Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,862,664	0	C	G	37.0%	15.4 / 17.8	50	pseudogene (940/1617 nt)	glvC	pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component
Reads supporting (aligned to +/- strand):  ref base C (21/8);  new base G (3/14);  total (26/24)
Fisher's exact test for biased strand distribution p-value = 5.80e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-02
Rejected as consensus: Frequency below/above cutoff threshold.

ATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑GGTT‑GCGGG‑AATCAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGT  >  NC_000913/3862429‑3862897                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                  gccctgggcggggTCGGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GTAA‑GGTT‑GCggg                                                                                                                                                                                                                                                >  1:576201/11‑239 (MQ=255)  tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑GGCT‑TCgggg                                                                                                                                                                                                                                               >  1:208560/1‑238 (MQ=255)  tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑AGGT‑GCGGG‑a                                                                                                                                                                                                                                              >  1:957876/1‑239 (MQ=255)        tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GGCTAAA‑GGTT‑CGGGG‑aaccgc                                                                                                                                                                                                                                         >  2:1011111/1‑235 (MQ=255)                            gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GTAA‑GGGT‑TGGGG‑AAACAGCGAG‑CCCGCCCCCTTTA‑ACCg                                                                                                                                                                                                                  >  2:222021/1‑239 (MQ=255)                             cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑GGGT‑GCGGG‑GAACAGCAAA‑CCCCCCACTTTTA‑ccc                                                                                                                                                                                                                   >  1:282506/1‑237 (MQ=255)                                 gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GTAA‑AGAT‑GCGGG‑AATAAGAAAA‑CCCGCCACTTTTT‑CCCCGtttt                                                                                                                                                                                                             >  1:1018197/1‑239 (MQ=255)                                          cgtggggtcccAGTTTGGCGGAAAACTCTAGACAAGCACACCACCCCCGTTTTCGCCCACCACAGAAAAGAAAAACGTAACGGGCGACATGGAGGCCGCCAGCAGGGCGTGCACCAAAAACAGCAGGGGTAAAAGGAAGAGGAAGAAAAATCCCG‑GGGGTTCGGTAATCCCCACCAGGTGGGG‑GT‑TTAG‑GGGG‑GGGGG‑AACCAGCAAC‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCgg                                                                                                                                                                                                    <  2:282506/230‑1 (MQ=255)                                                                                     ccGCCAATGTTCCCCACACCACAAAAGAAAAACATTGCGGCCGAAATTGAGGCCGCCGGCACGGCGTGTACCACAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCG‑GCGGTTCGGTAATCCCCCCCAGCA‑GGG‑GG‑TTAA‑GGGT‑GGGGGAAATCAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCgg                                                                                                                                                                                                    <  2:236472/196‑1 (MQ=255)                                                                                           atgtcccccACCACCCAAAAGAAATACATTCCGGCCAACATGGGGCCCCCCAGCCCGGCGTCCCCCGCAAACAGCAACGGGAAAATGAACAGAAAGGTAAATCCCA‑GCGTTCCGTTATTCCCCCCCAGCA‑GGG‑GG‑TTAAGGGTT‑GGGGA‑AATAAGAAAC‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTa                                                                                                                                                                                         <  2:214413/194‑1 (MQ=255)                                                                                           aTGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑GGGT‑GCGGG‑GATCAGCAAA‑ACCCCCCCCTTTT‑CCCCCTTTTCCGGGGCGGGCG‑GGAAAGAC‑AACG‑CTAAAGAAAAACCCACCGGA‑CC‑AAAAAatttttt                                                                                                                                              >  2:317404/1‑237 (MQ=255)                                                                                               tGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GTAA‑AGGT‑GCGGG‑GAACAGCCAG‑CCCGCCCCCTTTA‑CCCGATTTTTCGGGGCGGCAG‑TGGAgga                                                                                                                                                                                         >  1:236472/1‑194 (MQ=255)                                                                                                gCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCCACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TTTA‑GGTT‑‑CGGG‑GGACCGCCAA‑CCCCCCACTTTTT‑CCCCCTTTTTCCGGGCGGCCG‑GGGAGGACAACCC‑CTAAAAAAATCCCCCCGGCC‑CC‑AAAAAttttttggta                                                                                                                                           >  2:172302/1‑233 (MQ=255)                                                                                                     ccacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑GGGT‑GCGGG‑GAACAGCAAA‑CCCCCCACCTTTA‑CCCGATTTTTCCGGGCGGCAG‑GGAAGGAA‑AACG‑CCaaa                                                                                                                                                                             >  1:214413/1‑200 (MQ=255)                                                                                                        caccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑AGTT‑GTGGG‑AAGAAGCGAG‑CCCCCCCCCTTTT‑CCCGGGTTTTCGGTGCGGCAG‑GGAAGTAC‑AACG‑CCAAACAAATAACCACGGGC‑CC‑CAAGATTTTTTAGTTACCGTGccac                                                                                                                                 >  2:783771/1‑236 (MQ=255)                                                                                                                   tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGAGAACCGCAAACAGCAACGGAGAAATGAACAGGAAGGCAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TGTA‑GGGA‑TCGGG‑AAACACCAAG‑GCCGCCACCTTTA‑ACCGCTTGTCTCGGGCGGGGG‑AGAAATACAATGA‑CAAAAAAAATGCCTAGGTCA‑CA‑ACAGCTTTTT‑AGGTACCGTGTCAGGCaaaaaat                                                                                                                        >  2:536223/1‑234 (MQ=255)                                                                                                                     cATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑AGGT‑GCGGG‑GAACAGCAAG‑CCCGCCCCCTTTA‑CCCGCATTTCCCGGGCGGCAG‑GGAAGTAC‑ATCG‑CTAAAAAAAAGCCCACCGCA‑CC‑AAAAAATTTTTAGGTAACGCGCAGGGGAAAAACGCCt                                                                                                                     >  1:678/1‑238 (MQ=255)                                                                                                                          cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑GGTT‑GCGGG‑GATCAGCAAG‑CCCGCCCCTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAAAGCCCACCGCA‑CC‑AAAGAATTTTGAGTTACCGTGCAGGGCAAAACCGCCCTCCcgg                                                                                                               >  1:111066/1‑239 (MQ=255)                                                                                                                          cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GTAA‑GGGT‑TCGGG‑GAACAGCAAGCCCCCCCCCTTTTA‑CCC‑ATTTTTCGGTGCGGGAGCGGAAGACA‑ACCG‑CTAAA‑AAAAGCCCCCCGCA‑CCAAAAGATTTTTTATTTACGGTCGGGGGACAAACGCCCTTCCgg                                                                                                                >  2:349646/1‑239 (MQ=255)                                                                                                                          cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCAAGGC‑GG‑TTAA‑AGTT‑GCGGG‑AATCAACAAG‑CCCCCCCCCTTTT‑CCCCGTTTTTCGGTGGGGGAG‑AGGAGGAA‑ATCG‑CTCAAGAAAATGCCACGGCG‑AC‑AAAGATATTTTAGGTAACGTGCAGGGCCAAAAAGCCCTccccg                                                                                                               >  2:465469/1‑236 (MQ=255)                                                                                                                             tCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACCGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAAGGGTT‑GCGGG‑AAACGCAAAG‑CCCCCCCCTTTT‑‑CCCGGTTTTTCCGTGCGGCCG‑GGGAGTAC‑AACC‑CTAAAAAAATACCCCCCGCC‑CC‑CAAGAATTTTTAGTTACCCTGGAGGGCAAAAACGCCTTCCCCGaac                                                                                                            >  2:921200/1‑239 (MQ=255)                                                                                                                             tCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TAAA‑GGTT‑GGGGG‑AA‑AAACAAA‑CCCCCCCCCTTTA‑CCCCGTTTTTCGGTGGGGGCG‑GGGAGGAA‑AACGCCTAAAAAAAACCCACCGCCC‑CC‑AAAGATTTTTAGGTTACGCGCCGGGGCAAACCCCCCTCCCGGGac                                                                                                             >  2:583944/1‑238 (MQ=255)                                                                                                                                aCATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCCGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑AGGT‑GCGGG‑GAACAGCAAG‑CCCCCCACTTTTA‑CCCGATTTTTCGGTGCGGCAG‑TGAAGGAC‑AACG‑CCAAAAAAAAGCCCACGGCA‑CC‑CAAGATTTTTTAGTTACCGTGCAGGGCaaaaac                                                                                                                         >  1:937956/1‑221 (MQ=255)                                                                                                                                           gccAGCACGGCGTGTCCCGCAAACAGCAAGGGTAAAATGAACAGGAAGGTAAATCCCA‑GCGGTTCGGTAATCCCCCCCAGCAGGGC‑GG‑TTAA‑GGTT‑GGGGG‑AATCAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTa                                                                                                                                          <  1:481297/195‑1 (MQ=255)                                                                                                                                                cACGGCGTGTACCGCAAACAGAAACGGTAAAATGAACAGGAAGGTAAATCCCA‑GCGTTTCGGTAATCCCCCCCAGCGTGGC‑GG‑TTAA‑GGTT‑GGGGA‑AATCAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGaa                                                                                                                                                                          <  1:913278/160‑1 (MQ=255)                                                                                                                                                    gCGTGTCCCAAAAACAGCAAGGGAGAAAAGAACAGGAAGGTAAATCCCG‑GCGGTGCGGTAATCCCCACCAGCAGGGC‑TG‑TTAA‑GGTG‑GCGGG‑AATCAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCgg                                                                                         <  1:1011111/235‑1 (MQ=255)                                                                                                                                                     ggtgacccaaaaaaAGAAAGGGTAAAAGGAAAA‑GAAGGGAAATTCCAGGCGTTCCGGAATTTCCCCCCAGCAGGGC‑GG‑TTAA‑GGTG‑GGGGG‑AATCAGAAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGACAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGaaca                                                                                                           <  1:563612/206‑1 (MQ=255)                                                                                                                                                     cGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GTAA‑AGGT‑TCGGG‑GAAAAACAAA‑CCCGCCCCCTTTA‑ACCGGTTTTTCCGTGGGGCAG‑TGAAGGAA‑ATCG‑CCAAAGAAATACCCCCCGCACCC‑AAAAATTTTTGATTAACCggtcggg                                                                                                                                 >  2:481297/1‑189 (MQ=255)                                                                                                                                                         tACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GTAA‑GGGT‑GCGGG‑GAACAGGAAA‑ACCCCCCCTTTTACCCCGATTTT‑CGGGGCGGGAG‑GGAAGGAC‑AACC‑CCAAAAAAAAGCCCCCCCCC‑CC‑CACGAATTTTTGGGTAGCCTGCAGGGGAAAAAAGCCCTCCCGGGACAACCCTTTCTAGGGCTCCGCGCGCaaaa                                                                                >  2:417287/1‑238 (MQ=255)                                                                                                                                                         aaCCGCAAACAGGAGCGGAAAAAAGAACAGGAAGGTAACTTCCC‑GATGTACGGTATTCCCCACCGTCTCGGC‑GT‑TGCG‑GGGG‑GGGAG‑AAGCGTAACG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGc                                                                                                                                                                                                      <  2:633256/125‑1 (MQ=255)                                                                                                                                                               aaaCAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑AGGT‑GTGGG‑AATCAGCAAG‑CCCCCCACTTTTA‑CCCGATTTTTCGGGGGGGCAG‑GGAAGTAA‑AACG‑CCAAAAAAAATCCCACGGCC‑CC‑AAAGATTTTTTAGTTAACGGGCAGGGGAAAACCCCCCTCCGGGAAAAAAGATTTTAg                                                                                                 >  2:563612/1‑216 (MQ=255)                                                                                                                                                                   aGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTTA‑GGTT‑GCGGG‑GATCCGCAAT‑ACCGCCACTTTTA‑CCCGCTTTTCCCGTGCGGCAG‑TGAAg                                                                                                                                                                                           >  1:633256/1‑126 (MQ=255)                                                                                                                                                                      aaggggaaaaGGAACAGGAAGGTAAATCCCA‑GCGTTTCGGTAATCCCCCCCAGCATGGG‑GG‑TTAA‑GGTG‑GGGGA‑AATCAGCACG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTg                                                                      <  1:717555/229‑1 (MQ=255)                                                                                                                                                                                tGAAGAGGAAGGAAATTCCCG‑GCGTTTCGGTAATCCCCCCCAGCATGGG‑GG‑TTAA‑GTTG‑GCGGG‑AATCACCACG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc                                                         <  1:665828/239‑1 (MQ=255)                                                                                                                                                                                tGAACGGGAAAGAAATTTCCG‑GGTGTTTGGTTATCCCCCCCAGCATGGC‑TG‑TTAG‑GGTT‑GCGGA‑AACCAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc                                                         <  1:536223/239‑1 (MQ=255)                                                                                                                                                                                tGAACGAGAAGGAAAATTCCA‑GGGTTTCGGTAATCCCCACCAGCGTGGG‑GG‑TAAA‑GGTG‑GAGGA‑AATCACCAAA‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc                                                         <  1:692211/239‑1 (MQ=255)                                                                                                                                                                                       gAAGGTAAATCCCA‑GCGGTTCGTTAATCCCCCCCGGCTTGGG‑GG‑TT‑A‑GGTT‑GGGGGAAATCAGCACC‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTa                                                    <  1:300921/237‑1 (MQ=255)                                                                                                                                                                                        aaGGTAAATTCCA‑GCGTTTCGTTAATTCCCACCATCTTGGC‑GT‑TTAG‑GGTT‑GCGGG‑AATCAGAAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc                                                         <  1:125169/231‑1 (MQ=255)                                                                                                                                                                                            tAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑GGTT‑GCGGG‑AATCAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑AGAAGAAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCAGCTCCGCGCTCAAACTGAACTCCTGCAGAAGCTGCGCCCAGTACATCTGa                                             >  1:723256/1‑239 (MQ=255)                                                                                                                                                                                               tgtCCG‑GCGGTGCGTTAATCCCCACCAGCTGGGC‑GT‑TAAG‑GGGT‑GGGGG‑ACTAAAAAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATg                                          <  1:694836/237‑1 (MQ=255)                                                                                                                                                                                                tcccA‑GCGTTTCGATACTCCCCCCCAGCAGGGC‑GG‑TTAG‑GGGG‑GCGGG‑AATCAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATgc                                         <  2:576201/237‑1 (MQ=255)                                                                                                                                                                                                      gCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑GGGT‑GCGGG‑AAACAGCCAA‑CCCCCCCCCTTTT‑CCCCA‑TTTCCCGTGCGGGAG‑GGGAGGAC‑ATCC‑CTCAAAAAAAGCCCACCGCC‑CC‑AAAAATTTTTTAGTTACCCTGCAGGGCAAAACCGCCCTCCCGGAACAACGATTTTAGCGGCCCCGCGCCCCAACAGAACACCTCTCGAAGCTGCGCCCCGCAAATCTCAATGCCCCCt                                    >  2:1024254/1‑238 (MQ=255)                                                                                                                                                                                                                      ccccaGCATGGC‑GG‑TTAA‑GGTT‑GCGGG‑AATAAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                    <  1:926383/237‑1 (MQ=255)                                                                                                                                                                                                                      ccccaGCAGGGC‑GG‑TTAA‑GGTG‑GGGGG‑AACAAGAAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                    <  1:172302/237‑1 (MQ=255)                                                                                                                                                                                                                      ccccaGAATGGG‑GG‑TTGA‑TGTC‑GAGGG‑ATACACCAGC‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                    <  1:727156/237‑1 (MQ=255)                                                                                                                                                                                                                      caccggcggggC‑GG‑TTAG‑GGTG‑GCGGA‑AATCAGAAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                    <  1:80671/230‑1 (MQ=255)                                                                                                                                                                                                                                 gggg‑TTAG‑GGTG‑GGGGA‑AACCACCAAC‑CCCGCCACTTTTA‑CCCGA‑TTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAGATGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa          <  1:1024254/236‑1 (MQ=255)                                                                                                                                                                                                                                  ggg‑TTAA‑GGTG‑GCGGG‑AACCAGCAAC‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa          <  1:921200/237‑1 (MQ=255)                                                                                                                                                                                                                                   gg‑TTAA‑GGTTGGGGGG‑AAACAAAAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa          <  1:349646/238‑1 (MQ=255)                                                                                                                                                                                                                                     gtgga‑GGTT‑GGGGA‑AAACGACAAC‑CCCGACACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGGCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGGAAAACCGCCTGCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACt        <  1:77092/234‑1 (MQ=255)                                                                                                                                                                                                                                             gtcccGGA‑AATCAACAAC‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCCCGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGt  <  2:208560/234‑1 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                  ATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAA‑GGTT‑GCGGG‑AATCAGCAAG‑CCCGCCACTTTTA‑CCCGATTTTCCGGTGCGGCAG‑TGAAGTAC‑ATCG‑CTAAAGAAATGCCCACGGCA‑CC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGT  >  NC_000913/3862429‑3862897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑