New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2706124 =	172 (1.060)	3 (0.020)	3/490	NT	1.8%	coding (999/1800 nt)	lepA	back‑translocating elongation factor EF4, GTPase
	?	NC_000913	2706188 =	166 (1.060)					coding (935/1800 nt)	lepA	back‑translocating elongation factor EF4, GTPase
Rejected: Frequency below/above cutoff threshold.

CGTCTGGGCATCTTCACGCCGAAACAGGTTGACCGCACTGAACTGAAATGTGGCGAAGTAGGCTGGCTCGTATGTGCGATTAAAGATATCCACGGCGCTCCAGTCGGCGATACCTTAACGCTGGCGCGTAATCCGGCAGAAAAGGCGCTGCCTGGCTTTAAGAAAGTCAAACCGCAGGTATACGCCGGTCTGTTCCCGGTAAGTTCCGACGACTATGAAGCCTTCCGTGACGCGCTGGGTAAACTCAGCCTGAACGATGCCTCACTGTTCTATGAGCCGGAAAGCTCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2706417‑2706124 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcgTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACTTCGCCACATTTCAGTTCAGTGCGGT‑CAACCTGTTTCGGCGTGAAGATGCCCAGACGGTCGGCGTTATAGGTCTGCCCGGTACTCATGACTTTCACTTTGTCGCCCTTACGCA  >  NC_000913/2706188‑2706473                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       cgttaggaaacctacagaCCGAAACAGGTTGACGGCACATAACGTAAATGGGGCGAAGTAGGCTGGCTCGAATGTGAGATTAAAGATGTCCACGGCGCTCCAGTCGTCGATACCTTAACGCTGGCGCGTAATCCGGCAGAAAAGGCGCTGCCTGGCTTTAAGAAAGTCAAACCGCAGGTATACGCCGGTCTGTTCCCGATAAGTTCCGACGACTATGAAGCCTTCCGTGACGCGCTGGGTAAACTCAGCCTGAACGATGCCTCACTGTTCTATGAGCCGGAAAGCTCCA                                                                                                                                                                                                                                                                                                      <  1:1042938/271‑1      GGGCATCTTCACGCCGAAACAGGTTGACCGCACTGAACTGAAATGTGGCGAAGTAGGCTGGCTCGTATGTGCGATTAAAGATATCCACGGCGCTCCAGTCGGCGGTACCTTAACGCTGGCGCGTAATCCGGCAGAAAAGGCGCTGCCTGGCTTTAAGAAAGTCAAACCGCAGGTATACGCCGGTCTGTTCCCGGTAAGTTCCGACGACTATGAAGCCTTCCGTGACGCGCTGGGTAAACTCAGCCTGAACGATGCCTCACTGTTCTATGAGCCGGAAAGCTCCAGCGCG                                                                                                                                                                                                                                                                                                 <  1:821661/289‑1       gtaatgTTCACGCCGAAACAGGTTGACCGCACTGAACTGAAATGTGGCGAAGTAGGCTGGCTCGTATGTGCGATTAAAGATATCCACGGCGCTCCAGTCGGCGATACCTTAACGCTGGCGCGTAATCCGGCAGAAAAGGCGCTGCCTGGCTTTAAGAAAGTCAAACCGCAGGTATACGCCGGTCTGTTCCCGGTAAGTTCCGACGACTATGAAGCCTTCCGTGACGCGCTGGGTAAACTCAGCCTGAACGATGCCTCACTGTTCTATGAGCCGGAAAGCTCCAGCGCG                                                                                                                                                                                                                                                                                                 <  2:1319173/282‑1             TTCACGCCGAAACAGGTTGACCGCACTGAACTGAAATGTGGCGAAGTAGGCTGGCTCGTATGTGCGATTAAAGATATCCACGGCGCTCCAGTCGGCGATACCTTAACGCTGGCGCGTAATCCGGCAGAAAAGGCGCTGCCTGGCTTTAAGAAAGTCAAACCGCAGGTATACGCCGGTCTGTTCCCGGTAAGTTCCGACGACTATGAAGCCTTCCGTGACGCGCTGGGTAAACTCAGCCTGAACGATGCCTCACTGTTCTATGAGCCGGAAAGCTCCAGCGCGTCACGGA                                                                                                                                                                                                                                                                                          <  2:1025210/289‑1                 CGCCGAAACAGGTTGACCGCACTGAACTGCAATGTGGCGAAGTAGGCTGGCTCGTATGTGCGATTAAAGATATCCACGGCGCTCCAGTCGGCGATACCTTAACGCTGGCGCGTAATCCGGCAGAAAAGGCGCTGCCTGGCTTTAAGAAAGTCAAACCGCAGGTATACGCCGGTCTGTTCCCGGTAAGTTCCGACGACTATGAAGCCTTCCGTGACGCGCCGGGTAAACTCAGCCTGAACGATGGACCACTGTTCTATGAGCCGGAACGCTCCCGCcggctgcgcattg                                                                                                                                                                                                                                                                                       >  1:1319173/1‑275                                                                            GCGATTAAAGATATCCACGGCGCTCCAGTCGGCGATACCTTAACGCTGGCGCGTAATCCGGCAGAAAAGGCGCTGCCTGGCTTTAAGAAAGTCAAACCGCAGGTATACGCCGGTCTGTTCCCGGTAAGTTCCGACGACTATGAAGCCTTCCGTGACGCGCTGGGTAAACTCAGCCTGAACGATGCCTCACTGTTCTATGAGCCGGAAAGCTCCAGCGCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTTCGGTTTGATTTTCT                                                                                                                                                                                                                           >  2:871438/1‑289                                                                                         gCCACGGCGCTGCCGTCGGCGATGCCTTAACGCTGGCGCGTAGTCCGGCAGAAAAGGCGCTGCCTGGCTTTAAGAAAGTCAAACCGCAGGTATACGCCGGTCTGTTCCCGGTAAGTTCCGACGACTATGAAGCCTTCCGTGACGAGCTGGGTAAACTCAGCCTGAACGATGCCTCACTGTTCGATGAGCCGGAAAGCTCCAGCGCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGC                                                                                                                                                                                                                <  1:871438/286‑1                                                                                                                                                                                                                                                                                                  GCGCGTCACGGAAGGCTTCATAGTCGTCGGTACTTACCGGGCACAGACCGGCGTATACCTGCGGTTTGACTCTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTCCGCGCCAGCGTTAAGGTATCGCCGACTGGAGGGCCGTGGATACCTTTAATCGCACATACGAGCCAGCCTACCTCGCCACACTTCAGTTCAGTGCGGT‑CAACCTGTTTCGGCGTGAAGATGCCCAGCCGGTCGGCGTTATCGGTCTGCCCGGTACTCAGTCCTTTCACTTTGTCCCCCTTAC     >  1:449051/1‑288                                                                                                                                                                                                                                                                                                  GCGCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACTTCGCCACATTTCAGTTCAGTGCGGT‑CAACCTGTTTCGGCGTGAAGATGCCCAGCCGGTCGGCGTTATAGGTCTGCCCGGTACTCATGACTTTCACTTTGTCGTCCTTACG    >  2:847189/1‑289                                                                                                                                                                                                                                                                                                  GCGCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACTTCGCCACATTTCAGTTCAGTGCGGT‑CAACCTGTTTCGGCGTGAAGATGCCCAGACGGTCGGCGTTATAGGTCTGCCCGGTACTCATGACTTTCACTTTGTCGCCCTTAC     >  2:1224706/1‑288                                                                                                                                                                                                                                                                                                  GCGCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACTTCGCCACATTTCAGTTCAGTGCGGT‑CAACCTGTTTCGGCGTGAAGATGCCCAGACGGTCGGCGTTATAGGTCTGCCCGGTACTCATGACTTTCACTTTGTCGCCCTTAC     >  2:763677/1‑288                                                                                                                                                                                                                                                                                                  GCGCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACTTCGCCACATTTCAGTTCAGTGCGGT‑CAACCTGTTTCGGCGTGAAGATGCCCAGACGGTCGGCGTTATAGGTCTGCCCGGTACTCATGACTTTCACTTTGTCGCCCTTAC     >  1:1284660/1‑288                                                                                                                                                                                                                                                                                                  GCGCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGGGGATAACTTTAATCGCCCATACGACCCAGCCTACTTCGCCACATTTCAGTT‑ACGGCGGTGCAACCTGTTGCGGCGTGAAGACGCCCAGACGGGCGGCGTTATAGGTGTGCCCGGTACCCAGGCATTTCACTTTGTCGCCGTTcc     >  1:72507/1‑286                                                                                                                                                                                                                                                                                                    GCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGCACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACGTCGCCACATTTCAGTTCAGTGCGGT‑CAACCTGTTTCGGCGTGAAGATGCCCAGACGGTCGGCGTTATAGGTCTGCCCGGTACTCATGACTTTCACTTTGTCGCCCTTACGCA  <  2:21775/289‑1                                                                                                                                                                                                                                                                                                    GCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACTTCGCCACATTTCAGTTCAGTGCGGT‑CAACCTGTTTCGGCGTGAAGATGCCCAGACGGTCGGCGTTATAGGTCTGCCCGGTACTCATGACTTTCACTTTGTCGCCCTTACGCA  <  1:346094/289‑1                                                                                                                                                                                                                                                                                                    GCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACTTCGCCA                                                                                                             <  1:249127/183‑1                                                                                                                                                                                                                                                                                                    GCGTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACTTCGCCA                                                                                                             >  2:249127/1‑183                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGTCTGGGCATCTTCACGCCGAAACAGGTTGACCGCACTGAACTGAAATGTGGCGAAGTAGGCTGGCTCGTATGTGCGATTAAAGATATCCACGGCGCTCCAGTCGGCGATACCTTAACGCTGGCGCGTAATCCGGCAGAAAAGGCGCTGCCTGGCTTTAAGAAAGTCAAACCGCAGGTATACGCCGGTCTGTTCCCGGTAAGTTCCGACGACTATGAAGCCTTCCGTGACGCGCTGGGTAAACTCAGCCTGAACGATGCCTCACTGTTCTATGAGCCGGAAAGCTCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2706417‑2706124 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcgTCACGGAAGGCTTCATAGTCGTCGGAACTTACCGGGAACAGACCGGCGTATACCTGCGGTTTGACTTTCTTAAAGCCAGGCAGCGCCTTTTCTGCCGGATTACGCGCCAGCGTTAAGGTATCGCCGACTGGAGCGCCGTGGATATCTTTAATCGCACATACGAGCCAGCCTACTTCGCCACATTTCAGTTCAGTGCGGT‑CAACCTGTTTCGGCGTGAAGATGCCCAGACGGTCGGCGTTATAGGTCTGCCCGGTACTCATGACTTTCACTTTGTCGCCCTTACGCA  >  NC_000913/2706188‑2706473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.