| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,745,397 | 0 | A | C | 39.7% | 105.2 / 15.3 | 82 | L198F (TTA→TTC) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| Reads supporting (aligned to +/- strand): ref base A (31/16); new base C (0/31); total (35/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.32e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACTGGTGCCGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAG > NC_000913/3745166‑3745632 | aCTGGTGCCGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGTCCATTGCCCCT‑GCATGATGATTGGCGGCACGCTGTAACTTATCTGGTGGTTGGGGTGCCGTCGCCCTCATTTAACCCAcc > 2:139031/1‑239 (MQ=255) ccGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCCTGGTGATTGGCGCAACGCTGTGGCTTACCTGGTGGTGGCACGCCGGTCGCCtttattta > 2:466330/1‑225 (MQ=255) gggccAGCCCCAAGTAACCGGTCAGCCGGGGGGCGGGGTGTATTGCCTCTGGCGGCTTTACCGGCCCAATTTTTCCCCCTTCCATTCCTTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTTTTTAGGGCGG‑GCTTTGCCCCTGGCATGATGATGGGCGCACCGCTGATGCTTACCTGGGGGGGGCGGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAAc < 2:1463861/234‑1 (MQ=255) gcgcAGCGCCACCTTTCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGAATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGa < 1:859629/239‑1 (MQ=255) cgcCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGGGCAACGCTTATGGTTACCTGGGTGTGGCAGGCCCGTCGCCTTAATTTTCCCCGCCCGCAAAAAGCAACGAGGCAgg > 1:205631/1‑239 (MQ=255) ccGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCCGGGATGATGATGGTCGCCACGCCGATGCTTACCTGGGGGTGGGCGGCCAGGCGCCTTTTTTTACCCCGCCCGCAAAAAGCAACCCTGCAGGGAAACttgg > 2:1817349/1‑235 (MQ=255) gTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTTCCCCCGGCATTTTGATGGGCGGAACGCCTATGCTTACCTGGTGGTGGGGGGCCAGACGCCTTAATTTACCCCCCCCGCACAAATAAAAGATGCAGCAAATCTTGc > 2:830006/1‑235 (MQ=255) gggCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCTTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTAGGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGtc < 1:2063247/239‑1 (MQ=255) cggcggGGTTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTTTTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGtctc < 1:1817349/238‑1 (MQ=255) cgcggggtCTGATTCCTTCGGGCGGCATTGTCGCCCCATTTATTCCCCTTCCCATCCCGTTTATTATCTACGGCGTTGCCAGGGGATTATCCATCAGAAAGCTGTTTATGGCGG‑GCATTGCCCCTGGAATGATGATGGGCGCAACGCTGAGGCTAACCGGGTGGGGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGAACTCTTTTGtctc < 2:2038057/234‑1 (MQ=255) cggGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GGCTTTCCCCCGTCTTGATGGCTGGCGCCACGCTCTTCCTTTCCTGGGGGTGGCAGGCCCGGCGACCTAACTTACCCCCCCAGCAAAAAGCAACGATTCAGGCACTCTGGCACTCTTTTGTCTCCggg > 2:1595902/1‑238 (MQ=255) ggcATTATCGCCCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTttcttc < 1:2226578/238‑1 (MQ=255) ctttACCGCGCCATTTATTCCCCCTTCCATCCCGTTTATTTTCTCCGGGTTTTCCAGCGGATTATCCATCATTAAGCTTTTTATGGCGG‑GCATTGCCCTTGGCATGATGTTGGGCGCACCGCTGTTGCTTCCCTGGTGGTGGCAGGCCGGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCa < 2:1752615/236‑1 (MQ=255) cagtATCGCGCCAATTATTCCCCCTTCCTTTCCGTTTATTATCTTCGGCGTTGCCAGCGGATTATCCATCGGTAAGCTGTTTAGGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCGGGAAATCTGGCACTCtt < 1:1933778/203‑1 (MQ=255) aTTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAg < 1:52867/238‑1 (MQ=255) ccAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGGCTGATGATGGGGGCAAAGCTGTTGCTTTCCTGGGGGGGGGCGGGCAGGCGCCTTAATTTATCCCGCCCGCAAAAAAAAACGAGGCGGGAGATCTGGGACTCTTTTTTTTCCgg > 2:1933778/1‑206 (MQ=255) atttattCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCGTCAGTAAGCTGTTTAGGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCATTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTg < 1:1790760/237‑1 (MQ=255) cccccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGtt < 1:212579/239‑1 (MQ=255) ttCCATTCCGTTTATTTTCTTCGGCTTTACCAGCGGATTATCCATCAATAAGCGGTTTATGGCGG‑GCATTGCCCATGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑t < 1:1301505/239‑1 (MQ=255) ttCCATTCCGTTTATTATCTTCGGCCTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCACCGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCaaaa < 1:1200184/153‑1 (MQ=255) tCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCCTGATGATGGGCGCCACGCTTATGCTTACCTGGTGGGGGCAGGCCAGTCGCCCTAATTTTCCCCCCCCGCAAAAAGCAACCGTGCAGGAAATCTGTCACTCTTTTGTCTCCGGGATCTGGGCCCCGTTTTTTCCCATCTTCCTTATTTGCgggg > 2:837106/1‑231 (MQ=255) ccttttATTATTTTCGGCCTTTCCGGCGGATTACCCATCAGTAAGCTGTTTATGGCGG‑GCTTTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGc < 1:419683/234‑1 (MQ=255) tttATTATCTTCGGCTTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCGGTCCCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgcg < 1:875763/192‑1 (MQ=255) tttATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTTCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGGGGCAGGGCAGTCGCCTTAATTTTCCCCCCCCGCCAAAAGCAACGaatc > 2:1200184/1‑151 (MQ=255) ttattaTCTTCGGCTTTTCCAGGGGATTACCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGtt < 1:1543060/238‑1 (MQ=255) tCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTTCCCCCGGCATGATGATGGGGGGAAAGCTGATGCTTACCTTGTGGTGGCCGGCCAGGCGCCCTAATTTTCCCCGCCCGCAAAAAACAACGATGCAGGAAAACCTGCACTCTTTTTTCTCCCGATTCCGTGCGCTGTTTTTTCCCGTCTTCATTATTGGGGCGTTGCTCTTCCGGCCGATTTTCTCCTAc > 2:953192/1‑239 (MQ=255) tCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCCGGCATGATGATGGGCGCAAAGCTGATGCTTACCTGGTGGGGGGGGGGCCGTTGCCTTTATTTACCCCCGCCGCAAAAAACCACGATGGAGGGAATCCGGCACTCTTTTTTTCCCCGGATTTGGGGGCTGttttctc > 2:875763/1‑188 (MQ=255) ggCTTTTCCAGCGGATTATCCATCAGTAAGCTGTTTTTGGCGG‑GCATTCCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCGGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGTCAGCa < 2:1618036/128‑1 (MQ=255) gCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCCTTTCCCCCTGCATGATGTTGGGCGCAACGCTGATGCTTACCTTGGGGGGGCAGGCCACTCGCCTTAATTTACCCCGCCCACAAAAAGCaaag > 1:1618036/1‑126 (MQ=255) aTTATCCATCAGTAAGCTGTTTATGGCGG‑GCAATGCCCCCGGGATGGTGGTTGGGGCAACGCTGATGCTTACCTGGGGGGGGGAGGCCAGTCGCCTTAATTTACCCCGCCCGCCAAAAGCAACGATGCAGGAAAACTTGGACTCTTTTTTCTCCGGGATCTGGgc > 2:1181255/1‑165 (MQ=255) atcaatcaTTAAGCTGTTTATGGGGG‑GCATGGCCCCTGGCATGATGATGGGCGCAACGCGGATGCTTACCGGGTGGTGGCAGGCCATTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTtgctg < 1:139031/239‑1 (MQ=255) cAGTAGGCGGTGTATGGCGG‑GCGTTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCggg < 1:2179217/223‑1 (MQ=255) aaGTAGGCTGTTTAGGGCGG‑GCATGGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTg < 1:1904955/139‑1 (MQ=255) tttATGGCGG‑GCATTTCCCCCGGCATGATGATGGGCGCAACGCTGATGCTTACCCGGGGGGGGCAGGCCAGTCGCCTTTATTTACCCCGCCAGCAAAAAACAACGGTGCAGGAAAACTGGCACTCTTTTGTCTCCGGGAt > 2:1904955/1‑140 (MQ=255) ttAGGGCGG‑GCATTCCCCCTGGACAGATGGTGGGCGCCACGCTGAGGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTATTTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGtt < 1:1534762/238‑1 (MQ=255) agggCGG‑GCATGCCCCCTGGCATGATGTTGGGCGCAACGCTGATGCTTACCGGGTGGTGGCAGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGt < 1:20798/237‑1 (MQ=255) cGG‑GCATTGCCCCTGGCATGAGGATGGGCGCAACGCTGAGGCTTACCTGGTGGGGGCAGGCCAGTCCCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGc < 1:1018048/238‑1 (MQ=255) g‑gCTTTGCCCGTGGGATTGTGGTGGGCGCAACGCGGTTGCTTCCCTGGGGGTGGCAGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:469940/238‑1 (MQ=255) g‑gCATTGCCCCTGGCATGATGAGGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:2003039/238‑1 (MQ=255) g‑gCATTGCCCCTGGCATGATGAGGGGCGAAACGCTGATGCTTCCCGGGTGGTGGCAGGCCGGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:465360/238‑1 (MQ=255) gCCCCGGGCTTGTTGAGGGGCGCAACTCTGATGTTTACCGGGTGGTGGCAGGCCTGTCGTCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:1955512/232‑1 (MQ=255) ggCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:735548/1‑125 (MQ=255) gCATGATGAGGGGCACACCGCTGATGCTTACCGGGTGGTGGCGGGCCAGTCGCCTTATTTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCg < 2:205631/238‑1 (MQ=255) tgatgGGCGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTtgctgc < 1:879499/196‑1 (MQ=255) gatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1289503/1‑117 (MQ=255) gggCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGa > 2:513987/1‑81 (MQ=255) gcgcAACGCTGATGCTTACCTGGGGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1911354/1‑112 (MQ=255) cAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCaaaa > 2:1393292/1‑61 (MQ=255) cAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCaaaa < 1:1393292/61‑1 (MQ=255) cAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1493454/1‑109 (MQ=255) aaCGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:879499/1‑108 (MQ=255) cGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1820594/1‑106 (MQ=255) gCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTtg < 2:2062524/179‑1 (MQ=255) ttGATGCTTCCCTGGTGGGGGCAGCCCGGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 1:1036660/238‑1 (MQ=255) cTGATGCTGACCGGTGGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 2:1820594/239‑1 (MQ=255) ggtgtttcccTGGGGGGGGCAGGCCGGTCCCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACttt < 1:273637/231‑1 (MQ=255) gATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1273034/1‑102 (MQ=255) aTGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAAATTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1154979/1‑101 (MQ=255) aTGCTTACCTGATGGTGGAAGCCCTGTACCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 2:1514912/236‑1 (MQ=255) gCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGc < 1:735548/239‑1 (MQ=255) aCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:2062524/1‑95 (MQ=255) ggtggtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1422122/1‑91 (MQ=255) ggtggtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:570660/1‑91 (MQ=255) ggtggtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1514912/1‑91 (MQ=255) ggtggtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:441024/1‑91 (MQ=255) gtggtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:301488/1‑90 (MQ=255) gtggtggAAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTa < 1:1545163/235‑1 (MQ=255) tggtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:762006/1‑89 (MQ=255) gtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:772372/1‑87 (MQ=255) cAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGCTGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:241414/1‑83 (MQ=255) ccAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCca < 1:1637576/180‑1 (MQ=255) ccAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGgcg < 1:837106/234‑1 (MQ=255) ccAGTCCCTTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGgcg < 1:1181255/234‑1 (MQ=255) gTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGaaa > 2:364744/1‑45 (MQ=255) gTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 1:1599269/1‑76 (MQ=255) tCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGt < 2:301488/90‑1 (MQ=255) cGCCTTAATTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGaa < 1:728405/236‑1 (MQ=255) cGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAac < 1:547439/239‑1 (MQ=255) gCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACt < 1:1708750/208‑1 (MQ=255) tAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1637576/1‑69 (MQ=255) aaTTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTG‑CTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCa < 1:1322816/239‑1 (MQ=255) aTTTCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCa < 1:1595902/239‑1 (MQ=255) tttCCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAg < 1:1659678/239‑1 (MQ=255) aCCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGgc > 2:1708750/1‑63 (MQ=255) | ACTGGTGCCGATGATGCGCAGCGCCAACTATCCGGTCAACCGGGCGGCGGGGCTGATTGCCTCTGGCGGCATTATCGCGCCAATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGG‑GCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACGATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGC‑TCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATGCGCTGTTTGTCGCCACAGTTATTTACCGTGAAATGACCTTCGCCACACTTTGGCATGTACTCATTGGCGCGGCGAAAACCACCTCAG > NC_000913/3745166‑3745632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |