| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,930,718 | 0 | T | G | 36.8% | 126.2 / 12.2 | 58 | T126P (ACC→CCC) | ravA | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
| Reads supporting (aligned to +/- strand): ref base T (4/32); new base G (21/0); total (26/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.93e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CATCAGGAACCGGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCT > NC_000913/3930484‑3930950 | cATCAGGAACCGGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGGGG‑GCAAGGGATTa > 1:696747/1‑239 (MQ=255) gATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCCAAGGATTAAGAATTGcccg > 1:47813/1‑236 (MQ=255) aTTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGGGG‑GGAAGGGAGTAAGAAATTCCggg > 2:1284268/1‑238 (MQ=255) ttGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGc < 1:1377752/238‑1 (MQ=255) gTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGccc > 1:978515/1‑238 (MQ=255) gTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑g < 1:1406905/239‑1 (MQ=255) gTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑g < 1:1423708/239‑1 (MQ=255) gTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑g < 1:257102/239‑1 (MQ=255) tCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGAt < 1:1284268/239‑1 (MQ=255) aGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGAGGCAAGG‑ATTAAGAAATGCCGGGCCC‑CCTTTCCAGGTCTCATCCAGAAAGaa > 2:1065596/1‑238 (MQ=255) ggAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAAttt < 1:976061/239‑1 (MQ=255) aGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGG‑GCTAGGGGTTTAGAATTTCCGGGCGC‑GCTCTCTCGACATCTTCCCGAAAGAcc > 2:208045/1‑232 (MQ=255) aGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAAtt > 1:1136514/1‑236 (MQ=255) ggAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑Ct < 2:1136514/239‑1 (MQ=255) ttCGCTTTATCCTGCACTTTACCTAACCACAGACGAATCAGCAGGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCgg < 1:1065596/239‑1 (MQ=255) cGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GGAAGGGATTTAGAATTGCCCGGCCC‑GCCTTCCCGAATTCATCCCGAAAGACAATATCTG‑CTTCCTGCa > 2:49585/1‑239 (MQ=255) aTCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AAc < 2:400765/239‑1 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGG‑GCAAGGGATTAAGAATTTCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAAATTTTG‑CTTCCGGCCGGT‑AAACGCT‑GGTTaa > 2:168577/1‑238 (MQ=255) tATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AAc < 1:1003892/228‑1 (MQ=255) tCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCg < 1:907067/228‑1 (MQ=255) cacaGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGGGA‑GCAAGGGATTAAGAATTTCCCGGGCC‑GCTTTCCAGATCTCATCCCGAAAGACAATTTTTG‑CTTCCGTCAGGT‑AACCGCT‑GGGTTAACGTTCATa > 1:971750/1‑239 (MQ=255) caGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGGATTAAGAATTGCCGGGCCC‑GCCTTCCCGATCTCATCCAGAAAAAAAAATTCTT‑CTTTCGGCCGGT‑AAACCCC‑GGTTTAAAGATCCTAg > 2:1527928/1‑238 (MQ=255) gACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GGAAGGGATTAAGAATTGCCGGGCCC‑GCTTTCCCGATCTCATCCAGAAAGACAAATTCTG‑CTTCCGGCAGGG‑AAACGCT‑GGTTAAAc > 2:907067/1‑228 (MQ=255) cGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAgcg < 2:978515/236‑1 (MQ=255) tCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTa < 1:1326695/208‑1 (MQ=255) atatAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGAt < 1:1203201/159‑1 (MQ=255) atatAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCt < 1:49585/239‑1 (MQ=255) tataACGCTTCCAGACTGCTTTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTCTTTCTACGGGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGG‑GCAAGGGATTTAGGAATGCCCGGc > 2:179492/1‑145 (MQ=255) cTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGG‑GCACGGTATTAAGAAATTCCGGGCCC‑GCCTTTCAAATCTTATCCAAAAAGACAAATTTTG‑CTTTCGGCCGGTGAACCGTG‑GGTTAAACGTCCAAAAC‑CCCCTCATCTTTTTAGCGcccaattgaa > 2:272818/1‑231 (MQ=255) cTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCACGGGATTTAAAATTTCCGGGGCC‑GCTTTCTAGATACCATTCCGAAAGACAATTTCTG‑CTTCCGGCAGGG‑AACAGCC‑GGTTAAAAGTTCATTGCGCCCTTCTTC‑TTTTTACGCCAGaaaaaga > 2:1343756/1‑234 (MQ=255) ttCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCgg < 1:61859/135‑1 (MQ=255) tCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGG‑GCAAGGGATTTAGAATTGCCGGGCCC‑CCTTTCCCGATCTCATCCaaa > 2:1203201/1‑157 (MQ=255) ctgTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑g < 1:534454/130‑1 (MQ=255) ctgTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGGGG‑GCCAGGGATTAAGAATTGCCGGGCCC‑GCTTTc > 2:61859/1‑135 (MQ=255) ttCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAActtctg < 2:1171423/239‑2 (MQ=255) cgtcAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTTTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCg < 1:715034/236‑1 (MQ=255) aGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GGAACGGGATAAGAAATGCCGGGCCCGGCTTTCC‑GATCTTCCCCACAAATCCAAATTCTGTCTTCCGG‑AGGG‑AACCGCC‑GGGGAAACGGTGCTAGCGCCACTTATC‑TTTTAACGCCTGAACAGTAAAAGGACCAAacacatactcca > 2:715034/1‑227 (MQ=255) tCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTa < 1:664008/169‑1 (MQ=255) ccgccACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGGATTAAGAATTTCCGGGCCC‑GCTTTTCAGATCTCATCCAGAAAGACAAATTTTG‑CTTCCGGCAGGG‑AACCGCT‑GGTTAAACGTTCATa > 2:664008/1‑169 (MQ=255) agcagACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAgcg < 1:474947/164‑1 (MQ=255) aTCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAAcg < 1:168577/238‑1 (MQ=255) tCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GGAAGGGATTAAGAATTGCCGGGCCC‑GCCTTCCAGATCTCATCCAGAAAAACAATTTTTT‑GTTCCGGCCGGG‑AAACGCC‑GGGTAAACGTTCCTAGCGCCCTTCATC‑t > 2:474947/1‑164 (MQ=255) tttttCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGGATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCAt > 1:379208/1‑239 (MQ=255) gtgtGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGAt < 1:554795/78‑1 (MQ=255) gtgtGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGc < 1:1214804/228‑1 (MQ=255) tgtgCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAgcg < 1:1589477/137‑1 (MQ=255) ttGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGGATTAAGAATTTCCGGGCCC‑GCCTTTCCGATCTCATCCAGa > 2:554795/1‑78 (MQ=255) tGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCt < 1:1452306/131‑1 (MQ=255) tGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGGATTTAAAATTGCCGGGGCC‑GCCTTCCAGATCTCATCCCGAAAGACAATTTTTG‑CTTCCGGCAGGT‑AACCGCT‑GGGTAAAAGTTCATAGCGCCCCTCATC‑t > 2:1589477/1‑137 (MQ=255) gcgcTCGTTAATGGCGGTGA‑GCGAAGGATTAAGAATTTCCGGGGCC‑CCTTTTCAGATCTCCTCCCGAAAGAAAAATTCTG‑CTTCCGGCCGGG‑GACCGCTGGGTTAAAAG‑TCAAAGCGCCCCTCCTA‑ttttt > 2:1452306/1‑130 (MQ=255) tCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCa < 2:88438/238‑1 (MQ=255) gTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AAc < 1:68781/89‑1 (MQ=255) gTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAAttt < 1:442269/219‑1 (MQ=255) gTGA‑GCAAGGGATTTAGAATTGCCGGGCCC‑CCCTTCCCGATCTCATCCAGAAAGACAATTTTTT‑CTTCCGGCAGGG‑AACCGCT‑GGTTaa > 2:68781/1‑89 (MQ=255) gA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATa < 1:272818/238‑1 (MQ=255) aaGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCt < 1:363896/237‑1 (MQ=255) ggTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCg < 2:512922/73‑1 (MQ=255) ggTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCg > 1:512922/1‑73 (MQ=255) | CATCAGGAACCGGATTGTCGTTTTCATCCTGTTGACTGGTCAGCATGGAGCGGAAATTCGCTTTATCCTGCACTTTATCTAACCACAGACGAATCAGCATGCGGTCATATAACGCTTCCAGACTGCTGTCTGCTTCCGGCAGCTCGTTGGAGGCCGCCACCAGCAGACGCATCGGGATTTTTTCTACGTGTGCACCGTTGCGGAACTGGCGCTCGTTAATGGCGGTGA‑GCAAGGTATTAAGAATTGCCGGGCCC‑GCTTTCCAGATCTCATCCAGAAAGACAATTTCTG‑CTTCCGGCAGGT‑AACCGCT‑GGTTAAACGTTCATAGCGCCCTTCATC‑TTTTAGCGCCTGAATAGAAAGGGGACCAAAAACTTCTTCCGGCGTGGAGAAGCGGGTCATCAGATATTCAAACGCGCGGGCATTCTGAAAGGCGAATTTTAAGCGCCGGGCGATCAAACTTTTGGCAATACCT > NC_000913/3930484‑3930950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |