Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,862,673	C→A	16.1%	pseudogene (930/1617 nt)	glvC ←	pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,862,673	0	C	A	16.1%	94.9 / 3.7	86	pseudogene (930/1617 nt)	glvC	pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component
Reads supporting (aligned to +/- strand):  ref base C (37/32);  new base A (2/12);  total (42/44)
Fisher's exact test for biased strand distribution p-value = 8.26e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.03e-01

TGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTA  >  NC_000913/3862437‑3862911                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                          tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAAC‑AACGGTGAAATGAACAGG‑AAAGTAAATTCCAGCG‑GTTCGGTAATT‑CCCCCCAGGATGGC‑GG‑GT‑ACGG‑T‑GGAGGG‑AGT‑GAG‑C‑aa                                                                                                                                                                                                                                                        >  1:238890/1‑239 (MQ=255)            catATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGGCCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGGCATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAG‑c                                                                                                                                                                                                                                                           <  1:280803/226‑1 (MQ=255)              tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑G‑TGCGGG‑GATACGA‑C‑AAG‑CCC‑CCA‑Ctttt                                                                                                                                                                                                                                         >  1:1223493/1‑239 (MQ=255)              tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAAG‑T‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCCCCC‑Ctttt                                                                                                                                                                                                                                         >  1:441208/1‑239 (MQ=255)                   gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAAG‑G‑TGCGGG‑AAA‑TCG‑C‑AAA‑CACCCCC‑CTTTTA‑ccc                                                                                                                                                                                                                                    >  1:953200/1‑238 (MQ=255)                    cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AAGG‑G‑TGCGGG‑AAC‑TAA‑C‑CAA‑CCCCCCC‑CCTTTA‑CCCgg                                                                                                                                                                                                                                  >  1:1288243/1‑238 (MQ=255)                    cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGGAATT‑CCCACCAGCATGGC‑GG‑TT‑AAAG‑G‑TGCGGG‑CAT‑TCC‑G‑AAG‑CCCCCCC‑CTTTTT‑CCCg                                                                                                                                                                                                                                   >  2:1200231/1‑238 (MQ=255)                      tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGGGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑GGCGGG‑GAA‑CCG‑G‑AAA‑CCCGCCA‑CCTTTT‑ccccctt                                                                                                                                                                                                                                >  1:747996/1‑235 (MQ=255)                        gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑G‑TGCGGG‑AAT‑ACG‑A‑CAG‑CCCGCCA‑CCTTTA‑TCCC‑Agttt                                                                                                                                                                                                                             >  2:1286358/1‑239 (MQ=255)                          tGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TTAAAGG‑G‑TGGGGG‑AAG‑AAG‑A‑AAC‑CCCCCCC‑CTTTTC‑CCCC‑Atttc                                                                                                                                                                                                                             >  2:1138748/1‑237 (MQ=255)                            cTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TTCGGG‑GAA‑CAG‑C‑CAA‑CCCCCCACCTTTTC‑CCCG‑TTTTTcgg                                                                                                                                                                                                                          >  1:908361/1‑237 (MQ=255)                                cagtttttaaaaaagacagCGGTAAAACCCAATCAAG‑CACACCCCCCACCCAGTTGCCCACCACCACAAAAGAACAAAATGCCGGCGGAAATGGGGCCCGCCACCCGGGGTTGTACCGAAAACAGC‑AGCGGGAAAAGAAACGGG‑AAGGAAAATTCCAGCG‑GTCGGGTAATC‑CCCCCCAGAAGGGG‑GG‑TT‑AAGG‑T‑GGGGGA‑AAT‑CAA‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑Tg                                                                                                                                                                                                                      <  2:636822/220‑1 (MQ=255)                                 caccGGGATCAGGTTTTGCGATAAACCCGAGTCAAC‑CAGCCCCCCCCCATTGTCGCCCCCAA‑CCCAAAAGAGAAACATTACGGCCGACATGGAGGCCGCCAGCACGGCGTGTACCGCAAACAGA‑AACGGGAAAATGAACAGA‑AAGATAATTCCCGGCG‑GTTCGTTATTC‑CCCCCCTGCATGGG‑GT‑TT‑AAGG‑T‑TGGGGA‑AAC‑AAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCgg                                                                                                                                                                                                                   <  2:506774/236‑1 (MQ=255)                                 cATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑TAGG‑A‑TGCGGG‑AAT‑TAA‑C‑CAA‑CCCCCCC‑CTTTTA‑CCCC‑ACTTTTCGG‑TGCg                                                                                                                                                                                                                    >  1:368161/1‑238 (MQ=255)                                   tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGGAT‑TGCGGG‑‑AT‑CAA‑C‑AAA‑CCCCCCC‑CCTTTA‑CCCC‑ATTTTTCCG‑TGCGGCa                                                                                                                                                                                                                 >  2:688805/1‑239 (MQ=255)                                      ggATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGCGGG‑TT‑AAGG‑G‑TGGGGG‑AGC‑ACG‑C‑AAA‑CCCCCCC‑TTTTTA‑CCCA‑TTTTTCCgggcgggaggg                                                                                                                                                                                                                >  2:1118299/1‑230 (MQ=255)                                       gcaccAGTTTGGCGG‑AAAACCCAATCCATACAGCCCGCCGCCCCTCTCCCCCCCCA‑CACCAAAAAGATCCATTCCGGGAGACTTTGGGGCCGCAAGCCCGGGGGGTCCCGCAAAAAGC‑AGGGGTAAAATGAACAGG‑‑AGGTAAACTCC‑GCGCGGTCGGTAATTCCCCCCCAGCCGGGC‑GG‑TT‑AGGG‑T‑GGGGGC‑AAA‑AAG‑A‑AAG‑TCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTg                                                                                                                                                                                                              <  2:892977/235‑1 (MQ=255)                                           gaGTTGTGCGATAAACCCTACTCAAC‑CCGCCCCCCCCCCATTTCCCCCACCA‑CAAAAAAGAGATACATAACGGTCGACATGGAGGCCGCCAGCAGGGCGTGTACCGCAAACAGC‑AACGGTGAAAGGAAAAGG‑AAGGAAAATCCCAGCG‑GTTCGGTAATC‑CCCACCAGCAGGGG‑GG‑TT‑AAGG‑T‑TGGGGA‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTa                                                                                                                                                                                                         <  2:908361/238‑1 (MQ=255)                                           cAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑TAGG‑G‑TTCGGG‑GAT‑ACG‑C‑AAA‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTTCGG‑Tgggggcgcggaaga                                                                                                                                                                                                         >  1:1141593/1‑229 (MQ=255)                                            aGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑G‑TTCGGG‑GAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTT‑CCCC‑GTTTTTCCG‑TGCGGCAGGGAAGGAc                                                                                                                                                                                                        >  1:990994/1‑239 (MQ=255)                                                                tCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑G‑TGCGGG‑GAT‑AAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTTCGG‑GGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATACCCa                                                                                                                                                                                   >  1:353658/1‑238 (MQ=255)                                                                      cAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AAGG‑G‑TGCGGG‑GAA‑CCG‑C‑AAA‑CCCCCCA‑CCTTTT‑CCCC‑ATTTTTCCG‑TGCGGGAGGGAAGAACATCGC‑CAAAA‑AAATACCCACAGCa                                                                                                                                                                              >  2:270547/1‑238 (MQ=255)                                                                             ccGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑TAGG‑T‑TGCGGG‑AAT‑CAG‑C‑AAA‑CCCGCCA‑CCTTTA‑CCCC‑AATTTTCGG‑GGGGGGAGGGGAGTACAACTC‑CAaaa‑aaaaacccccccgcccaaaacg                                                                                                                                                                      >  2:1085209/1‑220 (MQ=255)                                                                                   aTGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑G‑TGCGGG‑GAT‑CAG‑C‑AAA‑CCCGCCA‑CTTTTA‑CCCC‑CTTTTTCGG‑TGCGGCCGCGAAGTACATCGC‑TCAAA‑AAAATCCCCCGGCACCCAAGA‑ATTTTGa                                                                                                                                                               >  1:312381/1‑239 (MQ=255)                                                                                      ttGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGGAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑TAGG‑T‑TTCGGG‑GAA‑GAA‑C‑AAA‑CCCCCCA‑CTTTTA‑CCCG‑ATTTTTCCG‑TCCGGCCGTGAAGAACATCGC‑TAAAGAAAATCCCCACGCACCCACACA‑ttttttgtt                                                                                                                                                             >  2:505223/1‑235 (MQ=255)                                                                                       tccccACCA‑CACCAAAGAGAACAATGAGGGTGGAAATGGAGGCCGCCAGCACGGGGTGTACCGAAAACAGC‑AACGGTAAAATGAACAGG‑AAGGTAAATCCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGA‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTa                                                                                                                                                           <  1:688805/237‑1 (MQ=255)                                                                                        gcccccccccccaaaaGAGAACCATTCCGGCCGCCATGGAGGCCCCCACCACGGCGTGTACCCAAAAAAGC‑ACCGGTGAAATGAACAGG‑AAGGTAATTTCCAGCG‑GTTGGGTAATT‑CCCACCAGCATGGG‑GT‑TT‑AAGT‑T‑GGCGGA‑AAT‑CAG‑A‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTa                                                                                                                                                           <  1:824551/226‑1 (MQ=255)                                                                                        gCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AATG‑G‑TGCGGG‑GAT‑CAG‑C‑CAG‑CCCGCCA‑CTTTTT‑CCCC‑ATTTTTCCG‑GGCGGCCGGGGAGTACATCGC‑TAAAA‑AAAATCCCACGGCCCCAAAAA‑ATTTTTAGTTa                                                                                                                                                           >  1:274649/1‑238 (MQ=255)                                                                                        gCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAG‑C‑AAA‑CCCGCCC‑CTTTTA‑CCCG‑CTTTTTCCG‑GGCGGCAGTGGAGGTCAACCC‑CAAAA‑AAATGCCCACCGCCCCAAAGA‑TTTTTTAGGTa                                                                                                                                                           >  1:320884/1‑238 (MQ=255)                                                                                            acca‑caccaAAGAGAGACAGCAGGGTCGAAAGTGAGGGCGCGACAGGGGTGATGACCGCAAAAAGA‑AACGGTGAAGT‑AACGGGAAAGGAAAATGCGAGGG‑GTGCGATATTC‑CCCACCAGGAGGGT‑GG‑TT‑AGGG‑G‑TGCGGA‑AAT‑CAG‑A‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTg                                                                                                                                                      <  2:368161/239‑1 (MQ=255)                                                                                            acca‑caacaAAGAGGAACATTACGAGCGAAATGGGGGCCGCCAGCCCGGCGTGTACCGAAAACACA‑AACGGTGAAATGAAAAGG‑AAGGAAAATCCCAGCG‑GTTCGGTAACC‑CCAACCAGGAGGGC‑GG‑TT‑AGGG‑T‑TGGGGA‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTg                                                                                                                                                      <  2:1314339/239‑1 (MQ=255)                                                                                                 caccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑G‑TGCGGG‑GAT‑CAG‑C‑AAA‑CCCCCCA‑CCTTTT‑ACCG‑ATTTTTCCG‑TGCGGCCGTGGAGTACATCCC‑CAAAG‑AAAATCCCCCCGCACCAAAGA‑ATTTTTTGTTAACGTGCA‑gg                                                                                                                                                 >  1:1200607/1‑239 (MQ=255)                                                                                                    caAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAA‑C‑AAG‑CCCGCCA‑CCTTTT‑CCCG‑CTTTTTCGGCTGGGGC‑GGGGAGTACACCAC‑TAAAA‑AAAACACCACCACACCAAACA‑TTTTTgttgttcccgtctgggca                                                                                                                                               >  2:308583/1‑222 (MQ=255)                                                                                                         agaTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑TAGG‑T‑TGCGGG‑GAT‑CAG‑C‑CAG‑CCCCCCC‑CCTTTA‑CCCC‑GTTTTTCGG‑TGGGGCCGGGTAGGACAACGC‑TACAG‑AAAAGACCCCCGCCCCCAAGA‑tttttttgttgacaggccgggcgaaac                                                                                                                                           >  2:444499/1‑216 (MQ=255)                                                                                                            tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑G‑TGCGGG‑GAT‑TAG‑C‑CAG‑GCCGCCC‑CCTTTA‑CCCC‑ATTTTCCCG‑TGCGGCCGTGGAGGACAACGC‑TAAAG‑AAATGCCCCCGGGACCCAAAC‑TTTTTGAGTTACCGCGCA‑AGGCGAAAAccc                                                                                                                                       >  2:1165510/1‑237 (MQ=255)                                                                                                            tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGCAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GGTTT‑AAGT‑T‑TCGGGG‑AAT‑ACC‑C‑AAA‑CCCCCCC‑CTTTT‑‑CTCC‑ATTTTTCGG‑CGCGGGACCCAAAGGCATCGC‑TTCAA‑AAATGACCACCGCACCACACA‑TTTTTTAGCTAcaccgcagagcgtaacccc                                                                                                                                        >  2:10665/1‑220 (MQ=255)                                                                                                              cATTGCGGGCGAAGTGGAGGCCGCCAGCACGGCGTGTACCGAAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATCCCAGCG‑GTTCGGTAATC‑CCCCCCAGCAGGGC‑GG‑TA‑AAGG‑T‑GGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCtt                                                                                                                                   <  1:1118299/239‑1 (MQ=255)                                                                                                                   cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAAG‑G‑TGCGGG‑GAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTTCGG‑GGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCggg                                                                                                                              >  1:432679/1‑239 (MQ=255)                                                                                                                     gTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAAG‑G‑TGCGGG‑GAA‑CAG‑C‑AAGCCCCCCCC‑CTTTTA‑CCC‑‑CTTTTTCGG‑GGCGGCAGTGGAGAACAACCC‑CAAAA‑AAAATCCCCCGGCCCCCAAGA‑ATTTTTAGTTTCCCTGGC‑GGGCAAAAACCCCCTCCCGGGa                                                                                                                             >  2:1343247/1‑239 (MQ=255)                                                                                                                      tCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑GAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑CTTTTTCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGACCCCGGCCCCCAAGA‑ATTTTGTGTTACCGTGCA‑GGGC‑AAAAACGCCCTCCGGGaac                                                                                                                           >  2:914463/1‑239 (MQ=255)                                                                                                                      tCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AAGG‑A‑TGGGGG‑GGC‑CAG‑C‑AAA‑CCCCCCC‑CCTTTT‑CCCGAATTTCCCGG‑GGCGGCGGGGAA‑AACACCGCACAAAC‑AAAT‑CGCACCGTACAAAAAA‑TTTTTGAGGTACACTGGATGGGC‑AAAACGGCTTCCCGGGaa                                                                                                                            >  2:49826/1‑239 (MQ=255)                                                                                                                       cGACATGGAGGCCGCCACAGCGGCGTGCACCGAAAACAGC‑AACGTTGAAATGAACAGG‑AAGTAAAATTCCAGCG‑GTGCGGTAATC‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAG‑C‑AAC‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGaac                                                                                                                           <  2:274649/238‑1 (MQ=255)                                                                                                                       cGACAGTGAGGCCGCCAGCAGGGCGTGTACCACAAACAAC‑AACGTAAAAATAAACGGG‑AAGGTAAGTCCCGGCG‑TTTCGTTAATC‑CCCCCCAGGATGGC‑GG‑TA‑AGGG‑T‑GGCGGA‑AAT‑CAG‑A‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGaac                                                                                                                           <  2:284471/238‑1 (MQ=255)                                                                                                                                    gccAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAAG‑G‑TGCGGG‑GAT‑CAG‑G‑AAA‑CCCCCCA‑CCTTTACCCCG‑TTTTTCGAG‑GGGGGCGGGGAAG‑AAAACGC‑CAAAG‑AAAAGCCCACCGCCCCCAAAA‑ATTTTTTGTTACCGTGCC‑GGGC‑AAAACAGCCTTCCcggcaaaaacattttaacgg                                                                                                             >  2:637816/1‑222 (MQ=255)                                                                                                                                    gccAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑GT‑AAGG‑G‑TGCGGG‑GAA‑CAA‑CAAAA‑CCCCCCC‑TTTTTT‑CCCC‑TTTTTCCGG‑GGGGGC‑GTGGAGAGCAACGC‑TAAAA‑AAAAGCCCCCCGCCCCAAAGACTTTTTTGTTTACCG‑GCC‑GGGCAAAAACCCCCTTCCGGGACAAAGGAtttagagg                                                                                                              >  2:834755/1‑234 (MQ=255)                                                                                                                                        ggacgggggtgacccgaaaCAGCAAAGGGAGAAAGGAAAAGA‑AAGTAAAATCCCGGCG‑GTTCGTAAATC‑CCCCCAAGCAGGGC‑‑G‑TT‑AAGG‑G‑TGGGGGAAAC‑CAG‑C‑AGG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTc                                                                                                          <  2:184499/223‑1 (MQ=255)                                                                                                                                          agggggtgtCCCGCAAACAGA‑AACGGTAAAATGAACAGG‑AAGGTAAATCCCGGGG‑GTTCGGTAATT‑CCCCCCAGCAGGGC‑GG‑TT‑AAGG‑T‑TGCGGA‑AAA‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTc                                                                                                          <  1:338102/231‑1 (MQ=255)                                                                                                                                          acgtcgttcaCCACAAACAGC‑ATCTGTAAAATGAACAGG‑AAGATAAATCCCAGCG‑GTCCGGTAATC‑CCCCCCAGCATGGC‑GT‑TT‑GAGG‑T‑TGGTGA‑AAC‑CAG‑C‑ACG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTc                                                                                                          <  2:159476/227‑1 (MQ=255)                                                                                                                                                    ccGCAAACAAC‑AGGGGAAAAAGGAACGGA‑AGGGAAAATTCCAGCG‑GTGCGGAATTC‑CCCACCAGCGGGGG‑GT‑TT‑AAGT‑T‑GGGGGG‑AAC‑AAG‑A‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTg                                                                                             <  1:444499/239‑1 (MQ=255)                                                                                                                                                      caaaacgcc‑AACGGTGAAAGGAACAGG‑AAGAGAAACTCAAGCG‑TTGGGCTAATT‑CCCACCAGCAGGGC‑GG‑TT‑AGGG‑T‑GGGGGA‑AAA‑CAG‑C‑AAT‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTCCCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa                                                                                           <  2:925732/231‑1 (MQ=255)                                                                                                                                                      acAAACAGC‑AAGGGAAAAAAAAGAAGG‑AGGGTAAATCCCGGCG‑GTGAGGTAATC‑CCCCCGAGCAGGGT‑GT‑TT‑AAGG‑T‑GGCGGG‑AAA‑CAG‑C‑AAC‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa                                                                                           <  2:234251/238‑1 (MQ=255)                                                                                                                                                          aCAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCC‑CCTTTA‑CCCC‑ATTTTCCCG‑TGGGGCCGGGAAGTACATCCC‑TAAAG‑AAAATTCCACCGCCCCCAAAA‑TTTTTTTGTTTACCTGCA‑GGGC‑AAAAACGCCCTCCCGGGACAACGATTTCAACGGCCCCGCGGCCCAACTGAActct                                                                                       >  2:396004/1‑239 (MQ=255)                                                                                                                                                                aaCGGAGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCAGGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAg                                                                                  <  1:1265340/239‑1 (MQ=255)                                                                                                                                                                    gagaaaaaaaCGGG‑AAGGAAAACCCCGGCG‑TTTC‑GTAATTCCCCACCAGCAGGGG‑GG‑TT‑AGGG‑T‑GGGGGG‑AAC‑CAG‑A‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtg                                                                               <  2:441208/230‑1 (MQ=255)                                                                                                                                                                     tGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑CT‑AACG‑T‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCC‑CTTTTA‑CCCC‑ACTTTCCGG‑TGCGGCAGTGAAAAACAACCC‑TAAAA‑AAAAGCCCCCGCCCCCAAAGA‑CTTTTTTGTTACCCTCCA‑CGGC‑AAAACCGCCTTCCGGTGACAACCCTTTCAACGGGCCGGCCCGCCAACtataacctttaagagac                                                                              >  2:1080034/1‑222 (MQ=255)                                                                                                                                                                       aaaTGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑TAAG‑T‑TGCGGG‑GAT‑CAG‑C‑AAG‑CCCGCCC‑CTTTTA‑CCCC‑ATTTTCCCG‑GGGGGGCGGGAAAGACAACGC‑TCAAA‑AAATACCCAAGGCCCCCAAAA‑TTTTTGTGTTACCCCGCA‑GGGG‑AAAACCCCCCTCCGGGGACAACCGCTTCAACGGCGCGGGGCTCCAAcccgacacattcagaatcag                                                                            >  2:855493/1‑219 (MQ=255)                                                                                                                                                                        aaggacagtg‑AAGTTAATTCCCGGCG‑GTCCGCAAACC‑CCCACCGCCGTGGG‑GT‑TA‑AAGG‑T‑TGGGGA‑AAG‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg                                                                          <  2:1141593/230‑1 (MQ=255)                                                                                                                                                                        aaggAACAGG‑AAGGAAAATCCCAGCG‑GTTCGTTAATT‑CTCACCAGCAGGGC‑GT‑TT‑AGGG‑T‑GGCGGG‑AAT‑CAG‑C‑AAC‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg                                                                          <  1:1006323/236‑1 (MQ=255)                                                                                                                                                                        aagaaaCAGG‑AAGGAAAATTCCAGCG‑GTTCGTTAATC‑CCCCCAAGCAGGGC‑GG‑TT‑AAGG‑T‑GGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg                                                                          <  1:914463/235‑1 (MQ=255)                                                                                                                                                                            aaCAGG‑AAGGTAAATTCCAGCG‑GTGCGGTACTC‑CCCACCAGCAGGGC‑GG‑TT‑AAGG‑T‑TGCGGA‑AAC‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc                                                                        <  1:1085209/237‑1 (MQ=255)                                                                                                                                                                            aaCAGG‑AAGGTAAATCCCAGCG‑GTTCGGTAATC‑CCCCCCAGCATGGG‑GG‑TT‑AAGG‑T‑GGGGGA‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGccc                                                                       <  1:165303/238‑1 (MQ=255)                                                                                                                                                                              cAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑G‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTTCGG‑GGCGGCAGTGAAGTACATCGC‑CAAAG‑AAAAGCCCACGGCACCAAAGA‑TTTTTTAGTTACCGTGCC‑GGGC‑AAAAACGCCCTCCCGGGACAACGATTTCAACGGCTCGGGGCCCAAAACTAACTCTTTTCGATGCTCGGccccgc                                                                    >  2:682382/1‑236 (MQ=255)                                                                                                                                                                                                                  ccccggCATGGG‑GG‑TT‑AGGG‑T‑TGGGGA‑AAT‑CAG‑A‑AAC‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                   <  1:505223/234‑1 (MQ=255)                                                                                                                                                                                                                  ccccggCATGGG‑GG‑TT‑AGGG‑T‑GGGGGG‑ATA‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TTCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                   <  2:1219011/234‑1 (MQ=255)                                                                                                                                                                                                                  caccaGCATGGC‑GG‑TT‑AGGG‑T‑GGCGGG‑AAC‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                   <  1:623841/239‑1 (MQ=255)                                                                                                                                                                                                                  cacaaGCGTGGG‑GG‑TG‑AAGG‑T‑TGCGAG‑AAA‑CAG‑C‑AAC‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                   <  2:1130817/239‑1 (MQ=255)                                                                                                                                                                                                                  cacaaGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAA‑CAG‑A‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                   <  1:855493/239‑1 (MQ=255)                                                                                                                                                                                                                  cacaaGCAGGGC‑GA‑TT‑AGAG‑T‑CGCGGG‑AAT‑CAG‑C‑AAG‑GCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                   <  1:1308047/239‑1 (MQ=255)                                                                                                                                                                                                                   cacaagtgggcggg‑TT‑AAGG‑T‑GGGGGA‑AAT‑CAG‑C‑AGG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                   <  1:1200231/227‑1 (MQ=255)                                                                                                                                                                                                                    ccaGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTg                                                                                                                                                      >  1:884646/1‑124 (MQ=255)                                                                                                                                                                                                                     ccccggtaggggtggtaggg‑T‑TGGGGA‑AAG‑CAA‑C‑AAC‑CCCGCCA‑CTGGGA‑CCCG‑AGTGGCCGG‑GGCGGCAGGGAAGTACAGCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCTGTTCCTCTGTGTGCCGCCTTCCTCAGCTTccttac                                   <  1:444949/221‑5 (MQ=255)                                                                                                                                                                                                                       cgggcaggggggt‑AAGG‑TGTGCGGA‑AAT‑CAG‑A‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa                                 <  1:396004/227‑1 (MQ=255)                                                                                                                                                                                                                          ggtgcggggt‑AAGG‑T‑GGGGGG‑AAA‑CAG‑A‑AAG‑ACCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAg                              <  2:747996/229‑1 (MQ=255)                                                                                                                                                                                                                             c‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa                         <  1:270547/238‑1 (MQ=255)                                                                                                                                                                                                                             c‑GG‑TT‑AAGG‑T‑GGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa                         <  1:857521/238‑1 (MQ=255)                                                                                                                                                                                                                                gtgtaaggg‑T‑TGGGAG‑AAT‑AAG‑A‑ACG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTGCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa                         <  2:953200/231‑1 (MQ=255)                                                                                                                                                                                                                                 ggt‑AAGG‑G‑TGCGGG‑AAA‑CCGCC‑AAC‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAAc                        <  2:320884/236‑1 (MQ=255)                                                                                                                                                                                                                                     aaGG‑T‑GGCGGC‑AAA‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTcc                   <  2:1288243/239‑1 (MQ=255)                                                                                                                                                                                                                                       gg‑T‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCACCAGCTGCCGGACCAAAGATAAACTGTCCGt                 >  1:564674/1‑239 (MQ=255)                                                                                                                                                                                                                                        g‑T‑TGGGGA‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGt                 <  1:1343247/238‑1 (MQ=255)                                                                                                                                                                                                                                          t‑tGCGGA‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGt                 <  1:886557/237‑1 (MQ=255)                                                                                                                                                                                                                                              cGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AACTGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACGACCTTCCGGGAACAACGATTTCACCGGCTCGGGGCTCAAACTGACCGCTTGTCGCTGCTGCGCCCAGGCCTTCTGAACTCCGCATTCAACACCTGCCGGAGCAACGAAAAACTCTGCGTAGATg            >  2:721404/1‑239 (MQ=255)                                                                                                                                                                                                                                              cGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCACAAGCTGCCGGACCCAAGATAAACTGTCCGTAGATg            >  2:125505/1‑239 (MQ=255)                                                                                                                                                                                                                                                  aaaT‑TAG‑C‑AAC‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGaa          <  1:1002779/237‑1 (MQ=255)                                                                                                                                                                                                                                                    aagcAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAg         <  1:671317/235‑1 (MQ=255)                                                                                                                                                                                                                                                     t‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTa                                                                   >  1:675449/1‑178 (MQ=255)                                                                                                                                                                                                                                                     accAG‑A‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAgtg       <  1:1217169/237‑1 (MQ=255)                                                                                                                                                                                                                                                           c‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCAAGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTa  >  2:1251530/1‑239 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                          TGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAT‑CAGACCTCCGCCCATGTTGCCCACCA‑CACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGC‑AACGGTGAAATGAACAGG‑AAGGTAAATTCCAGCG‑GTTCGGTAATT‑CCCACCAGCATGGC‑GG‑TT‑AAGG‑T‑TGCGGG‑AAT‑CAG‑C‑AAG‑CCCGCCA‑CTTTTA‑CCCG‑ATTTTCCGG‑TGCGGCAGTGAAGTACATCGC‑TAAAG‑AAATGCCCACGGCACCAAAGA‑TTTTTGAGTTACCGTGCA‑GGGC‑AAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTA  >  NC_000913/3862437‑3862911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑