| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,745,397 | 0 | A | C | 35.4% | 211.0 / 25.7 | 136 | L198F (TTA→TTC) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| Reads supporting (aligned to +/- strand): ref base A (58/26); new base C (1/45); total (65/71) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.74e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 138 total aligned reads displayed.
GGTGCCGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCT > NC_000913/3745169‑3745629 | ggTGCCGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCTGG‑CATGATGATTGGGGCAAAGCTGATGGTTATCTGGGGGGGGGAGGCCAGTCGCCTT‑AATTTACCCCGCCAGc > 1:3547584/1‑239 (MQ=255) ccGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCCGG‑CATGATGATGGGCGCAACGCTGATGTTTACCTTGGGGGGGGAGGGCCGTCGCCTT‑AATTTATCCCGCCAGCaaaa > 1:244331/1‑239 (MQ=255) ccGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCCGG‑CATGATGATGGGCGCAAAGCTGATGCTTACCTGGTGGGGGGAGGCCCGTCGCCTT‑AATTTACCCCGCCCGCaaaa > 1:827839/1‑239 (MQ=255) gatgatGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCTGG‑CCTGATGATGGGGGCAACGCTGATGCTTTCCTGGTGGTGGGCGGCCCGGCGGCTT‑AATTTTCCCCCCCACCAAAAAg > 1:2342016/1‑239 (MQ=255) gatgatGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCCGG‑CCTGATGGTTGGCGCAACGCTGATGGTTAACTTGTGGGGGCAGGCCAGGCGCCCT‑TATTTACCCCGCCCGCACAAAg > 2:582527/1‑239 (MQ=255) ggcgcAGCGCCACTTATCCGGTCACCCGGGGGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCCCCAATTATCCCCCCTTCCATTCCGTTTATTATCTTCGGCATTTCCAGCGGATTATACATCAGTAAGCTGTTTATGGCGGGCATTGCCCGTGG‑CATGAGGATGGGCCCAGCGCTGAGGCTTACCTGGGGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAAc < 2:2578995/237‑1 (MQ=255) cgcCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATATCCCCCGG‑CGTGGAGATGGGCGCAACACTGATGCCTACCTGGTGGTGGCGGGCCAGGCGCCTT‑CAATTTTCCCGCCCCCAAAAAGCAACAATGCAga > 2:3478804/1‑238 (MQ=255) tacccGGTCACCCGGGGGGCGGGTCTGTTTGCCTCTGGCGGCATTATCGCGCCATTTATCCCCCCTTCCTTTCCTTTTATTTTCTTCGGGTTTTCCAGAGAATTATCCATCAGTAGGCTTTTTATGGCGGACATTACCCCGGG‑CATGATGATGGGCGCAACCCTGATGCTTGCCTGGTGATGGCAGGCAGGTCGCTTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCa < 2:2114350/227‑1 (MQ=255) aTCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTgg < 1:3140186/239‑1 (MQ=255) aCCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCTTTTCCCCCCG‑GCTTCGGGTGGGGGCACAGCTCATTCTTACCCAGGGGGGGGAGGCCCGGCGCCTT‑CATTTATCCCCCCCGCACAAAAAAACGACGAGGGAAATCTGGCCCTCcttt > 2:2478836/1‑239 (MQ=255) gggCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGtc < 1:456581/239‑1 (MQ=255) cTGATTGCCTCTGGCGGCATTATCGCGCAAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCTTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCgg < 1:2979763/233‑1 (MQ=255) ttcccTCTGGGCGCATTTTCGCGCCAATTATCCCCCCTTCCATTCCTTTTATTATCTCCGGCTTTTCCAGCGGTTTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCACCGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgcg < 2:2911509/236‑1 (MQ=255) tgtcttctGGCGGCATTATCGGCAAAATAATTCCCCTTTCCATCCCTTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGATTTTTATGGCGGGCATTGCCCCTGG‑CATAATGATGGGCGCACCGCTGTTGTTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgcg < 2:244331/234‑1 (MQ=255) cATTATCGCGCCAATTATCCCCCCTTCCATTCCGTTTATTATCTTCGGCTTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCa < 1:2328277/238‑1 (MQ=255) aTTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCCCG‑CATGGTGGTGTGCGCAACACCGCTGCCTACCCCGGGGCGGCAGGTCAGTCGCCTT‑TCTTTTCCCCCCCAGCCAAAAACAACCATGCAGGAAAATCAGCGCTCTTCTTTCTCCCGTATCTGGGCGGTGtttttttccg > 2:3295195/1‑234 (MQ=255) cgcCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGAt < 2:1579155/178‑1 (MQ=255) aatttctCCCCCTCCGCTTCCTTTTATTATCTTGGGCTTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCGTTGCCCGTGG‑CATGATGAGGGGCGCACCGCTGATGCTTACCGGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTg < 2:3547584/233‑1 (MQ=255) ttattCCCCCTTCCATTCCTTTTATTATCTTCGGCGTTTCCAGGGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGc < 1:3437727/239‑1 (MQ=255) ccccTTCCATTCCGTTTATTATCTTCGGCTTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGc < 1:2145314/168‑1 (MQ=255) cTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCCGG‑CATGATGATGGGGGCAAAGCTGATGGTTTCCTGGGGGGGGCCGGGCAGGCGCCCT‑TATTTACCCCCCCAGCAAAAAACAACGGTGCAGGAAATCTGGCACTCTTTTGTCTCCGGGATCTGGGCGCCGGTTCCTTCAGTCATCATTATTTGCggggg > 2:3437727/1‑233 (MQ=255) tCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGGCTTTCCCCCGG‑CATGATGATGGGCGCCACGCTGATGCTTACCTGGTGGTGGGGGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAACAACGATGCAGGAAAACtt > 2:2145314/1‑167 (MQ=255) tCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑ACTTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTTTCTCCGGTATATTGGCGCTGTTTCTTCCCGTCATCATTATTGGCGGGgtttttgtctgc > 2:2107539/1‑229 (MQ=255) tttATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGGTTGTGGCGGGCATTGCCCCGGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGGGGCAGGCGAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCAc < 1:636399/168‑1 (MQ=255) tCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CCTGATGATGGGGGCAACGCTGATGCTTACCTGGGGGGGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCCAAAAGCAACGATGCAGGGAAACTGGCACTCTTTTTTCTCCCGGATCTGGgc > 2:552961/1‑181 (MQ=255) tCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CCCGATGATCGGCGCCACGCCGATGCTTGCCTGTGGGGGGCAGGCGACTCGCCCT‑ACTATCACCCCCCCGCACAAAGCAAAGATGCGGGGAAACTCGTCCTCTTTTGtgt > 2:636399/1‑166 (MQ=255) ttATCCTGCAGTAAGCTGTTGAGGGGGGACATTGCCCCTGG‑CATGATGAGGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGCCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTtgc < 2:827839/239‑1 (MQ=255) tATCCATCAGTAAGTTGTTTATGGCGGGCATTGCCCCGGG‑CATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTtgct < 1:571255/239‑1 (MQ=255) tCCATCAGTAAGCTTTTTATGGGGGGCATTGCCCCTGG‑CATGATGATGGGCGCACCGCTGATGCTTACCGGGTGGGGGCGGGCCAGTCGCTTT‑AATTTACCCCGCCAGCaaaa < 2:3172185/113‑1 (MQ=255) cAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAgg < 1:1367871/122‑1 (MQ=255) tttATGGCGGGCATTGCCCCTGG‑CATGATGATGGGGGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCCTT‑AATTTAACCCGCCAGCAAAAAGCAACAATGCAGGAAAACTGGCa > 2:1367871/1‑122 (MQ=255) tttATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCg < 1:1027078/182‑1 (MQ=255) tttATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCa < 1:177858/122‑1 (MQ=255) tttATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGtt < 1:366383/219‑1 (MQ=255) tttATGGCGGGCATTGCCCCTGG‑CATGATGAGGGGCGCACCGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACg < 1:2883732/105‑1 (MQ=255) aTGGCGGGCATTGCCCCGGG‑CATGATGATGGGCGCAACGAGGATGTTTCCCTGGGGGTGGCAGGCAAGTCGCTTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGt < 1:1067163/239‑1 (MQ=255) cGGGCTTTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGc < 1:582527/238‑1 (MQ=255) tgaattccccTGGTCATGATGGTGGGCCAAACGTAGGTGTTTACCTGGTGGTGGAGGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 2:1468142/232‑1 (MQ=255) gCATTTCCCCCGG‑CATGATGATGGGCGCAACGCTGATGCTTACCCGGGGGGGGCAGGGCAGTCGCCTT‑AATTTACCCCCCCAGCCAAAAACAAAGAAGCAGGGAAACTTGCACTCTTTTGTCTCCCGGATCTTGgc > 2:1296633/1‑136 (MQ=255) gCATTGCCCCTGG‑CATGATGATGGGGGCAAAGCTGATGGTTACCTGGGGGGGGGGGGGCAGGCGCCTT‑TATTTACCCCCCCCGCAAAAAGCAACGATGCAGGAAAACTGGCACTCTTTTTtc > 2:177858/1‑122 (MQ=255) catgcccccTGG‑CATGATGATGGGCGCAACGCTGATGCTTCCCCGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCcaca < 1:1296633/233‑1 (MQ=255) cATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCcaca < 1:16422/238‑1 (MQ=255) ccccTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:2290306/1‑130 (MQ=255) cTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1149653/1‑127 (MQ=255) gg‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGtc > 1:1433221/1‑111 (MQ=255) tgatgatgGGCGCAACGCGGATCCTTCCCTGGGGGGGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCaaaa < 2:2413375/73‑1 (MQ=255) gatgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:3392890/1‑120 (MQ=255) tgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGtt < 1:2585494/151‑1 (MQ=255) tgaggGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGc < 1:1744335/217‑1 (MQ=255) tgGGCGCACCGCGGATGCTTCCCGGGTGGTGGCGGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGTTGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGAc < 1:3115445/238‑1 (MQ=255) tgGGCGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCATTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGAc < 1:1759549/238‑1 (MQ=255) gggCGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCCTT‑ACTTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1881039/1‑114 (MQ=255) cgcAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATg > 1:2413375/1‑73 (MQ=255) cAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGaa > 2:2919984/1‑77 (MQ=255) cAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGaa < 1:2919984/77‑1 (MQ=255) aaCGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCtttt > 1:1552393/1‑91 (MQ=255) aaCGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCtttt < 2:1552393/91‑1 (MQ=255) aaCGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1744335/1‑108 (MQ=255) aaCGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGcc < 1:3543017/238‑1 (MQ=255) cGCTTATCCTTCCCGGGTGGGGGCAGCCCATTCGTCTT‑ATTTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCcaca < 1:2981743/239‑1 (MQ=255) gtGATGCTGACCGGGTGGTGGCAGGCAAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 1:1926979/238‑1 (MQ=255) cTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCatta < 2:1149653/127‑1 (MQ=255) tGATGCTTCCCTGGTGTGGGCAGGCCAGTCGCTTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 1:62419/238‑1 (MQ=255) tGATGCTTCCCTGGTGGGGGCGGCCCAGCCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 1:1766783/238‑1 (MQ=255) tGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 1:552961/238‑1 (MQ=255) gtttccttgttggtggCGGGCAGGCCGCTTT‑ATTTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGc < 1:1570164/229‑1 (MQ=255) gCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGc < 1:2478836/239‑1 (MQ=255) acttcctgggtggtggCCGGCCA‑TCCCCTTAAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGc < 2:590718/231‑1 (MQ=255) ttACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:2225735/198‑1 (MQ=255) tACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:3547900/1‑96 (MQ=255) aCCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:94898/1‑95 (MQ=255) aCCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:2962337/1‑95 (MQ=255) ggtggtggCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1678937/1‑91 (MQ=255) ggtggtggCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1279104/1‑91 (MQ=255) ggtggtggCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:26670/1‑91 (MQ=255) gtggtggCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:210062/1‑90 (MQ=255) tggtggCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:106382/1‑89 (MQ=255) tggtggCAGGCCAGTCCCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCgg < 1:3435966/131‑1 (MQ=255) ggtggCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:3094216/1‑88 (MQ=255) gtggCAGGCCAGTCGCTTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:188316/188‑1 (MQ=255) tggCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:405949/1‑86 (MQ=255) ggCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:119672/1‑85 (MQ=255) gCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:508614/1‑84 (MQ=255) ggCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGaa > 2:777343/1‑49 (MQ=255) ggCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGaa < 1:777343/49‑1 (MQ=255) gCCAGTCGCCTT‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGtt < 1:1394796/128‑1 (MQ=255) gCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:2459291/1‑80 (MQ=255) gCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:2867394/1‑80 (MQ=255) gCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:570834/1‑80 (MQ=255) gCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc < 1:1200453/80‑1 (MQ=255) gCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1200453/1‑80 (MQ=255) ccAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:3435966/1‑79 (MQ=255) ccAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:2217894/1‑79 (MQ=255) aGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:188316/1‑77 (MQ=255) ccccTT‑AAGTCACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAac < 1:2146646/237‑1 (MQ=255) cGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAac < 1:1519707/239‑1 (MQ=255) tt‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1394796/1‑70 (MQ=255) t‑AATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGTAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCt < 1:2681211/239‑1 (MQ=255) aaTTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:3251553/1‑68 (MQ=255) aTTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGc < 1:3256443/136‑1 (MQ=255) | GGTGCCGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGG‑CATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTT‑AATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCT > NC_000913/3745169‑3745629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |