| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,201,278 | 0 | A | C | 30.1% | 160.5 / 12.7 | 73 | G137G (GGT→GGG) | zraP | Zn‑dependent periplasmic chaperone |
| Reads supporting (aligned to +/- strand): ref base A (43/8); new base C (0/22); total (43/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.28e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTGC > NC_000913/4201042‑4201508 | ggggCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTAAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGGGGCAAACTTTGATTTCTGTCGTTGGCAACCCAA‑CCAGAAAA‑CGTTTCGATTTACCAGTGGcccata‑c > 2:12608/1‑238 (MQ=255) aCCGTGACCACCTGCGAAGGGCAAACCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCCGTGGCCCATA‑CCCATATGACCGCCACCACCAC‑Agcc > 1:2042643/1‑238 (MQ=255) aCCGTGACCACCTGCGAAGGGCAAACCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑Agcc > 1:721965/1‑238 (MQ=255) cggTGACCACCTGAGAAGGTCACCCCAGAAAA‑CCTGATTTTGATTCGCAGGCGATGCCGCATAGCGAGCGCCCCCAGAGCCGCTCTTCTTTAGTGGTCAGCGGGGCATGGCTGAAAGCCCCCGAAGGTTCACAATTACTGTTATTGGCAAACTCTGATTTCTGTCGCGGGCAACCCAC‑CGAGAAAG‑CGTTCTTATTTCCCAGTGGCCCATC‑CCCATATGCCCGCCACCATCGC‑Ag < 2:1576315/233‑1 (MQ=255) ccGTGACCACCTGCGAAGGGAAACCCTTTAAA‑CCTGATTGAGATTCGCAGGCGATCGCGAAGATCGGGCGCCCCCAGAGCCGCTTTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTCCGCAATTACTGTTAGTGGCAACCTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAC‑CGTTCTGATTTCCCAGTGGCCCATC‑CCCATATGACCGCCCCCACCGC‑Agc < 2:272430/236‑1 (MQ=255) tGACCACCTGCGAAGGGCAAACCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGt > 1:487877/1‑239 (MQ=255) cacgggCGAAGGG‑AAACCAATAAACCCTGATTTAGATCCGAGGGGGAGGGCGCATATCGCGGGCCGCCGGGGCCGCTCTTTTGTGGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCAAA‑CGAGAAAA‑CGTTCTGATTTCCCAGTGGCCCATC‑CCCATATGACCGCCCCCCCCGC‑AGCCGCCGTAgcc < 2:2125569/234‑1 (MQ=255) ccTGCGAAGGGCAAACCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAgccca > 1:1845970/1‑239 (MQ=255) gCAAACCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAgc > 1:163986/1‑226 (MQ=255) aCCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTCGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCCA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑CGCAGCCGTAccccatgcccat > 2:1468071/1‑232 (MQ=255) aCCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAgcccatgcccat > 1:656654/1‑232 (MQ=255) gATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCCCCGCGCGGAAt > 1:741733/1‑238 (MQ=255) aTTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAACCCATGCCCATTCCGGCTCCCCGCGCACTACCCGCt > 2:1707934/1‑238 (MQ=255) atatCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCCCGATAtctc > 1:1829878/1‑239 (MQ=255) gggcgcCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATC‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTc < 1:426413/237‑1 (MQ=255) cgcgtcagccAGTCCCGCTTTTCTTGTGATGTCAGCGTGGCAGGGCGGGAAGCGCCCAAGGGTCCGCAATTACTGTTAGGGGCAAGCTCTGATTTCGTGCGCTGGAAACCCAA‑CGAGAAAA‑CGTTCTGATTGCCCAGGGGCCCATC‑CCCATATGCCCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGttt < 2:1666348/231‑1 (MQ=255) aGCGCCCCCAGCGCCGCTCTTCGTTTAATTTCAGCGGGGCAGGGCGGGAAGCGCCCGAAGGTTCGAAATTACTTTTAGGGGCAACCTCTGATTTCTGCCGCGGCCAACCCAA‑CGAAAAAC‑CGTTCTGTTTTCCCAGTGCCCCATC‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGttt < 2:869623/237‑1 (MQ=255) cgccgcCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCAACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCAc > 1:24521/1‑238 (MQ=255) gccgccAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCcccc > 1:1242729/1‑239 (MQ=255) gccAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTTGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAC‑CGTTCTGATTTACCAGTGACCCAGA‑CCCATATGACCGCCGCCACCGC‑AGCCGCCGCCGCCCATGCCGAGTCCAGCTCCGCGCGGCATACCCGCCTCAGCCATCGCGATATCTCGTTTCatacgga > 2:231464/1‑233 (MQ=255) gTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGAcc > 2:1235702/1‑127 (MQ=255) gTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGAcc < 1:1235702/127‑1 (MQ=255) gTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGCATACCCGCTTCAGCCATCGCGATATCTCGGTTCACCCGTAACTCATCTAACGACTGCAGCaaa > 2:1632035/1‑239 (MQ=255) gTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCaaa > 1:287301/1‑239 (MQ=255) cGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGcccata‑c < 1:2000929/112‑1 (MQ=255) cGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGcccata‑c > 2:2000929/1‑112 (MQ=255) gtgtCAGGGCTGGAGGCGCCCGAAGGTTCACAATTACTGTTATGGCCAAACCTTGTTTTCTGTCGCTGGAAACCCAA‑CGAAAAAA‑CGTTCTGATTTCCCAGGGGCCCATC‑CCCATATGTCCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTcc < 2:287301/239‑1 (MQ=255) tgCAGGGCGGGAACCCCCCGAAGGTTCGCATTTACTGTTAGTGGAAACCTCTGATTTCTGCCGCTGGCACCCCAA‑C‑AGAAAACCTTTCGAATTTCCCAGTGCCCCATC‑CCCATATGCCCGCCACCCCCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCa < 2:721965/237‑1 (MQ=255) gCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCt > 1:1336280/1‑158 (MQ=255) cATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCCCGTTTCACCCGTAACTCATCTAACGACTGACGCACATTCTCCAtc > 1:214089/1‑238 (MQ=255) gCTGGAAGCGCCCGAAGGTTCGCAATTACTTTTAGTGCAAAACTCTGATTTCTGCCGCTGCCAACCCAA‑CGAGAAAC‑CGTTCTGATTTACCAGTGCCCCATC‑CCCATATGCCCGCCACCACCGC‑Ag < 2:764611/126‑1 (MQ=255) aGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGcccata < 2:1379681/96‑1 (MQ=255) aGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGcccata > 1:1379681/1‑96 (MQ=255) cccGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAgc > 1:764611/1‑126 (MQ=255) cccGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACcgcg > 1:557400/1‑239 (MQ=255) cccGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGCTTCACCCGTAACTCACCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACcgcg > 1:1804220/1‑239 (MQ=255) cccGAAGGTTCGCAATGTCTGTTAGTGCCAAACTCTGATTTCGGTCGCTGAAAACCCAA‑CGAGAAAC‑CGTTCTGATTTACCAGCGGCCCAAC‑CCCATATACCCGCCACCCCCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGtt < 2:400699/183‑1 (MQ=255) ccagagggTTCGCATATACTGTTGGTGACAACCGCGGATTTCTGTCCATGGCAACCCCA‑CGAAAAAC‑CGTTCTGATTTCCCAGTGGCCCATC‑CCCATAGGACCGCCCCCCCCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTc < 2:1426643/179‑1 (MQ=255) cGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGTCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTaa > 1:400699/1‑183 (MQ=255) cGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACt > 1:1426643/1‑185 (MQ=255) gCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTtgc > 2:1520276/1‑238 (MQ=255) aGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTgg > 1:1540034/1‑239 (MQ=255) tGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGccgccg < 1:1901500/97‑1 (MQ=255) tGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGccgccg > 2:1901500/1‑97 (MQ=255) tGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCcgc < 2:76309/122‑1 (MQ=255) tGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCcgc > 1:76309/1‑122 (MQ=255) tGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTcc < 1:816069/196‑1 (MQ=255) tGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTcc > 2:816069/1‑196 (MQ=255) cAAACTCTGATTTCGGGCAGTGGAACCCCAC‑CGAGAAAC‑GGTTCCAATTTACATGTGGCCCATC‑CCCATATGACCGCCCCCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTc < 2:1927479/238‑1 (MQ=255) ctctGATTTCTGCCGCGGGAACCCCAA‑CGAGAAAC‑CGTCCTGATTTCCAAGGGCCCCATC‑CCCATATGCCCGCCACCACCGC‑AGCCGCCGTAgcccatgcc < 2:1857988/101‑1 (MQ=255) ttttCGGCCGCGGGAAACCAAC‑CGGGAAAA‑CGTCCTGTTTTCCCAGGGCCCCATC‑CCCTTTTGCCCGCCCCCCCCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCcgcg < 2:268817/110‑1 (MQ=255) aTTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAgcccatgc > 1:1306310/1‑95 (MQ=255) tttCTGTCGCGGGCAACCCAA‑CGAGAAAA‑CGTTCGGATTTCCCAGGGGCCCATA‑CCCATATGACCGCCACCCCCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACa < 1:1322889/238‑1 (MQ=255) tGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGcccata < 2:1289010/50‑1 (MQ=255) tGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGcccata > 1:1289010/1‑50 (MQ=255) tGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCt > 1:1857988/1‑101 (MQ=255) tGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTgg > 1:1407384/1‑220 (MQ=255) ttcccgggCCACCCAA‑C‑AGAAAACCTTTCTGATTTCCCAGGGGCCCATC‑CCCATATGCCCGCCCCCCCCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCAt < 1:804270/233‑1 (MQ=255) gccGCTGGCACCCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATC‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCAt < 1:275784/237‑1 (MQ=255) gTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAgg > 2:2200133/1‑235 (MQ=255) gTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAgg < 1:2200133/235‑1 (MQ=255) gTCGCTGGCAACCCAA‑CGAGAAAA‑CGGTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGACTACCCGCTTCAGCCCTCGCCATATCTCGTTTCACCCGTAACTCATCTAACGATTGACGCAAATTCTCCATATCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCAt > 2:202739/1‑239 (MQ=255) ctgccggcaaaCCCAA‑CAAAAAAA‑CTTTCAGATTTCCCAGTGCCCCATC‑CCCATATGCCCGCCCCCCCCGC‑CGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCAt < 2:557400/230‑1 (MQ=255) ctCGCTGGCAACCCAA‑CGAGAAAC‑GTTTCTTGTTTCGCAGGGCCCCATC‑CCTACATGACC‑CCCCCCCCGCAAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCACCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCa < 2:1804220/237‑1 (MQ=255) gcGCTGGCAACCCAA‑CGAAAAAA‑CGTTCTGATTTCCCTGTGGCCCATC‑CCCATAAGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCAt < 1:1743228/237‑1 (MQ=255) gCTGGCACCCCAA‑CAAAAAAA‑CCTTCCGATTTCCCAGTGCCCCATC‑CCAATTTGCCCGCCCCCCCCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGt < 1:951870/239‑1 (MQ=255) atgggCAACCCAA‑CAAGAAAA‑C‑TTACGATTTTACCGCGGCCCAAACCCCATATCACCGCCACCACCGC‑ACCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGt < 2:1326469/236‑1 (MQ=255) cctgCAACCCAACCGAGAAAC‑CTTCCGGATTACCCGGTGCCCCATC‑CCCATGTGACCGCACCCCCCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGt < 2:1242729/236‑1 (MQ=255) cTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATAccc > 1:268817/1‑111 (MQ=255) ggCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTAt > 1:2257484/1‑238 (MQ=255) aCCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGTCGAACGCGTTACTTTTGCTGCTATCCGGTGTGTTCGCGGCTAACAGGGCATTGTATTCATa > 2:1505565/1‑239 (MQ=255) a‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGCCATTGTATTCATAACGCt > 1:1097505/1‑239 (MQ=255) gaAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCg > 1:1889695/1‑238 (MQ=255) aa‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCa > 2:1420473/1‑238 (MQ=255) aCCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCgg > 1:325781/1‑192 (MQ=255) ccAGTCGCCCAAC‑CCCATAGGCCCGCCACCACCCC‑CGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCa < 1:1632035/239‑1 (MQ=255) ggCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTcgcg < 1:1281585/185‑1 (MQ=255) ggCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTcgcg > 2:1281585/1‑185 (MQ=255) ggCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAggg > 1:1727662/1‑195 (MQ=255) ggCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTgc > 1:2149085/1‑238 (MQ=255) cccata‑cccataTGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTgc > 1:2195997/1‑236 (MQ=255) | GGGGCGCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAA‑CCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAA‑CGAGAAAA‑CGTTCTGATTTACCAGTGGCCCATA‑CCCATATGACCGCCACCACCGC‑AGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTGC > NC_000913/4201042‑4201508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |