| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 954,388 | 0 | C | T | 31.5% | 60.2 / 17.6 | 56 | A27T (GCA→ACA) | focA | formate channel |
| Reads supporting (aligned to +/- strand): ref base C (29/8); new base T (0/17); total (30/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.29e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.52e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATGCGCCCACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAATATTTGATTATCCAAAT > NC_000913/954152‑954615 | gATGCGCCCACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCt < 2:687401/238‑1 (MQ=255)gATGCGCCCACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCt < 2:886346/238‑1 (MQ=255) gcgcCCACTCGTCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCCGATAGAAAGGCTTAAGCGG‑ATGTTTCGTTGCTTtat > 1:979170/1‑239 (MQ=255) cccACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTTTAg > 1:818836/1‑238 (MQ=255) ccACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCt < 1:841478/231‑1 (MQ=255) tAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCCGAAAGAAAAGCTTAAACGG‑ATGGTTCGTTGCTTTATAGa‑aac > 2:841478/1‑231 (MQ=255) cacGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGc > 1:241721/1‑237 (MQ=255) ggTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCTCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGCGATGAAA‑ACACCGGCGGTAAACGCCAGATAGAAAGGCTTAAGCGG‑ATGTTTCGTTGCTTTTTAGA‑CACCCGCCCCTTCTGTCACTTTGGCCAtt > 1:697022/1‑238 (MQ=255) ggTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑AACCCGCCCTTTCGGGCACCTTGGCCAtt > 1:608561/1‑238 (MQ=255) gTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGAAAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTgc > 2:725721/1‑239 (MQ=255) tGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTTGCCCTTgca > 1:45795/1‑239 (MQ=255) aaGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGGAATCGCCAGATAGAAAGTCTTAAATGG‑ATGTTTTGTTGGTTTATAGA‑CACCCGCCTCTTCTGCCCCTTTGGGCATTgccgtc > 1:69207/1‑235 (MQ=255) taaaaGAGCGCGCCCCCGAAAACAACACAAAGAATCAGCCCCAGAGAAAAAAAAATG‑CCGCCAACCATTTTTG‑CCATGCCGGGGGACATGGT‑CCTGGGCCAGGTGGTTGCGGTAAAAAAGAAGACGAATGCAATGGGAATAAAA‑CCACCGGCGGTAATCGCCAAAAAAAAAGTCTTAGGGGA‑ATTTTTCGTTGTTTTAGAAA‑CCCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAgg < 2:611732/237‑1 (MQ=255) aaGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAACGG‑GTGTTTCGTTGCTTTATAGA‑CACCCCCCCCTTCGGCCACTTTGGCCCTTGCAGCAGGAAg > 1:44759/1‑239 (MQ=255) gagaTCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGGCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCCCTTCGGCCACTTTGGGCATTGCAGGAGGAAGTa > 2:528974/1‑239 (MQ=255) ccccGCAAACAACAAAAAGAACCAGCCCAGGGAAGAAG‑AAATGCCCGCCAACCTGTTTCG‑CCTAGCCGAGGGGATTTGTCCCTGCCCCA‑GTGGTTGTTGAAATAAAAAAGACAAATGCGATTGAGAAAAAA‑CCCCCGGCGTAAACCGCCAGAAAAAAATTTTAAAGGGG‑TTTTTTCGTTGTTAAAAAAC‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTaaaa < 2:710434/232‑1 (MQ=255) cAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATGGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCCGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCTGCCACTTTGGCCCTTGCAGCAGGAAGTAAAAGa > 1:938153/1‑231 (MQ=255) cAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATTCCCAGATNGAAAGGCTTAAGCGG‑CTGGTTCGTTGCTTTAAAGA‑CACCCGcc > 1:477354/1‑175 (MQ=255) ccccAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTTCAGCAGGAAGTAAAAGATAAAAAGGGTTGTCAGATTTCACACTaa > 2:635524/1‑239 (MQ=255) cccAGAGAGAAGCAAATC‑CCGCAAACCAGTTTTG‑CCATGCGGAAGGCCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑CCCCCGGCGGTAATCGCCAGATAGAAAGTCTAAAGCGG‑ATGTTTCTTTGTTTTATAGC‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCacac < 1:840157/235‑1 (MQ=255) ccaagagagAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATAAAA‑CCCCCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCttt < 1:821601/227‑1 (MQ=255) aagcagccg‑ccgccAA‑CTGTTTTGCCCATGCAGAGGGCGATTGGGCCGGGGCCG‑GGGGTGGTTGTAAGAAAAAAGACGAAGGCGATTGAGAGAAAA‑ACCCGGGCGTTAACCGCCAAAAAAAAAGTCTAAGGCGG‑TTTTTTCTTTGTTTTAAAGA‑CCCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCtt < 2:632438/230‑1 (MQ=255) aaGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTa > 1:381533/1‑228 (MQ=255) aaGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGGAAAAGATCAAAAAGGTTGTCAGCTTTCACACTa > 1:580065/1‑228 (MQ=255) aGCAAATG‑CCGCCACCCAGTTTGC‑CAAGGCGGAAGGGCTTGGGGCTTGTGCAG‑GGGGTGGCTGTAAAAAAAAAGACGAAGGCGATGGAGATAAAA‑CCCCCGGCGGTAATCCCCAGATAGAAATTCTTAAGGGG‑ATTTTTCGTTGTTTTATAGA‑CCCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAActctc < 2:608561/233‑1 (MQ=255) cAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATGTAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGGAATCGCCAAGTAAAAAATCTTAAACGG‑AAGTTTCCTTGCTTTATAGA‑CACACGCCTCTTCGGCCACTTTGGTCATTGCCGCAGGAAGAAAAAGATCAAAAAGGGTGTCAGGttttcaacttaatc > 2:926595/1‑218 (MQ=255) gtttccccAGGCCAAAGGGAATTGTCCCTGTGCCG‑GTGTTTGCTGTAATAAAAAAGCCGAATGCGTTTGAGATGAAA‑ACCCCGGCGGTAACCGCCAGATAAAAAGTCTTAAGCGG‑TTGTTTCGTTGTTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGAt < 1:560731/233‑1 (MQ=255) cATGCCGAGGGGCATTGGGCCTGGCCAA‑GGGGTGGGTGTAATAAAGAAGAGGAAGGCGATGGAGAAAAAA‑CCCCCGGCGATAACCGCAAAGAAAAAAGTCTTAGGCGG‑TTGTTTCGTTGCTTTATAGA‑CCCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACa < 2:241721/239‑1 (MQ=255) cATGCCGAAGGTCATTGGGCCTGTGCCA‑GTGGTTGCTGTGATAAAAAAGACGAATGCGTTTGAGATAAAA‑CCCCCGGCGTTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTTTTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACa < 1:528974/239‑1 (MQ=255) acGAAGGACTTTGTGCCGGTGAGA‑GGTGTTTGTATGATATAAAAAAAGAATGCTATTGAGATAAAA‑CCCCCGGCTGTAACCCCCAGATAGAAAGTCTTAAGGGG‑ATTTTGCTTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACa < 2:39132/234‑1 (MQ=255) ttGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGACAGAAAGTCTTAAGCGG‑ATTTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGGCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATg > 1:707012/1‑239 (MQ=255) gcttgtgcagttGGTTGTGGTAATATAAAAGAGGAAGGGGATGGAGATAAAA‑CCACCGGCGGTAACCGCAAGAAAAAAAGTCTAAGGCGG‑ATTTTTCGTTGTTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATgaga < 2:979170/227‑1 (MQ=255) cggtgccA‑GTGGTTGCTGTGATATAGAAGACGAAGGCGATTGAGATGAAA‑CCCCCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑TTTTTTCTTTGTTTTATAGA‑CCCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGaaa < 1:725721/236‑1 (MQ=255) gtttgttttaatatAGATGACAAATGCGATTGAG‑TGAAAGTCCCCGGCGGTATTCCCCAGATGAAAAGTCTTAGGCGG‑ATTTTTGTTTGTTTAATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGAt < 1:898266/229‑1 (MQ=255) tttgcgtggATATAAAAGAGGAGTGAGATTGAGATAAAA‑ACACCGGCGGTAATCGCAAGATAAAAATTTTAAAGGGG‑ATGTTTCGTTGTTTAATAGA‑CCCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGAt < 2:485530/230‑1 (MQ=255) gCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGGGG‑GTGTTTTCTTGCTTTTTAGA‑CACCCGCCCCTTCCGCCCATTTGGCCATTGCAGCCGGAAGTAAAAGATCAAAAGGGGTTTCAGCTTTTCCACTTACTCTCTCTTTATTAATTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATCAATCata > 2:973476/1‑239 (MQ=255) ttgagATATAGAAAACAAATGCGATTGAAATGAAA‑ACCCCGGGGGAAATCGCCAGAAAAAAAGTCTAAAGGGT‑TTTTTTGGTTTCTTTAAAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAAct < 2:119996/166‑1 (MQ=255) tgtgATAAAGAAGACGAATGCGATTGAAATAAAA‑CCCCCGGCGGTAATCGCAAGATAGAAAGTTTTAAGGGT‑ATGTTTCTTTGTTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCatat < 1:802953/238‑1 (MQ=255) ggagATATAGAAGTAAAGTGCGATGGAGAAAAAA‑ACCCCGGGGGAAATCGCAAGAAAGAAACTGTAAAGGGG‑TTGTTGTGTTGTTGAAAAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCatat < 2:32595/235‑1 (MQ=255) taatatAGAAGACGAATGCGATTGAGATGAAA‑CCCCGGGCGGTAATCGCAAGATAGAAAGTCTAAGGCGG‑ATGTTTGGTTGTTTTATAGA‑CCCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACa < 1:618540/199‑1 (MQ=255) aaaaagaGGATTGCGTTTGGAATAAAA‑ACCCCGCCGGTAAGCGCCAGATAAAAAGTTTTAAGGGG‑TTGTTTCTTTGTTTTAAAGA‑ACCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATga < 2:812286/208‑1 (MQ=255) gaagaCGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTttat > 1:119996/1‑170 (MQ=255) gaCGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCCGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCg > 1:32595/1‑230 (MQ=255) gaCGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTta > 1:401390/1‑239 (MQ=255) gaCGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGGCTTAAGCGG‑AAGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGGTGTCAGCTTTCACACTTACTCTCTCTTTATTAAATCGGCGACGAGATTCTAACAAAACATtata > 2:618540/1‑201 (MQ=255) aTGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGata > 1:812286/1‑211 (MQ=255) aTTGAGATGAAT‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CCCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTTGCCTGGCTTATAGGCCCGTa > 1:997440/1‑239 (MQ=255) tgTAATCGCAAGATAG‑AAGTGATAAGGGGAAGGTTTCG‑TGTTTTTAAGACCACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCCCACTAACTCTCTCTTTATTAAGGCGGCGACGAGATACTAACAAAGCAGTATAGATGAGAAATTGATATAGAGCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCAAGGTTTTTATGc < 1:973476/237‑1 (MQ=255) aTCCCCAGTTAGAAAGTCTTAAGCGG‑ATTTTTGTTTCTTTTAAAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATa < 1:926595/239‑1 (MQ=255) aGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATtata > 1:669990/1‑153 (MQ=255) ttttaagggtttGTTTTTTTGATTTAAACA‑CCCCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAATATTTGa < 2:580065/228‑1 (MQ=255) ttAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAatat > 1:175818/1‑233 (MQ=255) ttAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAATATTTGAtt > 1:923712/1‑239 (MQ=255) aTGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCAt > 2:160704/1‑197 (MQ=255) aTGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCAt < 1:160704/197‑1 (MQ=255) aTGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAATATTTGATTATCCaaat > 2:529454/1‑239 (MQ=255) | GATGCGCCCACTCGCCTTAGCAACAACAATCAACACGGTGGAAGTAAAGAGATCGGCTCCGCAGACAACACAAAGAATCAGCCCCAGAGAGAAGCAAATG‑CCGCCAACCAGTTTTG‑CCATGCCGAAGGGCATTGTGCCTGTGCCA‑GTGGTTGCTGTGATATAGAAGACGAATGCGATTGAGATGAAA‑ACACCGGCGGTAATCGCCAGATAGAAAGTCTTAAGCGG‑ATGTTTCGTTGCTTTATAGA‑CACCCGCCTCTTCGGCCACTTTGGCCATTGCAGCAGGAAGTAAAAGATCAAAAGGGTTGTCAGCTTTCACACTAACTCTCTCTTTATTAAGTCGGCGACGAGATACTAACAAAGCATTATAGATGAGAAATTGATATAGATCATATCTCGCCTGGCTTATAGGCCCGTAACTCGCATGGTTTTTATGCAAATACGGAGTAAATATTTGATTATCCAAAT > NC_000913/954152‑954615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |