Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,520,5041.T21.0% 754.4 / 260.4 272intergenic (‑180/+167)yjhU/yjhFputative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
Reads supporting (aligned to +/- strand):  ref base . (102/113);  new base T (35/22);  total (137/135)
Fisher's exact test for biased strand distribution p-value = 7.38e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.65e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 279 total aligned reads displayed.

TGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGA  >  NC_000913/4520406‑4520602
                                                                                                   |                                                                                                  
   ttttATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTc                                                                                                 <  1:4480650/99‑1 (MQ=255)
      tataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCgg                                                                                              <  1:3136139/99‑1 (MQ=39)
       ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGc                                                                                             <  2:3324648/99‑1 (MQ=255)
       ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGc                                                                                             >  2:1129646/1‑99 (MQ=255)
       ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGc                                                                                             <  1:4780539/99‑1 (MQ=38)
       ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGc                                                                                             <  2:162970/99‑1 (MQ=38)
       ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCGGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGc                                                                                             <  2:3041860/99‑1 (MQ=38)
        taCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATCCTGTAAAGCCGGAGACATG‑CTCCGGCt                                                                                            >  2:2150848/1‑99 (MQ=255)
        taCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCt                                                                                            >  1:2184745/1‑99 (MQ=255)
         aCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGCtt                                                                                           <  1:2372261/99‑1 (MQ=38)
          cAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCttt                                                                                          >  1:939317/1‑99 (MQ=255)
          cAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGCttt                                                                                          <  1:2266503/99‑1 (MQ=38)
           aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTa                                                                                         <  1:1465238/99‑1 (MQ=255)
           aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTa                                                                                         <  2:3512381/99‑1 (MQ=255)
              tatTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAg                                                                                      >  2:908097/1‑99 (MQ=255)
               atTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGAGATCGCCCGCTGTTCCCCCATACTATAAAGCCGGAGACATG‑CTCCGGCTTTACAGt                                                                                     >  2:1815725/1‑99 (MQ=255)
                ttttATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTa                                                                                    >  2:2506331/1‑99 (MQ=255)
                 tttATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTAt                                                                                   <  1:3200576/99‑1 (MQ=255)
                 tttATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTAt                                                                                   <  2:4764857/99‑1 (MQ=255)
                  ttATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTAtt                                                                                  >  1:1662217/1‑99 (MQ=255)
                  ttATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTAtt                                                                                  >  1:3085897/1‑99 (MQ=255)
                    aTTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTAc                                                                                >  2:1419616/1‑99 (MQ=255)
                     ttCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACt                                                                               >  2:192930/1‑99 (MQ=255)
                     ttCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACt                                                                               <  1:1736987/99‑1 (MQ=255)
                     ttCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACt                                                                               <  2:2927447/99‑1 (MQ=255)
                     ttCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACt                                                                               <  2:2825158/99‑1 (MQ=255)
                     ttCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACt                                                                               <  1:5111675/99‑1 (MQ=255)
                      tCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTg                                                                              >  1:4893055/1‑99 (MQ=255)
                      tCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTg                                                                              <  2:3628318/99‑1 (MQ=255)
                       cTTTTACATGAAATAAACCAGCATTCCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTga                                                                             <  2:3174162/99‑1 (MQ=255)
                         tttACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTgaga                                                                           >  2:2686793/1‑99 (MQ=255)
                           tACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAAt                                                                         >  1:2421974/1‑99 (MQ=255)
                            aCATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATa                                                                        >  1:55251/1‑99 (MQ=255)
                              aTGCAATAAACCAGCATAACATTTGAGCGATCGCCCGACGTTCCCCCCTACTCTAAATCCGGAGACACT‑ACGCGGCTCTACAGTACTACTCAGaactcc                                                                      >  2:4167579/1‑95 (MQ=255)
                              aTGAAATAAACCAGCATACCATTTGAGCGATCGCTCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTAATACTGAGAATaca                                                                      >  1:1940099/1‑99 (MQ=255)
                              aTGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATaca                                                                      <  1:3021256/99‑1 (MQ=255)
                              aTGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATaca                                                                      <  2:1199062/99‑1 (MQ=255)
                               tGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATacac                                                                     >  2:2611556/1‑99 (MQ=255)
                               tGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATacac                                                                     <  2:3435235/99‑1 (MQ=255)
                                gAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACAcc                                                                    >  1:2495732/1‑99 (MQ=255)
                                gAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACAcc                                                                    >  1:1087352/1‑99 (MQ=255)
                                    tAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATc                                                                <  2:1959689/99‑1 (MQ=255)
                                      aaCCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCaa                                                              >  1:1324024/1‑99 (MQ=255)
                                       aCCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAg                                                             <  1:1120077/99‑1 (MQ=255)
                                       aCCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAg                                                             >  1:4335250/1‑99 (MQ=255)
                                         cAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCa                                                           <  1:4235092/99‑1 (MQ=255)
                                             aTACCATTTGCGCGATCGCCCGCTGTTCCCACATACTGTAAAGCCGGAGACATG‑CTCCGTCTTTATAGTATTACTGAGAATACACCCATCAAGCATAAt                                                       <  2:2075867/99‑1 (MQ=255)
                                               aCCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCg                                                     >  1:2636293/1‑99 (MQ=255)
                                               aCCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTACGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATca                                                     >  2:146171/1‑98 (MQ=255)
                                                ccATTTGAGCGATCGCAGGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCTGATATACAGTAGTACTGAGAATACACCCACCAAGCATAATcca                                                    >  2:3819758/1‑97 (MQ=255)
                                                 cATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGaa                                                   <  1:3994652/99‑1 (MQ=255)
                                                 cATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGaa                                                   >  1:4070672/1‑99 (MQ=255)
                                                  aTTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAg                                                  <  1:1859319/99‑1 (MQ=255)
                                                         cGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAat                                           >  2:565130/1‑99 (MQ=255)
                                                         cGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAat                                           <  1:4535251/99‑1 (MQ=255)
                                                          gATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAata                                          >  2:4109628/1‑99 (MQ=255)
                                                           aTCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAatat                                         <  2:3062000/99‑1 (MQ=255)
                                                           aTCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAatat                                         >  2:1083991/1‑99 (MQ=255)
                                                               cccGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGcc                                     <  1:716293/99‑1 (MQ=255)
                                                                ccGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATATTGGAAGGTTCAATATCGccc                                    >  1:4858782/1‑99 (MQ=255)
                                                                    tGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCttt                                <  1:4583837/99‑1 (MQ=255)
                                                                     gTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCtttt                               >  1:4282227/1‑99 (MQ=255)
                                                                      ttCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCttttt                              <  2:4059058/99‑1 (MQ=255)
                                                                       tCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGC‑TTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGa                            <  2:330300/99‑1 (MQ=255)
                                                                        cccccATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGa                            <  1:2032239/99‑1 (MQ=255)
                                                                        cccccATACTGTAAAGCCGGAGAAATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGa                            <  2:3740036/99‑1 (MQ=255)
                                                                           ccATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACAGCCGTCAAGCATAATCGAAGGTTCAATATAGCCCCTTTTTGATCg                         >  2:4833727/1‑99 (MQ=255)
                                                                            cATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGc                        >  1:865473/1‑99 (MQ=255)
                                                                            cATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGc                        >  1:1180450/1‑99 (MQ=255)
                                                                              tACTGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCa                      >  1:954540/1‑99 (MQ=37)
                                                                               aCTGTAAAGCCGGAGACATG‑CTCCGTCTTTACAGTATGACTGCGACTACACCCATCAGTCAAAAGCGATAGTTCACGACCGCCCTTGTCGGATCGCCAg                     <  2:4510718/99‑1 (MQ=255)
                                                                               aCTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAg                     <  1:2804263/99‑1 (MQ=255)
                                                                                 tGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCg                   >  1:3360127/1‑99 (MQ=255)
                                                                                 tGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGCGAATACACCCATCAAGCATCATCGAAGGCTCAATATCGCCCCTTTTTGATCGCCAGCg                   >  1:1401697/1‑99 (MQ=25)
                                                                                 tGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCg                   >  1:4207002/1‑99 (MQ=38)
                                                                                 tGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCg                   >  1:395648/1‑99 (MQ=38)
                                                                                 tGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTGCTTGATCGCCAGCg                   >  2:5042633/1‑99 (MQ=37)
                                                                                 tGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCAAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCg                   >  2:619401/1‑99 (MQ=37)
                                                                                  gTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGa                  >  1:4602840/1‑99 (MQ=38)
                                                                                  gTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATAAACACATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGa                  >  1:3910331/1‑99 (MQ=37)
                                                                                   tAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAt                 >  2:971387/1‑99 (MQ=255)
                                                                                   tAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAt                 >  2:42932/1‑99 (MQ=255)
                                                                                   tAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTGCAATATCGCCCCTTTTTGATCGCCAGCGAt                 >  1:4938585/1‑99 (MQ=255)
                                                                                    aaaGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAtt                >  2:2598023/1‑99 (MQ=255)
                                                                                    aaaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCAAAGGTTCAATATCGCCCCTTTTTGCTCGCCAGCGAtt                >  2:4617173/1‑99 (MQ=37)
                                                                                     aaGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc               <  2:2454429/99‑1 (MQ=255)
                                                                                     aaGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc               <  2:3682380/99‑1 (MQ=255)
                                                                                     aaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTTATCGCCTGCGATTc               >  2:1322819/1‑99 (MQ=37)
                                                                                     aaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc               >  2:2320648/1‑99 (MQ=38)
                                                                                     aaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc               >  1:2960869/1‑99 (MQ=38)
                                                                                      aGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCCGCGATTCg              >  2:4327056/1‑99 (MQ=38)
                                                                                       gCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAACATCCCCCCTTCTTGATCGCCAGCGATTCGt             >  2:3566739/1‑99 (MQ=255)
                                                                                        ccGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTc            >  1:2876356/1‑99 (MQ=255)
                                                                                          ggAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCAc          >  2:4458042/1‑99 (MQ=255)
                                                                                           gagaCATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGACAcc         >  1:4653977/1‑99 (MQ=255)
                                                                                            agaCATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCg        <  1:2549965/99‑1 (MQ=255)
                                                                                                aTG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCa    >  1:3900485/1‑99 (MQ=255)
                                                                                                aTG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCa    <  1:3759471/99‑1 (MQ=255)
                                                                                                  g‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGa  >  2:1506260/1‑99 (MQ=255)
                                                                                                  g‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGa  >  1:840965/1‑99 (MQ=255)
                                                                                                   |                                                                                                  
TGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGA  >  NC_000913/4520406‑4520602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑