| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 417,533 | 0 | T | G | 45.6% | 40.9 / 21.0 | 57 | V131G (GTG→GGG) | phoB | response regulator in two‑component regulatory system with PhoR |
| Reads supporting (aligned to +/- strand): ref base T (22/9); new base G (26/0); total (48/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.59e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACAGAATTTAAACTGCTGCACTTTTTTATGACGCA‑TCCTGAGCGCGTGTACAGCCGCGAGC‑AGCTG‑TTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCCGGCGGG > NC_000913/417303‑417771 | gATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTg‑aga > 1:1990985/1‑239 (MQ=255)gATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGGTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGGGGTGATTt‑aga > 2:1459658/1‑239 (MQ=255) tGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGAGGGGATTG‑AGAt > 1:1848693/1‑238 (MQ=255) ccTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCCgg > 1:718175/1‑238 (MQ=255) ggcggcTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGAtt > 1:341119/1‑239 (MQ=255) ggcggcTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGCGGAAGAGGGGATTG‑AGATGCAGGGAtt > 1:2303119/1‑239 (MQ=255) gcggcTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTG‑AGATGCAGGGGTTa > 1:1111815/1‑239 (MQ=255) cggcTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGGGTG‑AGATGCAGGGATTaa > 2:1275943/1‑239 (MQ=255) gcTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGGATTTCGCCAATGGCGGGGGGAGGGGGGAATG‑AGAAGCAGGGATTaaag > 2:654093/1‑237 (MQ=255) tCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGGATCAGGGATTAAggc > 1:1870734/1‑236 (MQ=255) ccGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGGGGGGGTTG‑AGATGCAGGGGTTAAGtctc > 1:929684/1‑239 (MQ=255) ttCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGGAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACAt > 2:1513032/1‑238 (MQ=255) caAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGGGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTTGGAGAGGGGATTG‑GGCTGCAGGGATTAAATCTCGAACCGGCATCTCAcc > 2:995928/1‑239 (MQ=255) acacCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAg > 1:1085851/1‑239 (MQ=255) acCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTaa > 1:984645/1‑213 (MQ=255) acCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTg > 1:2045490/1‑239 (MQ=255) cTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGTGATTG‑AGAGGCAGGGATTAAGCTTCGACCCGGCATCTCACCGAGTGAt > 2:1571325/1‑239 (MQ=255) cgAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATggcgggcg > 1:300226/1‑239 (MQ=255) aGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCCCACCGAGTGATggcgggggga > 1:1945454/1‑235 (MQ=255) aGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTaa > 1:2013661/1‑201 (MQ=255) aGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGaa > 1:1441555/1‑239 (MQ=255) aGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGGCTCGACCCGACATCTCACCGAGt > 1:1789563/1‑226 (MQ=255) gtggtgATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGGCGCCGGGGGT‑GGGGGCggc > 1:1295127/1‑237 (MQ=255) gtgATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGGGATGGCGGGGGAAGAGGCGCCGGGGGT‑GGGGCCggccg > 1:177557/1‑234 (MQ=255) aTGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCCGGGATTAAGTCTCAACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGACGCTgggg > 1:1323766/1‑220 (MQ=255) aTGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACAtctaa > 1:1068849/1‑189 (MQ=255) aTGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTACTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCAc > 1:1203270/1‑192 (MQ=255) aCCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGAc > 1:1328490/1‑174 (MQ=255) aagaagaagATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGGGGCCGGGGGA‑GGGGGCG‑CGAGGATATGAAATGCTGCGCtttttt > 2:946800/1‑239 (MQ=255) cgTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATTTCACCGAGTGATggc > 1:1365677/1‑171 (MQ=255) cgTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGAAAAGCCGCCGGTGAG‑GGGGCCC‑ACAGAAATTTAAATGCTGCACTTTTTTATGACGCA‑t > 1:129057/1‑235 (MQ=255) gTGCGCGGCCTTTAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACAGAATTTAAACTGCTGCACTTTTTTATGACGCA‑TCCTg < 2:724138/239‑1 (MQ=255) tGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGCCCCCGGGGAT‑gggg > 1:1415647/1‑194 (MQ=255) gcgcGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAAAGCCGCCGGGGAT‑GGGGGCG‑ACCGAAATTTAAATGCTGCACTTTTTTTTGACGCA‑TCCTGAgc > 1:1608022/1‑239 (MQ=255) ccTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGCCGCTGGGGAT‑GGGGCCG‑ACAGAATTTTAACTGCTGCACTTTTTTTTGACGCA‑TCCTGAGCGCgtgt > 1:572947/1‑239 (MQ=255) aGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGt > 1:724238/1‑101 (MQ=255) aGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAAAGCCGCTGga > 1:594002/1‑148 (MQ=255) aGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGGGATGGCGGGGGGAGAGCCCCGGGGGAA‑GGGGGCGCCCAAAATTTAAA‑AGCTGCACCTTTTTTTGACGCACCCCCGGGCG‑GGGTAAAACCCCGAGCAAGCTG‑TTAAAcaagcctcg > 2:1756273/1‑231 (MQ=255) aGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGa > 1:1320400/1‑106 (MQ=255) aGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGGAGAGGCGCCGGGGGTGGGGGCCG‑CCAAAATTTAAA‑TGCTGCACTTTTTTTTGAGGCC‑ACCCGAGGCCGGTGACAACCCCGCGC‑AGCCG‑TTTAACAACGTCTgg > 2:610475/1‑239 (MQ=255) tttGGCCGAAGGAGCTGGTGGCGGGAAACAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑GGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACAGAATTTAAACTGCTGCACTTTTTTATGACGCA‑TCCTGAGCGCGTGTACAGCCGCGAGC‑AGCTG‑TTAAACCACGTCTGGGGAACt < 2:893664/239‑1 (MQ=255) aGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGGTTAAGTCTCGACCCGACATCCCACCGAGGGATGGGGGGGGCAAAGACGCTGGGGAG‑GGGGGCG‑GCAGAAATTtaa > 2:297566/1‑155 (MQ=255) cgAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGGAATATCACCGAGTGATGGCGGGCGGAGGGCCGGCGGGGGA‑GGGGGCG‑GCAGAATTTTAAATGGTGGACTTTTTTTTGACGCA‑ACCTGCGCGGGGGGACAGACCGGAGC‑GGCGGTTTAAACCAC‑CCTGGGGGGATAACgtgga > 2:869297/1‑222 (MQ=255) cgAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGGAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGCAGAGGCGCCGGGGGG‑GGGGGCC‑CCAGAATTTTAACTACTGCACttttttttt > 2:132027/1‑156 (MQ=255) tCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGAGGGGATTg‑a > 2:1663544/1‑52 (MQ=255) aaaggtgTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGGGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGGGAT‑GGGGCCG‑ACAGAATTTAAACTGCTGCACTTTTTTATGACGCA‑TCCTGAGCGCGTGTACAGCCGCGAGC‑AGCTG‑TTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGa < 2:1452970/233‑1 (MQ=255) tAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCCGGGGAT‑GGGGGCG‑CAAGAAATTAAACTGCTGCACTTTTTTTTGACGCA‑ACCTGAGCGCGCGTACAGCCGCGAGC‑AGCCG‑TTtaa > 2:1832713/1‑187 (MQ=255) cgcCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGGAGAGCCGCTGGAGAT‑GGGGGCG‑ACAGAATTTAAACTGCTGCACTTTTTTATGACGCA‑TCCTGAGCGCGTGTACAGCCGCGGGC‑AGCTG‑TTaaa > 1:1774905/1‑182 (MQ=255) ggCGGTGGAAGAGGGGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGGCCCTGGGGAG‑GGGGGCG‑GCCGAAATTTAAATGCTGGCCTTTTTTTTTAAGCA‑TCCTGGGGGCGGGGGCAGCCCCGGGC‑AGCTG‑TTTAAcc > 2:1363081/1‑167 (MQ=255) cGGTGGAAGAGGTGATTG‑AGATg < 2:2013661/23‑1 (MQ=255) cGGTGGAAGAGGTGATTG‑AGATg < 2:984645/23‑1 (MQ=255) gTGGAAGAGGTGATTG‑AGATGCa < 2:724238/23‑1 (MQ=255) tgtggTGAGTG‑AGATGCGGGGATTAAGTCTCGGCCCGACATCTCCCCGAGTGATGTCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACAGAATTTAAACTGCTGCCCTTTTTTATGACGCA‑TCCTGAGCGCGTCTACAGCCGCGAGC‑AGCTG‑TTAAACCTCGTCTGGGGATCTAACGTATATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCcg < 2:1366976/236‑1 (MQ=255) agagGTGATTG‑AGATGCAGGGAt < 2:1320400/23‑1 (MQ=255) gagGTGATTG‑AGATGCAGGGAtt < 2:1328490/23‑1 (MQ=255) gTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACAGAATTTAAACTGCTGCACtttt > 1:1192335/1‑106 (MQ=255) gTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACAGAATTTAAACTGCTGCACTTTTTTATGACGCA‑TCCTGAGCGCGTGTACAGCCGCGAGC‑AGCTG‑TTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCCCAt > 1:2193872/1‑206 (MQ=255) tGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGTTGGAGAT‑GGGGGCG‑ACAGAATTTTAACTGCTGCACTTTTTTATGACGCA‑TCCTGAGCGCGTGTACAGCCGCGAGC‑AGCTG‑TTAAACCTCGTCTGGGGAACTAACGCGTTTGTGGAAGACCGCACAGTCGACGTTCACATTTGCGGCCTGCGTAAAATATCGGGGCCCGGCggg > 2:1879346/1‑239 (MQ=255) | GATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTG‑AGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACAGAATTTAAACTGCTGCACTTTTTTATGACGCA‑TCCTGAGCGCGTGTACAGCCGCGAGC‑AGCTG‑TTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCCGGCGGG > NC_000913/417303‑417771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |