| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1755758 | 2 (0.050) | 29 (0.690) | 23/284 | 0.9 | 93.5% | coding (61/1413 nt) | pykF | pyruvate kinase I |
| ? | NC_000913 | = 2102943 | NA (NA) | intergenic (‑32/+1) | insH1/wbbL | IS5 transposase and trans‑activator/pseudogene, lipopolysaccharide biosynthesis protein | |||||
CTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATA > NC_000913/2102810‑2103084 | ctctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCt < 1:414792/143‑1 (MQ=32) ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTaa < 1:21806/143‑1 (MQ=34) ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTaa < 1:386126/143‑1 (MQ=34) ctTTTCTGGGCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTaa < 1:454779/143‑1 (MQ=21) cTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACAAGATCACATATCAGGGACTCGTTCGCACCT‑TCCTTAATCcctaacctaa > 1:118625/1‑143 (MQ=255) ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAAt < 2:574430/143‑1 (MQ=255) tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAACAAAATCAGa > 1:77848/1‑143 (MQ=255) tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGaaa > 2:557657/1‑143 (MQ=255) gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTCG‑ACGCTTCTGGGGTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAAt > 2:167692/1‑143 (MQ=17) gCGGAGGTAAGTTGATGACTCATGATGAACCCTGTTTTGTGGCTAGAGATGACAAACATGATCTCATATTAGGGACTTGTTCGCACCT‑TCCTTAATCTCTAACATAAATGAAACAATAGCATCCGAACGAACAGGAAATTTTc > 1:327763/1‑143 (MQ=17) gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTAATAGCATGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAACTTTc > 2:104017/1‑143 (MQ=255) aGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTAc < 1:285134/143‑1 (MQ=255) aaGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaa > 1:588727/1‑143 (MQ=255) ttGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCCAACATAAATGACACACTAAAATCAGAAAGCACCGGAAATTTTCTTCCGGaataa > 1:263002/1‑143 (MQ=255) gatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATc > 2:468043/1‑143 (MQ=255) tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATGAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATCAATGGCCCACTAAAATCGGAAAGCACAGGAAATTTGCGTACGGAATAATCATGTaa > 2:611116/1‑143 (MQ=21) tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACGCAATAAAATCAGAAAGCACATGAAATTTTCTTACGGAATAAGCATGTaa > 2:442995/1‑143 (MQ=255) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGAATTCGc > 1:479527/1‑143 (MQ=255) gTTCTATGCCTCCAGATGACAAACATTGTCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCTTATCATAAATGACACAATAAAAGCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCAt < 2:586833/143‑1 (MQ=37) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGCCACAATAAAATCAGAAAGCACATGAAATTTTCTTACGCAATAATCACATAAAGATTTccccacacctc > 1:302534/1‑133 (MQ=25) gaTGGCTCCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGAAACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCg < 2:276563/142‑1 (MQ=255) aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTCACATACATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAAACATGTACAGATTTCGCTTCATCTCgg > 2:234608/1‑143 (MQ=255) gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAAc > 1:237221/1‑143 (MQ=255) tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAg < 1:299738/143‑1 (MQ=255) tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCCTCATCTCGTAACAg > 1:434209/1‑143 (MQ=255) ccAGACTACACACCTCATCTCCTATCAGGTACTTGTTCGCACCT‑TCCTTAATCCCTAACCTAACTGACACAACAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAgg < 1:513948/143‑1 (MQ=255) aGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACACTAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATAATCTAAAGATTTCGCATAATCTCGGAACAgaaa > 1:202631/1‑140 (MQ=37) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATaa < 2:552640/143‑1 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAAt < 2:179154/143‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATACTgca > 1:479352/1‑141 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTa > 2:348168/1‑143 (MQ=255) gATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTaaaa < 1:167692/143‑1 (MQ=255) tctcATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGACCAGGCATAATGTACTAAAAGc > 2:278479/1‑143 (MQ=255) atatCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATaa > 1:527182/1‑143 (MQ=255) atCAGGGACTTGTCCGCACTT‑GCCTTACGCCCTAGCATAAATGACACAATAAGATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTACAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACg < 1:254277/143‑1 (MQ=255) gggACTTGTTCGCACCT‑TCCTTAATCCCTAACATAGATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAAACATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTa < 1:558308/143‑1 (MQ=255) tCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAACATCAGAAAGCACAGGAAATTTTCTTACGGCATACTCATGTAAAGATTTCGCTTCATCTCCGAACAGGCATAATGTACTACACGCACAACGCTTCCTTTCGACa > 1:82765/1‑143 (MQ=255) gCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACata > 1:242712/1‑143 (MQ=255) t‑tccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTaa < 2:308854/143‑1 (MQ=255) t‑tccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTaa < 2:77848/143‑1 (MQ=255) ccttACTCCCTAACATCCATGAATCAATTATATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAata < 1:669602/143‑1 (MQ=255) ccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAATATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAata < 2:488176/143‑1 (MQ=255) | CTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCT‑TCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATA > NC_000913/2102810‑2103084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |