Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	753,125	0	T	A	28.6%	140.5 / 22.6	63	intergenic (‑330/+60)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
Reads supporting (aligned to +/- strand):  ref base T (39/6);  new base A (0/18);  total (39/24)
Fisher's exact test for biased strand distribution p-value = 5.20e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGTGAACATGGAAG  >  NC_000913/752946‑753339                                                                                                                                                                                      |                                                                                                                                                                                                                       aaTAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTATAATATTTACAATTTTACAATTAAACa                                                                                                                                                             >  2:523646/1‑239 (MQ=255)           aGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTATTGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTATAATACTTACAACTTAACAACACACCCTTAACTCTTg                                                                                                                                                   >  2:1358505/1‑239 (MQ=255)                           aCGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTa                                                                                                                                                                               >  1:1461841/1‑195 (MQ=255)                            cGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGa                                                                                                                                                                                                   >  1:26433/1‑174 (MQ=255)                            cGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCttta                                                                                                                                                  >  1:1908462/1‑221 (MQ=255)                                aTTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTTGCAATCAACCATTAAAGCTTGATATCGCTTTTaaa                                                                                                                                     >  1:1174895/1‑232 (MQ=255)                                              ataAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTTCAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCttt                                                                                                                >  1:1130646/1‑237 (MQ=255)                                                    gCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACa                                                                                                           >  1:2522848/1‑238 (MQ=255)                                                           ctataaaGTTTTTATATAAAAGTTTTGGTTTGTTAATATTTTGAGCTTTTTTTTTTTTTTTAAATATTTATATAGTTTTTTAAATGTTTTTTA‑TTTTAAAATTTTTTTGTT‑TTAAGTAATAAAAAAACCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAg                                                                                                                                                                       <  2:1655411/166‑1 (MQ=255)                                                                   tttttAATTGAAATTATTGGGTTGCTGATAATTTGAGTTTTTCTTTTTTTTTTAAATATCTATATAGGTTTGTTAAGGGATTTTA‑TTTTTACAATTTTTTGTT‑TTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGc                                                                                           <  1:523646/239‑1 (MQ=255)                                                                     tttAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTTAAATATTTACAACTTAGCAATCAACCa                                                                                                                                                             >  1:1655411/1‑171 (MQ=255)                                                                                 ttttggtttggtAATATTTTGATTTTTTTTTTTTTTTTTAAATATTTATATAGGTTTGTAAATGTTTTTTT‑TTTTTACATTTTTTTGTT‑TTTAGACATAAAAAAACCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCAt                                                                                                                                                            <  2:2412459/158‑1 (MQ=255)                                                                                 ttttGGTTTGCTGATATTTTGATCTTTTTTTTTTTTTTAAAATATCTATATAGGTTTGTTAATGAATTTTT‑TTTTTACATTTTTTTGTT‑TTTAGGCATAAAAAAACCACCCCGCCATATGAACGGCGGGTTaaa                                                                                                                                                                                      <  1:828327/132‑1 (MQ=255)                                                                                           ttGATAATTTGGGTTTTTTTTTTTTTTTAAAATTTCTATATAGGTTTTTTAATGGATTTTT‑TTTTTAAATTTTTTTGTG‑TTTAGGCATAAAAAAACCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCtt                                                                                     <  1:1441674/220‑1 (MQ=255)                                                                                           cTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGa                                                                                                                                                  >  1:2412459/1‑160 (MQ=255)                                                                                           cTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTACaa                                                                                                                                                                            >  2:828327/1‑134 (MQ=255)                                                                                                     gAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTTAAATATTTTCAACTTAGAAATCAACCATTAACGCTTGATATCGCTTTTTAAATCGCGTTTTTTTAATCCTTTATACAGCTGACGCGGGCGGGGAATCTTCATACCGTCa                                                                           >  2:1441674/1‑221 (MQ=255)                                                                                                        cttttttATTCTTTTTAATAATCTATATGGGTCTGTTAAGGATTTTTA‑TTTTTACATTTTTTGGTT‑TTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTg                                                       <  2:1130646/232‑1 (MQ=255)                                                                                                                     tttAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGatat                                                                                                                                               >  2:630972/1‑137 (MQ=255)                                                                                                                     tttAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGatat                                                                                                                                               <  1:630972/137‑1 (MQ=255)                                                                                                                     tttAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATc                                                                                                                    >  1:1643367/1‑164 (MQ=255)                                                                                                                     tttAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTgg                                                      >  1:2549253/1‑226 (MQ=255)                                                                                                                        agacatgtatataGGTGTTTAAATTGTTTTTT‑TTTTTCAGATTTTTTGTG‑TTAGTGAATATAAAAATAAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATCCAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCa                                          <  2:1301529/228‑1 (MQ=255)                                                                                                                            atttatatgGGTTTTTTAATGGATTTTT‑TTTTAAAAATTTTTTGTG‑TTTAGAAATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGAcg                                                                                                    <  1:2587755/170‑1 (MQ=255)                                                                                                                             tttatataGGTTTGTTAATGGTTTTTT‑TTTTTAAAATTTTTTGTT‑TTTAGGCATATAAAAATAAACCCGCCATATGAACGGCGGGTTaaa                                                                                                                                                                                      <  1:1505000/88‑1 (MQ=255)                                                                                                                              cTATATAGGTCTTTTAATGATTTTTA‑TTTTTACAATTTTTTGTT‑TTTAGGCATAAAAAAATCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCat                                                                                                                       <  1:2247038/152‑1 (MQ=255)                                                                                                                               tatataGTTTTTTTAATGTATTTTA‑TTTTTACATTTTTTTTTT‑TTTAGGCATATAAAAACCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTggg                                                     <  1:2351054/217‑1 (MQ=255)                                                                                                                               tatataGGTTTTTTATTGGTTTTTT‑TTTTTAAATTTTTTTTTT‑TTTAGGATAAAAAAAACCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCaa                                         <  1:2057376/229‑1 (MQ=255)                                                                                                                                 tataGGTTTTTTAATGAATTTTT‑TTTTAACATTTTTTTGTT‑TTAAGGAATAAAAAAAAAACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGt                                                                                                                              <  2:2118020/142‑1 (MQ=255)                                                                                                                                      gTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAAcg                                                                                                                                                                                                <  1:2353459/71‑1 (MQ=255)                                                                                                                                      gTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAAcg                                                                                                                                                                                                >  2:2353459/1‑71 (MQ=255)                                                                                                                                      gTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTTAAATATTTTCAACTTAGCa                                                                                                                                                                     >  1:1971497/1‑98 (MQ=255)                                                                                                                                      gTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTAAAACTTTGCAATCAACCATTAACGCTTGATTTCGCTTTTAAAGTCGCGTTTTTTTTAACCTTtata                                                                                                             >  1:1110274/1‑154 (MQ=255)                                                                                                                                      gTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTACAAATTAACAATTAACCATTAAAGCTTGATATCGCTTTTTAATTCGAGTTTTTCATATCCCGTATACAGATGCAGCGGACGGGCa                                                                                          >  2:2587755/1‑173 (MQ=255)                                                                                                                                       tCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATTAACCATTAACGCTTGATATTGCTTTTAAAGACGCGTTTTTTATATCCTGTATAAAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCCACCAACGGTATGGGCCATTGcca                       >  2:1058424/1‑237 (MQ=255)                                                                                                                                       tCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTaaaa                                                                                                                                                                            >  2:1505000/1‑90 (MQ=255)                                                                                                                                        cTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTTGAATATTTACAAATTAGCAATCAACCCTTAACGCCTGATATCACTTTTAATGTCCCGTTTTTCATATCCTGTATAAATCAGACCCCGACCGGCCATCTTCCTAGCGTCACTGTGCATTTCGCTCCACTGGGCGATCCACCCCACGATGCGTgtacatgcgca                      >  2:621152/1‑229 (MQ=255)                                                                                                                                        cTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTATAACTTTGCAATCAACACTTAACGGTTGATATTGCTTTTAAAGTCGCGTTTTTCATATCCTTtata                                                                                                             >  2:2247038/1‑152 (MQ=255)                                                                                                                                         tGTTAATGGCTTTTA‑TTTTTACAATTTTTTGTG‑TTTATGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTTTAATATTTACAACTTAGCAATCAACCATTAACTCCTGGTCTTGCTTTTAAAGCCGCGTTTTTCTTTTCCTGTATAACACTTAAGCCGCCCGGCAAACTTCCTATCGTCACTGTGCATTTTGCTCTAGTTTGCGATCCACCCAACGTGACGtactctttccca                      >  2:1956971/1‑227 (MQ=255)                                                                                                                                         tGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTGAAATATTTTCAACTTAGCAATCAACCATTAATGCGTGATATTGCTTTTTAAATAGCGTTTTTCATATCCTTTATACAGCTGACCCGGACTGGCAATCTTCCTAACGTCACTCTGCACTTCACCTCCGTGGGCGGTCCACCCCACGGTACATGCCATTTGGaaa                     >  2:1924139/1‑239 (MQ=255)                                                                                                                                         tGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTATAACTTAGCAAACAACCATTAACGCTTGTTATCGCCTTTAAAGTAGCGTTTTTCATATCCTGtataaaa                                                                                                          >  2:1064794/1‑151 (MQ=255)                                                                                                                                         tGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTTTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACCTGCCATTGCGaaa                     >  1:731443/1‑239 (MQ=255)                                                                                                                                         tGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCCGCCAACCGGACGTg                                >  1:1301529/1‑228 (MQ=255)                                                                                                                                         tGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAAACATTAACGCTTGATATCGCTTTTaaa                                                                                                                                     >  1:973766/1‑127 (MQ=255)                                                                                                                                         tGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAAACTAGCAAACAACCATTAACACTTGATATCCCCTTTTAAGTCGCGTTTTTCATATTCTGTATACAGCTGACGCGGACGGGCAATATTCTTATACTCACTATGCTGTTACCCCCACTGGGGGATCCACCCACCGGGACGTGcccc                            >  2:2057376/1‑230 (MQ=255)                                                                                                                                         tGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTCAAATATTTACAACTTAGCAATCAACCCTTAACCCTTGATTACGCTTTTAATGTCGCGTGTTTCATTTCATTTAAAAAGCTGACGCGGACGGGAAATCTTCATAACCACACTTTGCATTTCGCCCCAGTGGGCGAACCCGcc                                           >  2:2351054/1‑217 (MQ=255)                                                                                                                                           ttAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAAcgg                                                                                                                                                                                               >  1:1919267/1‑67 (MQ=255)                                                                                                                                           ttAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTTCAACTTATCAATCCACCATTTACGCTTGATAATGCTTTTAAAATCGCGTTTTTCATATCCTGTATACAACTGAAGCGGACTGGCAATCTTCATACCTCTACTCTGCATTTCTTTCCAGAGGGCGGTCACACCAACGGTACGTGTCTTTTCGtaaaa                   >  2:2260291/1‑238 (MQ=255)                                                                                                                                           ttAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATc                                                                                                                    >  1:2118020/1‑142 (MQ=255)                                                                                                                                           ttAATGGATTTTA‑TTTTTAAAATTTTTTGTG‑TTTAGGAATAAAAAAATAAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGc                                                                                           <  1:943265/167‑1 (MQ=255)                                                                                                                                           taaaTGGTTTTTT‑TTTTTACATTTTTTTGTG‑TTTAGGAATAAAAAAACCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCaa                                         <  1:952209/215‑1 (MQ=255)                                                                                                                                             aaacggttttattttTTAAAATTTTTGGTT‑TTAAGACATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATg                  <  1:676950/233‑1 (MQ=255)                                                                                                                                                 atttttt‑tttttAAAATTTTTTGTT‑TTTAGAAAAATAAAAACCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACtgt                                                                       <  2:2355553/179‑1 (MQ=255)                                                                                                                                                   tttta‑ttttTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTTCAACTTAGCaa                                                                                                                                                                    >  1:685744/1‑86 (MQ=255)                                                                                                                                                   tttta‑ttttTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAACAATCAACCCTTAAAGCTTGATATTCCTTTTAAAATAGCGTTTTTTATATCCTGTATAAAGCTGACGCGGCCGGGGAATCTTCATACCCTCACTGTGCATTTTCCTCCAGTGGGCGAACCAGCCCACGGTACCTGCCCTTTCGAAAATGACGGTGa           >  2:1742484/1‑239 (MQ=255)                                                                                                                                                     tta‑ttttTACATTTTTTTTTT‑TTTGGCAATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGTGAAc         <  1:1742484/239‑1 (MQ=255)                                                                                                                                                     tta‑ttttTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTTTAATATTTACAAATTAGCAATCAACCATTAACGCTTGATATCGCTTTTTAAGTCGCGTTTTTCCTATCCTTTATACAGCTGACGCCGACGGGGAATCTTCTTa                                                                                 >  2:943265/1‑167 (MQ=255)                                                                                                                                                     tta‑ttttTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTTTATACAGCTGACGCGGACGGGCAATCTTTATACCGTTACTGTGCATTTCGCTCCCGTGGGGGGTCCCGCCAACGGTACGTGc                               >  2:952209/1‑217 (MQ=255)                                                                                                                                                            ttACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAACAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATTCAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCt                                                             >  1:2355553/1‑181 (MQ=255)                                                                                                                                                              taaaTTTTTTTTGTTTTAGACATAAAAAAACCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGTGAACATGGAAg  <  1:1058424/237‑1 (MQ=255)                                                                                                                                                                         tg‑tTAAGACATAAAAAAACCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCat                                                                                                                       <  2:2409690/110‑1 (MQ=255)                                                                                                                                                                          tttttAGGCATAAAAAAATCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCAtt                                                                  <  1:912322/161‑1 (MQ=255)                                                                                                                                                                          tttttAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCAt                                                                                                                                                            <  1:863317/71‑1 (MQ=255)                                                                                                                                                                                 gaataaAAAAACCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGAcg                                                                                                    <  1:2423551/120‑1 (MQ=255)                                                                                                                                                                                    tataAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGtata                                                                                                             >  1:2409690/1‑110 (MQ=255)                                                                                                                                                                                    tataAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTACAAATTAGCAATCAACCATTTACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCt                                                                                                        >  1:1212103/1‑115 (MQ=255)                                                                                                                                                                                    tataAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTAAAAATTAGCAATCAACCATTAAAGCTTGATATCGCTTTTAAAATCGCGTTTTTTATATCCTGTATACAGCTGACGGGGGCGGGCAATCTTCATACCCTCACTGTGCATTTTGCTCCAGt                                                        >  2:912322/1‑163 (MQ=255)                                                                                                                                                                                    tataAAAATCAACCCGCCATATGAACGGCGGGGTAAAAAATTTACAAATTAGCAATCAACCATTAACGCTTGa                                                                                                                                                  >  2:863317/1‑73 (MQ=255)                                                                                                                                                                                     ataAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATc                                                                                                                    >  1:1805505/1‑102 (MQ=255)                                                                                                                                                                                      taAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGc                                                                                           <  2:2198632/126‑1 (MQ=255)                                                                                                                                                                                      taAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGc                                                                                           >  1:2198632/1‑126 (MQ=255)                                                                                                                                                                                      |                                                                                                                                                                                                                       AATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTA‑TTTTTACAATTTTTTGTG‑TTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGTACGTGCCATTGCGAAAATGACGGTGAACATGGAAG  >  NC_000913/752946‑753339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑