New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	781577 =	46 (1.020)	24 (0.550) +GAAG	3/276	6.6	36.2%	noncoding (1/76 nt)	lysQ	tRNA‑Lys
	?	NC_000913	= 2521004	41 (0.910)					noncoding (76/76 nt)	valU	tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.

AACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCT  >  NC_000913/2520862‑2521146                                                                                                                                               |                                                                                                                                                aacAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACccacca                                                                                                                                                 >  1:488148/1‑143 (MQ=255) aacAATCTCTTTAGAAAATGCTTTGACTCACTTTGACCTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCGCCCTCACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACccacca                                                                                                                                                 <  1:298197/143‑1 (MQ=25)          tgtgtcaaaTGCGCTGACCCGTCTTGAACCCTCCCTTGAATGCGACTCCAAACAGCGGGGGTGATTAGCTCAGCTGCGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTa                                                                                                                                        <  2:64936/137‑1 (MQ=18)              gAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTa                                                                                                                                    >  1:421440/1‑143 (MQ=255)                     cgtttccTCATTTGGAACGCTCCCTAGCATCCGATTCCACACCGCTGGGGTGATTAGCTCAGCTGGGATAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTccg                                                                                                                             <  2:211574/137‑1 (MQ=18)                        tGACTCATTTTGAACTCTCCCTATAATGCGACTCAACACGGCTGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTccgccg                                                                                                                          <  1:531516/143‑1 (MQ=255)                           cTCATTTTGAACTCTCCCGATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCgtgt                                                                                                                       <  1:471808/143‑1 (MQ=255)                            tCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTa                                                                                                                      >  1:209279/1‑143 (MQ=255)                                tttGAACGCTCCCTATAGTGCGACTCCACACAGCGGGGGTGATTAGCGCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGTGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCaa                                                                                                                  <  2:81436/143‑1 (MQ=255)                                      ctctCCCTATAATGCGTCTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAAtt                                                                                                            <  1:404707/143‑1 (MQ=255)                                         tcCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGGAATTgag                                                                                                         >  1:243421/1‑143 (MQ=255)                                          cccTATAATGCGACTCCACACAGCGGGGGTGACGAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTgaga                                                                                                        <  1:608386/143‑1 (MQ=255)                                                 aTGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGt                                                                                                 >  1:9014/1‑143 (MQ=255)                                                     gACTCCACAGAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGAtt                                                                                             <  1:596045/143‑1 (MQ=255)                                                          cacacaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTCGCTGTAGTCTCCGCCGTGAAGCAAGCAACAGAGCAGTAGGGCATCAGCTc                                                                                        >  2:643342/1‑143 (MQ=17)                                                             acaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTTCTGTAGTCTCCGCCGTGTAGCAGGAAACTGAGAAGCGGGTGATTGGCGCAGc                                                                                     >  1:564061/1‑143 (MQ=21)                                                                gCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTg‑g                                                                                 <  1:480096/143‑1 (MQ=255)                                                                  gtagcggATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑Gga                                                                               <  1:322071/137‑1 (MQ=255)                                                                  gggggTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGCCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑Gga                                                                               >  1:99724/1‑143 (MQ=255)                                                                    gggTGATTAGCGCAGCTGGGAGAGCACCTCCCTTACAAGGTGGGGGTCGGCCGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑Ggaga                                                                             <  2:145703/143‑1 (MQ=255)                                                                          ttAGCCCAGCTGGGAGAGCACCTCCCTTACAATGAGGGGGTCGGCCGTTCGATCCCGTCATCACCCACCAACCACTTTATGTATGCTCCGCCGGGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCt                                                                       <  1:729247/143‑1 (MQ=25)                                                                                cAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTa                                                                 <  1:542371/143‑1 (MQ=255)                                                                                 aGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCttcc                                                                >  1:160080/1‑141 (MQ=255)                                                                                 aGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTAc                                                                <  1:500935/143‑1 (MQ=255)                                                                                               cTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCCCTCTGACAACCAGGGGGGcgg                                                  >  1:661880/1‑143 (MQ=37)                                                                                                 cccTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTCCTCGACGTAGTCGCCCCCGGGTAACAGGAAAAGGAGACGAGGGTGAGTAGCTC‑GCGGCGGAGAGCGCATCCCTTACAAAGAGGGGGtggagg                                                >  2:420404/1‑138 (MQ=9)                                                                                                    ttACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGtt                                             <  1:643667/143‑1 (MQ=255)                                                                                                        aaGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACGTTATGTAGTCTCCGCGGTATAGCAAGAGATTGAGAAGTGGGTGAGTAGCGCAGCAG‑GGAGAGCACCGCACATACAGTACGGGGGCGGGCGGATCGag                                         >  2:26150/1‑142 (MQ=21)                                                                                                           gaggGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATccc                                      <  1:607548/143‑1 (MQ=255)                                                                                                                   cggcggTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGGCGCCGGTGGGATGCCGtcctccc                              >  2:378731/1‑141 (MQ=37)                                                                                                                    ggcggTTCGATCCCGTCATCACCCACCAACTCCTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGCAGCTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGTGCGGGCGGGCCGATCCCGTCCTcccc                             >  2:573808/1‑143 (MQ=25)                                                                                                                    ggcggTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCGCAGCTG‑GGAGAGCACCTCCCTCACAAGGAGGGGGTCGGCGGTTCGATCCCGtcacaagc                             >  2:190787/1‑138 (MQ=255)                                                                                                                     gcggTTCGATCCCGTCATCACCCACCAACTACTTTCTGTAGTCTCCGCCGTGTAGCAAGCAATTCAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGGCGCCGTTTCGATCCCCCCATccccc                            >  2:509607/1‑143 (MQ=25)                                                                                                                     gcggTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATcaccc                            >  1:499737/1‑143 (MQ=255)                                                                                                                         ttCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACccacca                        >  1:306945/1‑143 (MQ=255)                                                                                                                           cGATCCCGTCATCATCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACt                      >  1:36451/1‑143 (MQ=255)                                                                                                                           cGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCCCCTCCCTTACAAGGAGGGGGACGGCGGTTCGACACCGTCCTcgccccccgcc                      >  2:645034/1‑140 (MQ=25)                                                                                                                           cGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGCGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACt                      >  1:212692/1‑143 (MQ=255)                                                                                                                            gATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACtt                     >  1:370229/1‑143 (MQ=255)                                                                                                                             aTCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACttt                    >  1:453373/1‑143 (MQ=255)                                                                                                                                 cGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCg                >  1:93326/1‑143 (MQ=255)                                                                                                                                       cacccaccAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGACGGTTCGATCCCGTCATCACCCACCACTTGCTccccctcg          >  2:260982/1‑139 (MQ=255)                                                                                                                                               aaCTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCt  <  1:684599/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                AACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTG‑GGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCT  >  NC_000913/2520862‑2521146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.