| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,615,733 | 0 | T | A | 32.1% | 121.5 / 19.7 | 56 | Y50F (TAT→TTT) | yfgO | putative UPF0118 family inner membrane permease |
| Reads supporting (aligned to +/- strand): ref base T (10/28); new base A (17/1); total (27/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.34e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCCGCGTCCATTAACGCCGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTC > NC_000913/2615499‑2615953 | cccGCGTCCATTAACGCCGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGGGGAG‑CCCAAAAAATTCAG‑AACCCCCGTTGGCCATTCCCCCAAAAAgg > 2:505206/1‑238 (MQ=255) ccGCGTCCATTAACGCCGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATCCAATCGCCGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGc < 1:780222/238‑1 (MQ=255) ccGCGTCCATTAACGCCGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGc < 2:593674/238‑1 (MQ=255) ccGCGTCCATTAACGCCGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGc < 1:301041/238‑1 (MQ=255) cgTCCATTAACGCCGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGGGCAG‑CCAAAAGAATGTAG‑ACGCCCGGGTGGGCCTTCCAGAAAAAAAGCCCGc > 1:936057/1‑239 (MQ=255) aTTAACGCCGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCACAAGATTTCAG‑ACCCACGGGTGGCCCTTCCAGCAAAAAAGCCAGCGCaaa > 1:583985/1‑238 (MQ=255) gCCGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGTGCAGCCCAACAG‑TTGTAG‑ACGCAACAGTGGCCCCTTCAGCCAAAAAGCCCGCACAACAAcca > 2:988418/1‑238 (MQ=255) cGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑GCAAAAAAATGCAG‑AAGCACGGTTGGCCAATCCAGCAAAAAAGCCCGAGAAATAAccacca > 1:597967/1‑239 (MQ=255) ggcgcggcAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCa < 1:712208/234‑1 (MQ=255) ggcgcagcAAGGTGGCGGCCAAGTAAGTAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATAGGTAGCAATATACCGACGAAAACCACCAATACAATCGGCGTCGCCCAGCGACGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCa < 2:1343419/234‑1 (MQ=255) cgcggcAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCCATAGAATGCAGAACCCCCGGTT‑GCCATTCCCGCAAAAAAGCCACCACAAAAACCAACAGCAACAGagc > 2:1599565/1‑239 (MQ=255) gggaaaGTCAGAAAACTTATTGAGCATCCCCGGCATAGCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTGGCAATTTACCGACCAAAAACACCCATACAATCGGCGTCGCCCAGCGGCGGGAGCAA‑CCAAAAGGTTGCAG‑ACGCACGGTTGGCCATTCCAGCAAAAAAGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTa < 2:936057/235‑1 (MQ=255) tATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGAATGTAG‑CCGCACCGGTAGCCACACCAGCCAAAAGGCCAGCACAAAAACCACCAGAAAAGGAGCAAACCGGCCACTAAAAAAAAAAATAAAGCCa > 2:37069/1‑239 (MQ=255) aTCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGGGCAG‑CCAAAAAATTGCAG‑ACGCCCCGTTGGCCCTTCCCGCAAAAAGGCCAACACAAAATCCAACACCAAACGGGCAAAAAGGCCCCCAAAAAAAAAAAAaaaaccaaaaccccc > 2:1357040/1‑236 (MQ=255) aTCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCa > 1:83511/1‑175 (MQ=255) aTCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCa < 2:83511/175‑1 (MQ=255) aTCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAAATTTCAG‑ACGCACGGGTGGCCAATCCAGCAAAAAAGCCAACACAAAAACCACCAGCAACGGAGCAAACAGGCCACTAAAGAAAAAAAGAATACAAAATCCGGc > 2:1220174/1‑239 (MQ=255) cATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGc < 1:1270651/165‑1 (MQ=255) atatCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACaa > 1:13489/1‑172 (MQ=255) atatCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACaa < 2:13489/172‑1 (MQ=255) tatCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATa < 1:376224/239‑1 (MQ=255) aTTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGGGCAG‑CCAATAAATTGCAG‑ACGCACGGTTGGCCCTTCCCGCAAAAAGGCCAGCACAATAGCCACCAGCAACAGAGCAAACAGGCCACCAAAGAAAAAAAAAATAACAAAAACGGCAAATACAaaaaaaaacaa > 2:724986/1‑232 (MQ=255) aTTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCg < 1:195826/219‑1 (MQ=255) aGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCaa < 1:1357040/237‑1 (MQ=255) tGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAAt < 1:315341/235‑1 (MQ=255) tGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAA‑ACGCACGGTTGGCCATTCCAGCAAATAAGCCAGCACAAAAGCCACCAGCAAAGGAGCAAGCAGGCCCCCAAAGAAAAAAAAAAAGCCCAAACCGGCAACTaaaa > 2:195826/1‑219 (MQ=255) ccAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAAAAGATTGCAG‑ACGCCCGGTTGGCCATTCCAGCAAAAAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAAAAAAAAAAAATGCCCAAACCGGCAACTAAAAAAACCAGCAAGGCAAAAGCTTCCggg > 2:315341/1‑235 (MQ=255) ctAGGCAGTACCCCGACCCCCATCAGTAGCAATGTACCGACGAAACCCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCCTTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTAG‑CTAAAAc < 2:597967/237‑1 (MQ=255) cGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCAt < 1:325594/239‑1 (MQ=255) gCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGagc < 1:1612695/137‑1 (MQ=255) aGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGc < 1:1349919/104‑1 (MQ=255) gCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAAATTGCAG‑ACGCACGGTTGGGCATTCCAGCAAAAAGGCCAGCACAATAGCCCCCAGCAAAGGAGCAAGCAGGCCa > 2:1612695/1‑137 (MQ=255) cAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGca < 1:835506/104‑1 (MQ=255) aaTATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCg < 1:1286755/237‑1 (MQ=255) aaTATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCg < 1:724986/237‑1 (MQ=255) taCCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGGGCAG‑CCAAAAAATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAAAAGGCCAGCACaaaa > 2:1349919/1‑102 (MQ=255) acgaAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGCGCAG‑CCAAAAGAATGCAG‑ACGCACGGGTGGGCATTCCAGCAAAAAGGCCCGCACCAAAGccac > 2:835506/1‑104 (MQ=255) caccaATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCa < 1:773842/101‑1 (MQ=255) caccaATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTg < 1:37069/239‑1 (MQ=255) caATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCgg < 1:393030/177‑1 (MQ=255) tACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTGAACCTc < 1:167708/239‑1 (MQ=255) aTCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAAATTGGCG‑ACGCACCGTTGGCCATTCCAGCAAAAAGGCCAGCACAAAAACCACCAGCAACGGagcaag > 2:773842/1‑101 (MQ=255) tCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTGAACCTCAagag < 1:40621/239‑1 (MQ=255) gACGTCGCCCAGCGGCGGGGGGCG‑CCAAAAGAATGGAG‑ACGCCCGGGTGGCCACTCCAGCAAAAAGGCCAGCACAATAGCCAACAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAAATAATGCCAAATCCGGCAACTAAAAAAACCAGCAAAGCAATAGCTTCCGGGGCG‑CTaaaa > 2:393030/1‑177 (MQ=255) gTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTGAACCTCAAGAGCGGGa < 1:1010697/239‑1 (MQ=255) ggAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAAAAAGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCCAATCCGGCAACTAAAATAAACAGCAAAGCAAACGCCTCCCGGGCGCCAAAAACGCGGGGGAAACCATT‑CATCCAAAATTTCGAGAAAAAAAACCTCCCCCAAACCCCACAACGGGGATTGCGATCCCCaa > 2:852312/1‑239 (MQ=255) tGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGa < 1:1042027/153‑1 (MQ=255) tGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGa > 2:1042027/1‑153 (MQ=255) tGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTcac > 2:16226/1‑239 (MQ=255) gCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAAc < 2:455642/167‑1 (MQ=255) gCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAAc > 1:455642/1‑167 (MQ=255) aCGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCAc > 1:40534/1‑68 (MQ=255) aCGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCAc < 2:40534/68‑1 (MQ=255) aCGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACaaaaa > 2:1558161/1‑239 (MQ=255) aCGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAg > 2:852285/1‑237 (MQ=255) gTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTc > 1:1345421/1‑239 (MQ=255) | CCCGCGTCCATTAACGCCGGATAGCGGCGCGGCAACGTGGCGGCAAAGTCAGAAAGCTTATTGAGCATCCCCGGCATATCGCGGATTAAGTAGATGCCCTGTTGCCAGGCGATAGGCAGTACCACGAACGCCATCAGTAGCAATATACCGACGAAAACCACCAATACAATCGACGTCGCCCAGCGGCGGGAGCAG‑CCAATAGATTGCAG‑ACGCACGGTTGGCCATTCCAGCAAATAGGCCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCG‑CTAAAACGGCGGCGATACCATTGCAT‑CAACATTTCGAGCATAAAGACCTTCCCTGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTC > NC_000913/2615499‑2615953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |