Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,781,1400AG24.5% 281.2 / 30.8 157intergenic (+123/‑75)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (80/37);  new base G (1/37);  total (83/74)
Fisher's exact test for biased strand distribution p-value = 6.21e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 170 total aligned reads displayed.

CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAC  >  NC_000913/3781042‑3781235
                                                                                                   |                                                                                               
ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGgaga                                                                                                 >  1:552576/1‑99 (MQ=255)
 ctctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGagag                                                                                                >  2:2450313/1‑99 (MQ=255)
 ctctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGagag                                                                                                >  2:2580430/1‑99 (MQ=255)
 ctctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCACACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGagag                                                                                                >  1:2081275/1‑99 (MQ=255)
 ctctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGCATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGagag                                                                                                >  1:1434027/1‑99 (MQ=255)
  tctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAgg                                                                                               >  2:1811448/1‑99 (MQ=255)
  tctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAgg                                                                                               <  2:4983284/99‑1 (MQ=255)
   ctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAggg                                                                                              <  1:3616248/99‑1 (MQ=255)
    tcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGACACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGc                                                                                             >  2:5222384/1‑99 (MQ=255)
    tcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGc                                                                                             >  2:2210720/1‑99 (MQ=255)
     cccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGcc                                                                                            >  1:568617/1‑99 (MQ=255)
      ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGGGGGCCg                                                                                           <  2:4862160/99‑1 (MQ=255)
      ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCg                                                                                           <  1:266832/99‑1 (MQ=255)
      ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCg                                                                                           >  2:543360/1‑99 (MQ=255)
      ccTCAGGGAGAGGGGACCGTCCGGCGCTGTATGTACTCCCTCACTGTGAAACGACACCGCACTCTGTTTTTCTCCCTCGCCC‑CTCTGGGGAGAGCGCCg                                                                                           >  2:3643990/1‑99 (MQ=255)
       cTCAGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACACTTTTTTGCGCCCTCGCCC‑CGCCGGGGAGAGGGCCgg                                                                                          >  2:1990306/1‑99 (MQ=255)
       cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCgg                                                                                          >  1:1723634/1‑99 (MQ=255)
        tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGGGGGCCggg                                                                                         >  1:3023175/1‑99 (MQ=255)
        tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCggg                                                                                         <  1:2320566/99‑1 (MQ=255)
        tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCggg                                                                                         >  1:5190857/1‑99 (MQ=255)
        tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCggg                                                                                         <  1:383115/99‑1 (MQ=255)
          aGGGCGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTGTTTTTCTCCCTCGCCC‑CTACGGGGAGAGGGCCggggg                                                                                       <  2:1138952/99‑2 (MQ=39)
           gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTg                                                                                      >  1:3938232/1‑99 (MQ=255)
            ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGa                                                                                     <  1:3402509/99‑1 (MQ=255)
            ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGa                                                                                     >  1:1137690/1‑99 (MQ=255)
             tggagGGTACGGTTCCGGGCTGTAGGTTGTCCCGCACGCTGGAACGACACCGCACTCTTTTTTTCTGCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAg                                                                                    <  2:4693388/97‑1 (MQ=25)
             gggagGGGACCGGTCGGCGCTGTATGTGCTCCCTCACTCTGAGACGACACCGCACTCTTTCGTGCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAg                                                                                    <  2:4246046/97‑1 (MQ=38)
             gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAg                                                                                    <  2:4605376/99‑1 (MQ=255)
              agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAgg                                                                                   <  1:3674419/99‑1 (MQ=255)
              agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAgg                                                                                   <  2:1171102/99‑1 (MQ=255)
              agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAgg                                                                                   >  2:860884/1‑99 (MQ=255)
                agGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAgggg                                                                                 <  1:982190/99‑1 (MQ=255)
                 ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTTCTTCTTCT‑CACCGGAGAGAACACCAGGGTGAgggta                                                                                >  2:2029621/1‑97 (MQ=255)
                  gggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                               <  1:4478036/99‑1 (MQ=255)
                  gggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                               >  2:3441576/1‑99 (MQ=255)
                   ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTGTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGaaa                                                                              <  2:3126102/99‑1 (MQ=255)
                    gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa                                                                             >  1:1762667/1‑99 (MQ=255)
                     aCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                            >  1:3265814/1‑99 (MQ=255)
                       cGTTCGTCGCTGAATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCCCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAGAGGc                                                                          >  2:4557288/1‑99 (MQ=38)
                       cGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                          >  1:3898058/1‑99 (MQ=255)
                        gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc                                                                         >  1:4801087/1‑99 (MQ=255)
                         ttCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCg                                                                        >  1:3774326/1‑99 (MQ=255)
                            ggCGCTGTATGTCCTCCCCCACTCTGAAACGACCCCGCCCTTTTTTTTTCCCCCCCGCCC‑CCCGGGGGGGGGGGCGGGGGTGGGGGGAAAAGGCCGCAc                                                                     <  1:1014855/99‑1 (MQ=255)
                            ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCAc                                                                     >  1:883108/1‑99 (MQ=255)
                               gcTCTATTTACTCCCTCCCTCGGAACCGACACCGGCCTCTTTTTTCCCCCCCCGCCC‑CTCCGGGGGGGGGGCGGGGGGGAGGGAAAAAGGCCGCACTGc                                                                  <  2:4134406/99‑1 (MQ=255)
                                  gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCa                                                               >  2:271340/1‑99 (MQ=255)
                                     tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGCGAGGGCCGGGGTGAGGGGAAAAGCCCGCACTGCTCACCa                                                            >  2:2194339/1‑99 (MQ=255)
                                       taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAt                                                          >  1:4645930/1‑99 (MQ=255)
                                            ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTTTTTCTCCC‑CTCCGGGGCGACGGCCGGGGTGAGGGGGACAGGCGGCACTGCTCACCAATTTTCt                                                     >  2:3501798/1‑99 (MQ=255)
                                            ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttttat                                                     >  2:4381914/1‑97 (MQ=255)
                                            ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                     >  2:2335761/1‑99 (MQ=255)
                                             cgccctccGAAACGACACCGCCCTCTTTTTTTCCCCCTCGCCC‑CCCGGGGGAGGGGGCCGGGGGGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTg                                                    <  2:1350597/95‑1 (MQ=255)
                                             cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                    >  1:53473/1‑99 (MQ=255)
                                               ccctctGAACCGCCCCCGCCCTCTTTTTTTCCCCCCCCCCC‑CCCGGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                  <  1:1801439/97‑1 (MQ=255)
                                                  tctGAAACGGCCCCGCGCTCTTTTTTTC‑CCCGCGCCCTCCCCGGGGGGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                               <  2:5023188/99‑1 (MQ=255)
                                                  tctGAAACGACACCGCACTCTTTTTTTTTTTTTTTTTT‑CTCCGGGGAGAGGGCAGGGGTGAGGTGAAAAGGCCGCACTGCTAACCTATTTTCTGCtctc                                               >  2:4168093/1‑99 (MQ=255)
                                                  tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGACGGCCGGGGTGACGGCACACCGACCCACTGCTCACCCACCTTCTCCTATc                                               >  2:2479207/1‑99 (MQ=255)
                                                   ctGAAACGACCCCGCACGCTTTTTTTCTCCCTCGCCC‑CTCCGGGGTGAGGGCCGGGGGGAGGGAAAAAGGCCGCACTGCTCACCAGTTTTCTGCTATcc                                              <  2:5165132/99‑1 (MQ=255)
                                                     gAAACGAGACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                            >  2:5292929/1‑99 (MQ=255)
                                                     gAAACGACACCGCACTCTTTTTTTTTTTTTTTTTT‑CTCCGGGGAGAGGGCCTGGGTGCGGGGAAAAGGCCTCACTGCTCACTAATTTTCTGCTATCCTg                                            >  2:2824768/1‑99 (MQ=255)
                                                       aaCGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGAGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGGTATCCTGcc                                          >  1:4915776/1‑99 (MQ=255)
                                                         cGACCCCCCACTCTTTTTTCCCCCCTCCCCC‑CCCCGGGGAGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                        <  1:5279826/99‑1 (MQ=255)
                                                          gACACCGCACTCTTTTTTTTTTTTTTTTCC‑CTCCGGGGAGAGGGCCGGGGTGTGGGCCAAAGGCCGCACTCCTCACCAATTTTCTGCTATCCTGccccc                                       >  2:4733322/1‑99 (MQ=255)
                                                          gACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc                                       >  2:1534013/1‑99 (MQ=255)
                                                           cccccGCCCTCTTTTTTCCCCCCCCCCCC‑CCCCGGGGAGGGGCCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg                                      <  1:388353/96‑1 (MQ=255)
                                                           acacCGCACTCTTTTTTTTTTTTTTTTCC‑CTCCGGGGAGAGCCCCGGGGTGAGGTCAAAAGGCCGCACTGCTCACCAATTTTCTCCTATCCTGcccccc                                      >  2:3873695/1‑98 (MQ=255)
                                                             acCGCACTCTTTTTTTTTTTTTTTCCC‑CTCCGGGGAGCGGCCCGGGGTGACGGCAACAGGCCGCACTGCTCACCAACTCTCCCCTATCCTCCCCCCGcc                                    >  2:1558342/1‑98 (MQ=255)
                                                             acCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa                                    >  2:5472316/1‑99 (MQ=255)
                                                              ccGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                   >  1:5050946/1‑99 (MQ=255)
                                                                  cctttttttttCCCCCCCGCCC‑CCCGGGGAAGGGGGCGGGGGAGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                               <  1:2183386/95‑1 (MQ=255)
                                                                  cctctTTTTTTCTCCCCCCCCC‑CCCGGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                               <  2:1253009/98‑1 (MQ=255)
                                                                  cctctTTTTTCCCCCCTCCCCC‑CCCGGGGGCGGGGGCCGGGGTGAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                               <  2:2378522/98‑1 (MQ=255)
                                                                   ctctTTTTTTCCCCCCCCCCC‑CCCGGGGGAGGGGCCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                              <  1:4878098/99‑1 (MQ=255)
                                                                   ctctTTTTTCCCCCCCCCCCC‑CCCCGGGGAGGGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                              <  1:309115/99‑1 (MQ=255)
                                                                    tctTTTTTTCTCCCTCGCCG‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                             >  1:4391192/1‑99 (MQ=255)
                                                                    tctTTTTTTCTCCCGCGCCC‑GGCCGGGGGGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                             <  2:2590625/99‑1 (MQ=255)
                                                                    tctTTTTTCCCCCCCCCCCC‑CTCCGGGGGGGGGCCGGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                             <  1:5601041/99‑1 (MQ=255)
                                                                     ctTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                            >  2:2994583/1‑99 (MQ=255)
                                                                     ctTTTTTTCTCCCCCGCCC‑CGCGGGGGGGAGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCATGCCCCCGCACTAAgggg                            <  1:2429430/99‑1 (MQ=255)
                                                                        tttttCCCCCTCCCCC‑CCCCGGGGAGAGGGCGGGGGGGGGGGGAAAAGTCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                         <  2:4999546/99‑1 (MQ=255)
                                                                        ttttcCCCCCCCCCCC‑CCCCGGGGAGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                         <  1:4195179/99‑1 (MQ=255)
                                                                           ttCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                      >  2:2102202/1‑99 (MQ=255)
                                                                           ttCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                      >  1:3020373/1‑99 (MQ=255)
                                                                            cccccccCGCCC‑CCCGGGGGGGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                     <  1:5557014/96‑1 (MQ=255)
                                                                             ctcCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTagg                    >  2:739884/1‑97 (MQ=255)
                                                                             ccccccCGCCC‑CGCGGGGGGGGGGCCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg                    <  1:1039169/97‑1 (MQ=255)
                                                                              cccccCGCCC‑CTCCGGGGGGAGGGCCGGGGGGAGGGAAAAAGGCCGCGCTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                   <  1:2842981/98‑1 (MQ=255)
                                                                              ccccTCGCCC‑TCCTGGGGGGGGGGCGGGAGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTTTCCTGCCCCCGCACTAAGGGGGCAGTATGc                   <  2:2015737/98‑1 (MQ=255)
                                                                               cccTCGCCC‑CTCCGGGGAGAGGGCCGGGGTCAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                  >  1:4526906/1‑99 (MQ=255)
                                                                                ccTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                 >  1:784688/1‑99 (MQ=255)
                                                                                 cTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                >  1:3505814/1‑99 (MQ=255)
                                                                                 cTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                >  1:149222/1‑99 (MQ=255)
                                                                                  cccccc‑cTCGGGGGAGGGGCCCGGGGTGAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa               <  2:1112004/96‑1 (MQ=255)
                                                                                   ccccc‑cGCGGGGGGGGGGGCGGGGGGGAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc              <  1:4190295/97‑1 (MQ=255)
                                                                                    gCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACa             >  1:2340804/1‑99 (MQ=255)
                                                                                      cc‑cTCGGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc           <  2:3797425/99‑1 (MQ=255)
                                                                                       c‑cTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg          >  1:3399885/1‑99 (MQ=255)
                                                                                         cTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt         >  1:2557119/1‑99 (MQ=255)
                                                                                          tCCGGGGAGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa        <  2:4465747/99‑1 (MQ=255)
                                                                                            cGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt      >  2:1105586/1‑99 (MQ=255)
                                                                                                   |                                                                                               
CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCC‑CTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAC  >  NC_000913/3781042‑3781235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑