Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,151,6860GT55.9% ‑4.3 / 19.3 35intergenic (+40/+25)yegJ/yegKuncharacterized protein/ser/thr phosphatase‑related protein
Reads supporting (aligned to +/- strand):  ref base G (11/4);  new base T (6/13);  total (18/17)
Fisher's exact test for biased strand distribution p-value = 3.66e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-02
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

TATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTAC‑GGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTGTTGTCTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACC  >  NC_000913/2151448‑2151914
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                      
tATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTAC‑GGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑ttg                                                                                                                                                                                                                                        <  2:1504018/239‑1 (MQ=255)
tATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTAC‑GGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑ttg                                                                                                                                                                                                                                        <  1:224474/239‑1 (MQ=255)
                               gTTAAAAACGTAGAAGATGGCGGGGAGTGGAAAATAAAAAAAGAAGATATTACAGACGGGATGTATAAGGGGGGAGATAAAATGTAC‑GGCGTTTATACGTTTGATCTTTTATGGCTCACCTTACAAAAAAAGGAACCGGACGAGAAAAGAGAAAAATTATTTCGCAAATCGGCCTTTATATTTTTTGTTAAAG‑CGGGGGG‑TTGAA‑TTGTTGTCTT‑CAA‑CCGCCATGAGAAACTCActct                                                                                                                                                                                                       <  2:1559765/239‑1 (MQ=255)
                                  aCAAAGGAAGAATAGGGCAGGGGGGGAAAAAACAAAAAAGAAGTTATTTCAGATTGGTTGTTTCCG‑GGGGGGAAAAAAATTACGGGCGTTTATACAATTGATCTTTTATTGGTCCCCAACAAAAAAGAAGAAGCGGACGAGCAAAGAAAAAAATTAGTTCGATAATCCGCCTTTATATTTTTTTTTAAAA‑CGGGGGG‑TGAAA‑TTGTTGTTTT‑AAA‑CCGCCATGAGAAACTCACTCTGcc                                                                                                                                                                                                    <  2:1158713/239‑1 (MQ=255)
                                            aaTATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTAC‑GGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑ttg                                                                                                                                                                                                                                        <  1:61952/195‑1 (MQ=255)
                                                                                                          aaTAAAATTCAC‑GGCTGTTAAACCATTGCTTCTTTTTTGCTCACCAACCAAAAAAAAAGACCTCACGAAGAAAAAAAAATATTCTTTCCTTAACCGCTCGTTAT‑TTTATTGTTAAAA‑ACGGGGG‑GTAAA‑TTTTTTTCTA‑AAACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCttt                                                                                                                            <  2:1776666/238‑1 (MQ=255)
                                                                                                                                     tGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTGTTGTCTT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGGGCCAACGTTTTATCATCATCCGCACGCTCGTTTACCGCCGGGCTGGACAAAAAATGCTTTaa                                                                                                                          >  1:1545306/1‑215 (MQ=255)
                                                                                                                                                 ggTCACCTATCCAAAAGAAGAAGCCGACGAGCAAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑CTGAA‑ATCTTTTTTT‑TAA‑CCGCCCCGAGAAACTCCCTCTGCCCACAACGCCAAGGTCAACGTTTTATCATCATCCGTACCGCCGTTTATCCCCCCGCGGGACAAAAACTACTTTAACCAATACGGTAATAAATAGAGTTGTTCCTGCggt                                                                                        >  2:1476080/1‑235 (MQ=255)
                                                                                                                                                  gTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑ttg                                                                                                                                                                                                                                        <  1:1662319/94‑1 (MQ=255)
                                                                                                                                                  gTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTGTTTTCTT‑TAA‑CCGCCATGGGAAACATACTCTGCCCACAACGCCAGTGCCAACGTTTTTTTATTATCCGTACGCTCCTTTACCCCCGGGCTGGACAAAAAATGGTTTTACAAATTAGGGAATAAATAGAGGTTTTCTTGCggt                                                                                        >  2:74368/1‑234 (MQ=255)
                                                                                                                                                   tCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTTAA‑TTTTTTTCTT‑TAA‑ACGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCCTCCGTa                                                                                                                                                                >  1:1296111/1‑163 (MQ=255)
                                                                                                                                                    cACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTGTTTTCTT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCCCCGGGCTGGACAAAAAATGCTTTAACAATTCAGGgaat                                                                                                             >  1:1431806/1‑213 (MQ=255)
                                                                                                                                                       cTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTTAA‑TTGTTGTCTT‑TAA‑ACCCCATGAGAAAATCACTCTGCCCACAGCGCCAGGGCCAACGGTTTatc                                                                                                                                                                          >  1:2283729/1‑149 (MQ=255)
                                                                                                                                                         aTCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTGTTGTCTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGc                                                                                                                                                             >  1:266051/1‑160 (MQ=255)
                                                                                                                                                          tCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTGTTGTCTT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAACGCCAGTGCCCACGGTTTATTATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTTACAATTTAGGTAATAAATCGAGTTGTTCCTTCGTTGCTggcg                                                                                 >  2:668791/1‑235 (MQ=255)
                                                                                                                                                                 gaagaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTTTTTTCTT‑CCA‑CCCCCATGAGAAAATAACTCCGCCCCCAGCGCCAGTGCCAAAGTTTTTTCAACATTCCCACGCTCGTTTACCGCCGGGCTGGGCAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTg                                                                      >  2:844209/1‑239 (MQ=255)
                                                                                                                                                                  aagaagCCGACGAGCTAAGAAAAAAATTATTTCGAAAACCGGCGGTTATATTTTTTTTTTAAC‑CGGGCGG‑TTAAA‑TTTTTTTTTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGcc                                                                                                                                                                                     <  1:1989580/127‑1 (MQ=255)
                                                                                                                                                                    gaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑ATGAA‑TTTTTGTCTT‑TCA‑CCCCCATGAGAAAATCACCCTGCCCACCGCGCCAGTGCCAACGTTTTTTTATCATCCGTACGCCCGTTTAACGCCGGGCTGGACAAAAAATGCTTTAAACAATCAGGTAATAAAACGAGTTGTTTCTTCGTTGCTTCCGCCAGGCCCTTGaaa                                                                   >  2:368247/1‑239 (MQ=255)
                                                                                                                                                                               gaaaaGAGAAAATTTATTTCGTTAATCAGCCTTTATTTTTTTTTTTAAAC‑CGGGGGG‑TTAAT‑TTTTTTTCTA‑AAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGc                                                                                                                                             <  1:1589569/151‑1 (MQ=255)
                                                                                                                                                                                     agCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTTAA‑ATTTTGTTTT‑CAA‑CCCCCCTGAGAAAATCACCCTGCCCACAGCCCCCCAGCCCACGGTTTATCATCATCCGGACGCCCGTTTTCCCCCCGGGGGGGCAAAAACTGCTTTAACAAAATAAGGAAAAAATCGAGTTGTTCCTGCGTTTCTGCCGCCCGTTCCATGAAAAACGGGGTaaagaaaag                                                  >  2:984511/1‑237 (MQ=255)
                                                                                                                                                                                         aaaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTTTTTTCTT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCCCAGCGCCCGTGCCCACGTTTTTTCATCATCCGTACGCTCGTTTACCGCCCGGCTGGACaaaaa                                                                                                                                   >  2:1589569/1‑154 (MQ=255)
                                                                                                                                                                                         aaaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑ATTTTTTTTT‑CAA‑CCGCCCTGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCCCCTTTACCCCCCGGCTGGACAAAAAATGCCTTTACAATTTAGGTAATAAATTGAGTTGTTCCTGCGTTGCTGCCGCCCGGCCATTTAAAAAAGGGGGAAAAAAAAGcaca                                              >  2:236770/1‑239 (MQ=255)
                                                                                                                                                                                          aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTGTTTTCTT‑CCA‑CCCCCCTGAGAAACTCACTCTGCCCACAGCGCCAGGGCCAACCCTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCCGGACAAAAACTGCTTTTACCATTCAGGTAATAAATCCAGTTTTTCCTGCGTTTCTGCCGCCCGACCATTGAAAAACGGGGGTAAAAAAGGCACAt                                             >  2:67780/1‑239 (MQ=255)
                                                                                                                                                                                                      cgtgttgttttATTTTTTTTTTTTAAT‑GTGGGGT‑TTAAT‑TTTTTTTCTT‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTAt                                 <  1:712247/230‑1 (MQ=255)
                                                                                                                                                                                                           gcttttATATTT‑TTTTTTAAA‑CCGGGGG‑TTTAATTTTTTGTCTA‑AAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACTTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGc                            <  1:668791/235‑1 (MQ=255)
                                                                                                                                                                                                            cttttATTTTTTTTGTTTAAG‑TTGGCGT‑TTGAT‑TTGTTGTCTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCa                           <  1:1476080/236‑1 (MQ=255)
                                                                                                                                                                                                                ttttttttttttttAAA‑CTGGGGG‑TTTAA‑TTTTTTTTTTCCAC‑CCGCCATGAGAACCTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCatat                        <  1:67780/235‑1 (MQ=255)
                                                                                                                                                                                                                  ttttttttGTTTAAC‑CGGGGGT‑TTAAT‑TTTTTGTCTC‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTa                                                                                                                                                                <  2:1163411/98‑1 (MQ=255)
                                                                                                                                                                                                                   attttttGTTTAAC‑CGGGGGG‑TGTAT‑TTTTTTTCTT‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTaa                    <  1:1570536/239‑1 (MQ=255)
                                                                                                                                                                                                                        ttttttAAA‑CTGGGGGTTTGAT‑TTTTTTTCTC‑CAC‑CCGCCATGAGAAACTCCCTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGcc                <  1:984511/236‑1 (MQ=255)
                                                                                                                                                                                                                         tGTTAAAC‑CGGGGGG‑TTGAT‑TTTTTTTCTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt                                                                                                                                                                               <  1:23218/78‑1 (MQ=255)
                                                                                                                                                                                                                           tttAAC‑CGGGGGG‑TTGAT‑TTTTTGTCTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCa                                                                                                                                                                                    <  1:621823/71‑1 (MQ=255)
                                                                                                                                                                                                                           tttAAAGCTGGCGT‑TTAAT‑TTGTTTTCTC‑AAA‑CCGCCATGAGAAACTCCCTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGt             <  1:1931037/239‑1 (MQ=255)
                                                                                                                                                                                                                            ttAAA‑CTGGCGG‑TTGAA‑TTGTTTTCTT‑CAA‑CCGCCCTGAGAAACTCACTCTTCCCCCAGCGCCCGTGCCCACGTTTTATTATCATCCGTACGCTCGTTTACCCCCGGGCTGGGCAAAAAATGCTTTAACAATTCAGGTAATAAATCGAGTTGTTTCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGGAAAGAAAAGCACATGAGGAGAATTATCCAGCATATTTAACg                  >  2:1570536/1‑232 (MQ=255)
                                                                                                                                                                                                                            ttAAA‑CTGGCGG‑TTGAA‑TTGTTGTTTT‑CCA‑CCCCCATGAGAAAATTACCCTTCCCACCGCGGCAGTGGTCAAGTTTTATCATCATCCGTACGCTCGTTTTCCGCCGGGCTGGTCCAAAAATTCTTTAACAATTTCGGTAATAAATCGAGTTTTTCCTGCGTTGTTGCCGCCAGTTCATTCAAAAAAGGGGGAAAGAAAAGCACATGCGGAGAAATATCCAGCACATTTaaagtcaagcg           >  2:699109/1‑230 (MQ=255)
                                                                                                                                                                                                                            ttAAA‑CTGGCGG‑TTGAA‑TTGTTGTCTT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCCCGTTTa                                                                                                                                                      >  1:1163411/1‑100 (MQ=255)
                                                                                                                                                                                                                             tAAA‑CTGGCGG‑TTGAA‑TTGTTGTCTT‑CAA‑CCCCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTTAAAATTCCggg                                                                                                                >  1:1413214/1‑136 (MQ=255)
                                                                                                                                                                                                                                      tgg‑TTAAT‑TTTTTTTCTA‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATAc   <  1:2284736/237‑1 (MQ=255)
                                                                                                                                                                                                                                        g‑TTTAA‑TTTTTTTCTTACAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATAcc  <  1:1335249/238‑1 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                      
TATTGGCGTAATCAGCAATGACCCTGGTATTGTTACAAACGTAGAATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTAC‑GGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAA‑CTGGCGG‑TTGAA‑TTGTTGTCTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACC  >  NC_000913/2151448‑2151914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑