| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,383,722 | 0 | G | A | 24.0% | 97.4 / 11.7 | 50 | F80F (TTC→TTT) | ycjW | LacI family putative transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (35/3); new base A (0/12); total (35/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.75e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA > NC_000913/1383488‑1383948 | ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCCACACT‑TCagagc > 2:630317/1‑235 (MQ=255)ggCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCagagt > 1:692003/1‑235 (MQ=255) cATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTAGCGGTGATGGCATGCAAAACT‑TCAGAGaaa > 1:542177/1‑236 (MQ=255) tCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTAc > 1:293468/1‑235 (MQ=255) cAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACTTCGAAACCTTCTTCTTCAGCTTTGGCGGGGCTGGCATGCAAAACT‑TCAGAGCAAAACGGATTAcac > 2:41176/1‑234 (MQ=255) ttGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGTCGGTGATGGCATTCAAAACT‑TCAGAGAAAAACGGATTAca > 2:348311/1‑229 (MQ=255) caccaccacCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCATAGACAAACGGATTACCCGCCGTAGGTTTgg > 2:99754/1‑236 (MQ=255) ccaccGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGGGATGGCATGCAAAACT‑TCAGAGAAAAAACGATTACCCGCCGTAGTTTTGGCCGaa > 1:359669/1‑236 (MQ=255) ccGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTATCCGCCGTAGTTTTGGTCGAACgg > 1:276863/1‑236 (MQ=255) gAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGACAAACGGATTACCCGCCGTAGGTTTGGTCGAACGGGtc > 2:71865/1‑235 (MQ=255) taatttttATCGA‑TTTGGCAAAAAATTGCTTATTCCTCGGGCGAAC‑TGCGTTTAAT‑ATTCCTTTAATTTTTTTTCTTCTTATTTTTGCTTTCGCTTTTTTGCAGATCTTCTGCCGTTTTGTGCGACTTTTGTAATATCACGTCAAAACCTTCTTCTTCAGTTTGGGCGGTGATGGCATGAAAAACT‑TCAGAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAAt < 2:626265/231‑1 (MQ=255) tCATATTCAGCGAGTTGGCAAAAAAATGACTCA‑TCCGATGGAGAAC‑TGAGTATAATAATGCTTTTAA‑TCTTTTTCTGCTTATTTTTTTTTTCGCTTTTTTGCAGGTCTTCGGCGGGATTGGGCGACTTTTGTAATATCACGTCGAACCCTTCTTCTTCGGCTTGGGCGGTGAGGGCATGAAAAACT‑TAAGAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAAt < 2:615948/236‑1 (MQ=255) tatTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCAc > 1:446338/1‑236 (MQ=255) aTCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCCGAGAAAAACGGATTACCCGCCGTAGTTTTTGTCGAACGGGTTGAAATCACCATa > 2:139456/1‑235 (MQ=255) aTCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATa > 1:81831/1‑235 (MQ=255) cGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGCGAAAAACGGATTACCCCTCGTAAGTTTGGTCGAACGGGTACAAATTACCATCATg > 2:389877/1‑236 (MQ=255) aaaaTGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGTAAACAGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCAGCATAAAGGCATCAAAAacc > 2:436183/1‑236 (MQ=255) tGGCGAACTTGATCATAATAATCCTTTTAA‑TCATTTTCTGCTTTATTTGGCTTTCGTTTTTGTGAAGTTTTTCGGGCGGTTTGTGCGACTTTTAAAATCTCACGTCAAAACCTTCTTCTTCAGCTTGGGGGGTGATGGCATGAAAAACT‑ACAAAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAgcgcg < 2:446338/236‑1 (MQ=255) cATAATAATGCCTTTAC‑TCATTTTCGGTTTAGTTTTGCTTCCGCTTTTTTGCAGATCTTCGGCCGTTTTGTGCGACTTTTGTAATATCACGTCAAACCCTTCTTCTTCAGCTTTGGCGGTGATGGCATGAAAAACT‑TCAGAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGt < 2:81831/236‑1 (MQ=255) tGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCt > 1:454154/1‑234 (MQ=255) tGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAACTTGTTTGGCt > 1:360321/1‑234 (MQ=255) tGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCCGGCCAGCTTGTTTGGCt > 1:9574/1‑234 (MQ=255) ccTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATTACCATAATGGCATCAAAAACCGAAAAGGGCAGCCGGCGGGCCACATGGTTTGGCt > 2:682977/1‑232 (MQ=255) ttAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTg > 1:405466/1‑236 (MQ=255) ttttCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAAttct > 1:20640/1‑236 (MQ=255) tttCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGGAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAAttctt > 1:212591/1‑236 (MQ=255) gCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACttttt > 1:504331/1‑236 (MQ=255) ctGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCgggggg > 1:429584/1‑234 (MQ=255) gATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCGGTAACACCTTTTCGCCG‑GCTTCCGGGGAGATATTa > 2:679496/1‑236 (MQ=255) gATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTa > 1:552556/1‑236 (MQ=255) ttggtgCGCCGTTTGTAATATCACGTCAAAACCTTCGTCTTCAGCTTTGGCGGTGATGGAATGCAAATCT‑TCAAAGAAAAGCGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAg < 1:679496/233‑1 (MQ=255) tggggagACGTTTGAAATAACCCGTCGAACCCTGTTTCTGAAGTTTTGGCGGGGATGGCAGGAAAACCT‑ACAGAAAAAAAGGGTATACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAg < 1:99754/229‑1 (MQ=255) tgCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGGGCGCGGGCCAGCTTGTTTGGCTGATACTGGAATTCTTCAATGGCCCGTAACAATTTTTC‑CGCGGCTTCCTGGGTGGCATTAg > 2:666619/1‑232 (MQ=255) tAATACCACGTCGAACCCTTCTTCTCCAGCTTTGGCTGTTATGGCATGAAAAACT‑TCAGAAAAAAACGAATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGc < 1:252238/235‑1 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTTGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTg > 1:223397/1‑160 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGCGATATTAGTTTGCTTATTCAGCACGCGTGAt > 1:465518/1‑236 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGAt > 1:278768/1‑236 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGAt > 1:491251/1‑236 (MQ=255) gTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCTC‑GCTTCCGGGGTGATATTCGTTTGCTTATTCAGAACGCGTGATa > 2:489590/1‑236 (MQ=255) aaaCCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATAtt > 1:697383/1‑206 (MQ=255) aaaCCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGt > 2:428388/1‑236 (MQ=255) cttaAGTTTGGGGGGTAATGGAAGGAAAACCT‑TAAGAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGAt < 1:71865/236‑1 (MQ=255) cgacAGCTGTGGGAGTAATGGAATG‑AAAACTCTCAGAAAAAAACGGATCCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGAt < 2:449955/233‑1 (MQ=255) tcagttgcggCTGTGATAGCATGAAAAACT‑GAGAAGAAAACCGTATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATAc < 2:219254/228‑1 (MQ=255) cAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATAc > 1:449955/1‑235 (MQ=255) aGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGAt > 1:160080/1‑232 (MQ=255) tttGGAGGTGATGGAATGCAAACCT‑ACAGAAAAAACGGGATACCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTg < 1:666619/236‑1 (MQ=255) ggCTGTGAGGCCATGAAAAGCT‑ACAAAAAAAAACAGTTTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCCCCATAATGGCATCAAAACCCGAAGAGGTCAGCGGGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCa < 1:19/235‑1 (MQ=255) gATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACCCCAATTCTTCa > 1:610346/1‑139 (MQ=255) gacATGCAAAACT‑TCAGAAAAAACCGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 1:139456/233‑1 (MQ=255) aaaactctcaagaaAAAACCGATTTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAAGCACCATCATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATc < 2:429584/225‑1 (MQ=255) aaaaCT‑ACAGAAAAAAGCGGTTTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATa < 1:389877/236‑1 (MQ=255) aaCT‑TCAGAAAAAACCGGTTGACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATaaa < 2:491251/236‑1 (MQ=255) | GGCATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCA‑TCCGCTGGCGAAC‑TGAGCATAATAATGCCTTTAA‑TCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAACT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGC‑GCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAA > NC_000913/1383488‑1383948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |