCTCCCGGG‑A‑ATGAACCCTCCCCCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGaa < 1:1075542/239‑1 (MQ=255) gCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGaa > 1:1004136/1‑220 (MQ=255) gCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCaa > 2:204065/1‑238 (MQ=255) gCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCaa > 1:217509/1‑238 (MQ=255) gCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCaa > 2:779408/1‑238 (MQ=255) tAGT‑TTACAACTTGGG‑CTA‑CCCCCCGCTTGCTTCCGGC‑G‑AGGCACCTTTCCCCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc < 2:786534/148‑1 (MQ=255) tAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTc > 2:130516/1‑239 (MQ=255) aaCGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCa > 1:338041/1‑238 (MQ=255) cGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTAc > 1:786534/1‑148 (MQ=255) cGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATACGAAGATCGCCAAACTGTTCGATAcacacg > 1:1297865/1‑234 (MQ=255) tGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGACAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGCAAGATCCGAAGATCGCCAAACTGTCCGATACCAACGGCg > 2:492371/1‑239 (MQ=255) tGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGACAAACTGTTCGATACCAACGGCg > 1:152665/1‑239 (MQ=255) gg‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCg > 1:4581/1‑238 (MQ=255) cacCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGaa > 2:449164/1‑239 (MQ=255) acCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCACAGGCGACGGaaa > 2:784702/1‑239 (MQ=255) ccTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc > 2:767450/1‑127 (MQ=255) ccTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc < 1:767450/127‑1 (MQ=255) cTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGaaaa > 1:433230/1‑238 (MQ=255) gcttgcttCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAAc > 1:1094193/1‑223 (MQ=255) tCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCAAAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTaa > 2:341191/1‑238 (MQ=255) ccGGC‑GTATCCAACCTTCCCCGCCGTGACCTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTTTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAAc < 2:217509/239‑1 (MQ=255) tGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTa > 2:654265/1‑239 (MQ=255) | GCGACATAGCGTACTTTTTGCGACAGCGTTTGCCACGCTTATCTCTACACAAACTTTTGCTGCCGATCTGCCGGGCAAAGGCATTACTGTTAATCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGA‑TTACAACGTTGG‑CTA‑CACCTCGCTTGCTTCCGGC‑G‑ATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTA > NC_000913/2807132‑2807601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |