| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 375,247 | A→G | 8.9% | intergenic (+366/‑212) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 375,247 | 0 | A | G | 8.9% | 268.7 / 12.0 | 90 | intergenic (+366/‑212) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| Reads supporting (aligned to +/- strand): ref base A (47/35); new base G (4/4); total (51/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.23e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.74e-01 | |||||||||||
GCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTCATCTTATGTCGACTCGTA > NC_000913/375021‑375471 | gcgctggACTGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTAAGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTa < 1:398835/221‑1 (MQ=255) gCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTa > 1:1907215/1‑228 (MQ=255) ccTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGCGCACGACTGGCGGATGCGGCGTAAACGCCCTATCCGGCCTACGGATGGCG‑CGGGGATTTGTa > 2:1804107/1‑227 (MQ=255) tACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGc < 1:1978624/228‑1 (MQ=255) cGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCACATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGGGTAAAGGCCTTTTCCGGCCTACGGATGGCG‑CAGGGATTTGTAGGCCt > 2:907153/1‑228 (MQ=255) ggcctgggAATTTGGAGGCCTGATAAGGCGCGGTGGCGGCGCATCAGGCATCGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATaa < 1:553988/223‑1 (MQ=14) ggCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGGGCATTTTGAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCCTGACCGCCGGCTGCGGCGTAAACGCTCTATCCGGCACACGGACGCCGCCGGCAATTCGTAGG‑CTGATac > 2:1210936/1‑227 (MQ=11) cgcgGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTa < 2:1797787/177‑1 (MQ=39) gcgGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCC‑CCGGAATTTGTAGGCCTGATAAGaa > 2:750297/1‑227 (MQ=255) tGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGGAAACGCCTTATCCGGCCTACGGATGGCG‑CCGGAATCTGTAAGCCCGATAAGACCCGTTAGCg > 2:1491568/1‑228 (MQ=255) aTAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACCCGTTACCGTCGCATCAgg > 1:1797394/1‑228 (MQ=37) aTAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGACAAGACGCGTTAGCGGCGCATCaag > 2:1763696/1‑226 (MQ=255) aCGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCt > 1:1083691/1‑196 (MQ=38) cgcgTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTg < 2:1081753/196‑1 (MQ=39) cgcgTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCCGATAAGACGCGTTAGGCTCGCAACAAGCaattg > 2:903975/1‑224 (MQ=255) ttAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGTGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGGATTTGTAGGCCTGATCAGCCCCGTTATCGTCGCCTCCGTCTTCT‑Gcgtc > 2:855132/1‑225 (MQ=11) gCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGGTCAGACGCGTTAGCGTCGCATCCGGCATTG‑GCCCACCACTGcc > 2:1106744/1‑228 (MQ=255) cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGGTAAGACCCGTTAGCGTGGCATCAGGCATCT‑GGACCCGACTGcc > 2:1962537/1‑227 (MQ=255) cAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGa < 2:1903837/227‑1 (MQ=39) tGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGgcg > 2:407945/1‑154 (MQ=38) gcgcACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGgcg‑c < 1:408623/154‑1 (MQ=38) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑ACGGAAATTGTATGCCTGATAAGACGCGTTAGCGTCCGATCCGGCCTCT‑CCACACGACTGTCGGATGTGCGAAACggc > 2:1896412/1‑225 (MQ=11) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTTGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTTCGCACGACTGCCGGATGCGGCGGAAACGCCTTATTCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCCTCGCATCTGGCATCTGGCAC‑CGCCTTCCGGATGCGATACAAGCCTTGTctg > 2:1994877/1‑225 (MQ=11) tGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCAGCT‑GCACACGACTGCCGGATGCGTTAAACGGCGTGTCCGGGCTAc > 1:207332/1‑228 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAAttt > 2:323450/1‑143 (MQ=39) gcgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTg < 1:324005/143‑1 (MQ=39) cgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCCGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATACGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTc > 1:441445/1‑228 (MQ=255) cgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGgc > 1:1514290/1‑131 (MQ=21) cgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTg > 1:1313036/1‑142 (MQ=39) gTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGgcg < 2:1511580/131‑1 (MQ=21) gTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGt < 2:1310690/142‑1 (MQ=39) aaCGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCCGGCATCT‑GCACACGACTGCCGGTTGCGATAAACGTCTTGTCTGGCCTACATTTCga > 2:1651386/1‑225 (MQ=255) cTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGt > 1:1453001/1‑134 (MQ=17) ttATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTa < 2:1450408/134‑1 (MQ=17) tATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc < 1:1966038/227‑1 (MQ=255) tATCCGGCCTACGGGTAGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc < 1:587048/227‑1 (MQ=255) aTCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAg > 1:1278129/1‑228 (MQ=255) ccTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑Cggg > 1:351789/1‑118 (MQ=255) cTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGa < 2:351199/118‑1 (MQ=255) cGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTTCATTTCGCCCGTAGGCAGTCCTTAAATa > 2:372609/1‑228 (MQ=255) cGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCa > 2:1403753/1‑217 (MQ=255) gggTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAg < 1:1406273/217‑1 (MQ=255) ggCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGgc < 1:837924/104‑1 (MQ=40) ggCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTCGGCCTGCTAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGtt > 1:2008980/1‑226 (MQ=255) gcgtGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACGGCCGGATGCGACAAACGTCTTTTCCGGCTCACATTTGCCCCGCAGGCAGCCATTAAGCAGtt > 2:413065/1‑225 (MQ=11) gCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGTATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTTGGCAGTCCTTAAAAAGCTCTGCTTACCCGGCTGGCaa > 2:678231/1‑228 (MQ=18) gCCTGAAAAGACGCGGTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCGGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCa < 1:751567/227‑1 (MQ=255) cTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCCTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTTAATTGTTCTGATTACGCGGCTGGCAATg > 1:1006356/1‑228 (MQ=255) gATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTCGGCAGCCATTAAATAGTTCTGATTACGCGGCTGGCAATGtt > 2:373202/1‑227 (MQ=255) aTAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAg > 2:1631071/1‑126 (MQ=32) aTAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGGCCTTAACTAGATCTGATTACGCGGCTGGCCATGTa > 2:61092/1‑227 (MQ=255) tAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAgg < 1:1633960/126‑1 (MQ=32) gACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGt < 1:908746/228‑1 (MQ=255) aCGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTc > 1:1776299/1‑161 (MQ=255) cgcgTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGtt < 1:1209879/107‑1 (MQ=32) cgcgTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTcc < 2:1773158/161‑1 (MQ=255) gTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTAAATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACCCGGCTGGCAATGTATCAGTcgcg > 1:1945177/1‑227 (MQ=255) gTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGa > 2:321196/1‑139 (MQ=21) ttAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTAc > 1:533203/1‑202 (MQ=255) ttAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGa > 1:1033030/1‑227 (MQ=255) ttAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGAt < 1:321744/139‑1 (MQ=21) tAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTAcg < 2:532327/202‑1 (MQ=255) aGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTaa > 2:1551313/1‑45 (MQ=35) aGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTaa < 1:1554078/45‑1 (MQ=35) aGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGGCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGAtt > 2:468545/1‑227 (MQ=255) gTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATTCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGTCAGTCATTCAATAGTTCTTATTACGCCGCTGGGAATGTTTCAGTCGCGATTTAc > 2:1516677/1‑227 (MQ=18) gCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCTAAGGCAGTCCTTAATTATTTTTGATTACCCGGCTGGCAAGGAATCCGTCTCGATTCActtcc > 1:1530256/1‑224 (MQ=18) cTGCGCCCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACg < 1:679359/227‑1 (MQ=255) cTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCG‑CGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGa < 2:1210137/228‑1 (MQ=255) cTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTAc > 1:90199/1‑183 (MQ=255) tGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTAcg < 2:90041/183‑1 (MQ=255) gccACGGCTGCCGGATGCGGCTTAACCGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGt < 2:1790559/226‑1 (MQ=255) cgcACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTg > 2:541486/1‑132 (MQ=255) cgcACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGt < 1:1731073/228‑1 (MQ=255) cgcACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGt < 2:1275842/228‑1 (MQ=255) cgcACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGt < 2:1031156/228‑1 (MQ=255) cgcACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGAACTCGCAACGAgg > 1:700813/1‑227 (MQ=255) gcACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGt < 1:542373/132‑1 (MQ=255) aCGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑Cgg > 1:558010/1‑51 (MQ=35) aCGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAgg > 1:1450533/1‑153 (MQ=255) aCGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTc > 1:591918/1‑227 (MQ=255) cGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc < 2:1447941/153‑1 (MQ=255) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTg > 1:547053/1‑122 (MQ=255) ccGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTCATCTTATg < 1:1766819/228‑1 (MQ=255) cGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGt < 2:546155/122‑1 (MQ=255) ggATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTCATCTTATGt < 1:1108731/227‑1 (MQ=255) ggATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTCATCTTATGt < 1:1807300/227‑1 (MQ=255) gATGCGGCGTGAACGCCTAAACCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTCATCTTATGTc < 1:413752/227‑1 (MQ=255) gATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGAt > 1:1147979/1‑104 (MQ=35) aTGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATg < 2:1145925/104‑1 (MQ=35) gcgTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTg > 1:755406/1‑50 (MQ=38) cgTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGa < 2:754131/50‑1 (MQ=38) cgTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTCATCTTATGTCGACTCGTa < 2:590949/228‑1 (MQ=255) cgTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTCATCTTATGTCGACTCGTa < 2:699638/228‑1 (MQ=255) | GCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCG‑CGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCT‑GCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTCATCTTATGTCGACTCGTA > NC_000913/375021‑375471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |