| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,745,397 | 0 | A | C | 31.2% | 183.1 / 14.3 | 93 | L198F (TTA→TTC) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| Reads supporting (aligned to +/- strand): ref base A (42/22); new base C (0/29); total (42/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.76e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCCGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAAC > NC_000913/3745172‑3745624 | gCCGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGGCTTTCCCCCGGGATTATGTTGGGGGGAACGCTGTTTGTTTTCTCGGGGGGGCAGGCCCGGCGCCTTTATTTTACcccccccccaa > 2:488448/1‑234 (MQ=255) ccGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTGCCCTGGCATGATGATTGGGGCAACGCTGATGCTTTCCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCCCCCGCacaa > 1:300363/1‑239 (MQ=255) aCTATCGGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGGGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATc < 1:626272/239‑1 (MQ=255) ttgccGGTACACCGGGGGGCGGGGTTGTTTCCCTATGGCGGAATTATCGCGCCAATTATCCCCCCTTCCATTCCTTTTATTATCTTCGGCGTTTCCGGCGGATTACCCATCAGTAAGCTGTTTATGGGGGGCATTGCCCTTGGCATGATGATGGGCGCAACGCTGATGCTTACCGGGTGGTGGCGGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTg < 2:297498/236‑1 (MQ=255) tCCGGTCACCCGGGCGGGGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCTTTTCCAGCGGATTATCCATCAGTAAGCTGTTTAGGGCGGGCATTGCCCCTGGCATGATGAGGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGc < 1:488448/239‑1 (MQ=255) ccGGTCAACGGGGGGGCGGGTCTGTTTGCCTCTGGCGTCATTATCGCGCCATTTATCCCCCCTTCCTTTCCGTTTATTATCTTCGGCGTTCCCAGCGGATTATCCATCAGTAAGCTTTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCT‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCa < 2:807597/239‑1 (MQ=255) cggcggGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCTTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGtctc < 1:419596/238‑1 (MQ=255) ggCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGGGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGc < 1:177944/199‑1 (MQ=255) ttggcttccgccggcATTATCGCGCCAATGATTCCCCCTCCCATTCCTTTTATTTTCTTCGGCGTTTCCGGCGTTTTATCCATCGGGAAGCTGTTTAGGGCGGGCATTGCCCCTGGCAGGTAGATGGGCGCAACGCTGAGGCTTCCGTGGTGTGGGCAGGCCAGTCGCT‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTggg < 2:1802524/227‑1 (MQ=255) ctgtGGCGGCTTTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTTTTATCTTCGGCTTTTCCGGGGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGTTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGt < 2:194698/236‑1 (MQ=255) tCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCCGGGATGGTGGTTGGGGCAACGCTGATGCTTAACTGGGGGGGGCCGGGCCGTCGCC‑TTTATTTATCCCGCCAGCCAAAAACAACGACGCCGGAAATCTTGCCCTCTTTTTTCTCCCGTATCTTGgc > 2:855712/1‑200 (MQ=255) ttCCTTTTATTATCTTCGGCTTTTCCAGCGGATTATCCATCATTAGGCTGTTTATGGCGGCCATTGCCCCTGGCATGATGATGGGCGCACCGCTGATGCTTCCCTGGGGGTGGCGGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGc < 2:1130498/239‑1 (MQ=255) ttCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCa < 1:1223222/172‑1 (MQ=255) tttATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCTGGCATGATGATGGGGGCAACGCTGATGCTTATCTGGTGGGGGCGGGCCAGTCGCC‑TTTATTTAACCCCCCCGCAAAAAACAACGATGCAGGAAATCTGGCACTCTTTTTTTTCCCGTATCTgggg > 2:506753/1‑190 (MQ=255) tttATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGACCCCGGCATGATGATGGGCGCAACGCTGGTGCTTCCCTGGTGGGGGCCGGCCAGTCGCC‑CTACTTTACCCCCCCCGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATTTGGgc > 2:2247204/1‑191 (MQ=255) tatCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCCGGCCTGGTGATGGGGGCAACGCTTATGCTTACCTGGGGGGGGGAGGCCAGTCGCC‑CTTATTTATCCCCCCACCAAAAAACAACGATGCAGGAAATCTGGCACTCTTTTGtc > 2:1223222/1‑172 (MQ=255) tCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCCGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCC‑TTTATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTTTCTCCCGTATCTgggg > 2:713849/1‑172 (MQ=255) ggATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGAAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCT‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCgggg < 1:713849/235‑1 (MQ=255) tttATCCATGAGTAAGCTGTTTTGGGCGGGCATTGCCCCTGGCATGATGAGGGGAGCAGAGCTGATGCTTCCTTGGTGGTGGCAGGCCGTTGGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGtt < 2:2060450/237‑1 (MQ=255) aTTATCCATCAGTAAGCTGTTTATGGGGGGCATTGCCCCGGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCAc < 1:1541833/142‑1 (MQ=255) tATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTtgc < 1:1513673/238‑1 (MQ=255) tCCATCAGTAAGCTGTTTAGGGGGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTtgctgc < 1:384093/239‑1 (MQ=255) tCCATCAGTAAGCTGTTTAGGGGGGGCATGGCCCCTGGCATGATGAGGGGCGAAACGCGGATGCTTACCGGGTGGGGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGc < 1:708826/116‑1 (MQ=255) cAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTg < 1:1549949/140‑1 (MQ=255) cAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTAc < 1:1684208/95‑1 (MQ=255) aGTAAGCTGTTTATGGCGGGCACTGCCCCGGGGAAGATGATGGGCGGAACGGCGATGGTTACCTTGGGGTGGCAAGCCTGGCGCC‑GTAATTTACCCCGCCCGGCAAAAAAAACGATTCAGGGGAAATGGCACTCTTTTTTCTCCCGGATCTTGGAGGTGTTTCTTTCACTCATTATTATTGGCGGGGTTTGGCCCCGGCCTACTTATCCCTACCACAGCGGAGGCGGGTGATGCttttt > 2:1328262/1‑237 (MQ=255) tAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTttcttc < 1:1307761/164‑1 (MQ=255) aGCTGTTTATGGCGGGCATTTCCCCCGGCATGATGATGGGCGCAACGCTGATTCTTTCCTGGTGGTGGCAGGCCAGTCGCC‑TTATTTTACCCCCCCAGCAAAAAGCAACGATGCAg > 2:708826/1‑116 (MQ=255) aTGGCGGGCATTGCCCTTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGt < 1:1109548/239‑1 (MQ=255) cGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCT‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGc < 1:1346670/238‑1 (MQ=255) cGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGc < 1:506753/238‑1 (MQ=255) ggCTTTGCCCTGGGAATGATGGTGGGCGCACCCTTGACGTTTCCCTGGTGGGGGCAGGCCATTCGCT‑TTATTTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:1242555/238‑1 (MQ=255) ggCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGGGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:1003995/238‑1 (MQ=255) ggCATTGCCCCGGGAATGATGATGGCCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:1906410/238‑1 (MQ=255) tgatgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGc < 1:2118336/149‑1 (MQ=255) gatgatgGGCGCACCGCTGATGCTTCCCTGGTGGGGGCAGGCCAGTCCCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGaaa < 1:278450/239‑1 (MQ=255) gatgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgcg < 1:1142820/121‑1 (MQ=255) gatgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgcg > 2:1142820/1‑121 (MQ=255) atgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGc < 1:95315/147‑1 (MQ=255) aagatgGGCGCAACGCGGATGCTTACCTGGGGGTGGCAGGCCAGTCGCC‑TAAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGc < 1:2254816/160‑1 (MQ=255) gggCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1816121/1‑114 (MQ=255) ggCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgcg > 2:1928880/1‑114 (MQ=255) ggCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgcg < 1:1928880/114‑1 (MQ=255) cgcAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:2118336/1‑111 (MQ=255) cgcAACGCTGATGCTTACCGGGGGGTGGCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTttcttc < 2:1250814/122‑1 (MQ=255) cAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:95315/1‑109 (MQ=255) cAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1376246/1‑109 (MQ=255) aaCGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1769411/1‑108 (MQ=255) cGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:5554/1‑106 (MQ=255) tcTGATGCTTACCGGGTGGTGCCAGCCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATAATTATTGGC‑GGGTTTCGCTCCGGc < 2:1845092/147‑1 (MQ=255) taaTGCTTACCTGGTGGTGGAAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAAGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 1:1377236/236‑1 (MQ=255) gATGCTTCCCTGGTGGTGACAGCCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACttt < 1:920269/239‑1 (MQ=255) aTGCTTCCCTGGGGGTGGCAGGCCAGTCGCC‑TTATTTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGAc < 2:1420803/224‑1 (MQ=255) aTGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1250814/1‑101 (MQ=255) tGCTTCCCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTg < 1:308529/238‑1 (MQ=255) tGCTTACCTGGGGGGGGCGGCCCTGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGc < 2:1411426/199‑1 (MQ=255) gcttacggtgtgggggCAGGCCGCTCGCC‑TTATTTTCCCCCACCAGCAAAAAGCAACGATGCAGGAAATCTTGCACTCTTTTGTCTCCGGTTTCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 2:2387295/225‑1 (MQ=255) gCTTACCTGTTGGTGCCAGGCCAGCCGCT‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCAc < 2:251930/76‑1 (MQ=255) gCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGc < 1:1816121/239‑1 (MQ=255) gCTTACCGGGTGGTGGCAGGCCAGCCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGcc < 1:1355576/229‑1 (MQ=255) ttACCTGGTGGGGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCAt < 1:1418836/239‑1 (MQ=255) tACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:454558/1‑96 (MQ=255) aCCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1845092/1‑95 (MQ=255) ttggtggtgcCAGGCCGGTCGCC‑TAAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATgcg < 2:1538889/180‑1 (MQ=255) ggtggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTgg > 1:84627/1‑89 (MQ=255) ggtggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1420803/1‑91 (MQ=255) gtggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCa < 1:714550/66‑1 (MQ=255) gtggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCa > 2:714550/1‑66 (MQ=255) gtggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1411426/1‑90 (MQ=255) tggtggCAGGCCAGTCGCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAgg < 2:1126748/55‑1 (MQ=255) tggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAgg > 1:1126748/1‑55 (MQ=255) tggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGtct > 1:251930/1‑76 (MQ=255) tggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:2387295/1‑89 (MQ=255) tggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1355576/1‑89 (MQ=255) tggtggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:768387/1‑89 (MQ=255) ggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1332400/1‑85 (MQ=255) ggCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:95903/1‑85 (MQ=255) gCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGa > 1:255579/1‑51 (MQ=255) gCAGGCCAGTCCCC‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 1:2159115/219‑1 (MQ=255) cAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1538889/1‑83 (MQ=255) cAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:891085/1‑83 (MQ=255) gCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:2253216/1‑80 (MQ=255) ccAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1093857/1‑79 (MQ=255) ccAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:2225052/1‑79 (MQ=255) tCGCT‑TTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGc < 1:692304/50‑1 (MQ=255) tCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGc > 2:692304/1‑50 (MQ=255) cGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:2159115/1‑74 (MQ=255) cGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAac < 1:2278250/239‑1 (MQ=255) c‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGtt < 1:1798104/104‑1 (MQ=255) ttAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1965244/1‑70 (MQ=255) ttAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:943793/1‑70 (MQ=255) tAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1325151/1‑69 (MQ=255) ttttCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGc < 1:157679/109‑1 (MQ=255) | GCCGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCC‑TTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGC‑GGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAAC > NC_000913/3745172‑3745624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |