| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,577,123 | 0 | A | C | 26.9% | 192.4 / 10.4 | 78 | V166G (GTA→GGA) | yddB | putative TonB‑dependent outer membrane receptor |
| Reads supporting (aligned to +/- strand): ref base A (42/15); new base C (0/21); total (42/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGAGTTCCTGATTAAACGACAAGGTATAAAAGTTCTTTTTAAAATCTGGGGAGTAATAAG‑TACTTCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACCGTGAATAGAGATTTTCTCAGGGCGAATA > NC_000913/1576923‑1577356 | cGAGTTCCTGATTAAACGACAAGGTATAAAAGTTCTTTTTAAAATCTGGGGAGTAATAAG‑TACTTCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACaaa > 2:1118173/1‑238 (MQ=255) agtttctagATTAAAGGA‑AAGGTTAAAAAGTTTGTTTTAAAAAGCGGGGAGGTATAAGTTATTTCCGAAGGATCTTGGTTTAAAGGCGCTTTTGTTATTCC‑CACCAATTGGC‑GA‑TGTTACCCCGCCCAACCGCGTG‑GTTCGATAA‑CCAAATTCCCCCTTCCTATCATCGGCGTTGAAGG‑TTTGGATCTTTGAAAAAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACaaaa < 2:201446/230‑1 (MQ=255) ttCCTGATTAAACGACAAGGTATAAAAGTTCTTTTTAAAATCTGGGGAGTAATAAG‑TACTTCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACaaa > 1:332368/1‑234 (MQ=255) aTTAAACGACAAGGTATAAAAGTTCTTTTTAAAATCTGGGGAGTAATAAG‑TACTTCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGTCACAAAACTGACATaa > 2:62834/1‑238 (MQ=255) aaCGACAAGGTATAAAAGTTCTTTTTAAAATCTGGGGAGTAATAAG‑TACTTCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCg > 1:713558/1‑238 (MQ=255) aCAAGATATAAATGTTTTTTTTAAAATCTGGGGAGTAATAAG‑TCCTTCCAGAAGAGCTTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATTTGC‑GA‑TGTTACCCAGTCAGAACGCGTA‑GTGCGATAC‑CCCAATTCCCCCTTGCTACCATCAGCGTTGACGC‑TTTTGATCTTTGCATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTcaca < 2:292242/239‑1 (MQ=255) ttCTTTTTAAAATCGGGGGTATAATAAG‑TATTTCCTAAAGGCCCTTTATTAAATGCTCCTTTTTTTTTCC‑CATCGATTTGC‑GA‑TTTTAACCACCCCGGACGCGGATGTG‑AATAA‑CCCAATTTCCCCTTGCTACCATCAGCGTTGAACC‑GTTTGATCTTTCCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAg < 2:603489/237‑1 (MQ=255) cTTTTTAAAATCTGGGGAGTAATAAG‑TACTTCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTaa > 1:966079/1‑234 (MQ=255) cgtgggAGTAATAAG‑TCCTCCCTGAGGTGCCTTAATTAAATGCGTTTTTGTTATTCC‑CTTCGTTTGGG‑GT‑TGTTACCCCGGCC‑AACCTGTA‑ATTGGAAAACCCCATTTTCCCCTTCCTATCATCAGCGTGGAAGC‑TTTTGATCTTGGCAAAAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGataa < 2:374100/236‑1 (MQ=255) ggtgTATTAAG‑TACTTCCTGAAGAGCTTTGATTAATTGCGCTTTTGTTATTCT‑CATCGATATGC‑GA‑TGTAACCCAGTCCGACCGCTTG‑GTGCGATAA‑CCCATTTCCCCCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTCCATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATAc < 2:1179654/235‑1 (MQ=255) tccTTCGTGAAGAGCCTGGATAAAATCCCTTCTTTTTATTCT‑CATCGAT‑TGCGGT‑TGTTACCCCGTCCGACCGCGTG‑GTGCGAAAC‑CCAAATTCCCCCTTCCTATCATAAGCGTTGAAGC‑GTTTGATTTTTGCAAAAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATc < 2:966079/237‑1 (MQ=255) ttCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATccc > 1:1138731/1‑238 (MQ=255) ttCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATccc > 1:1206655/1‑238 (MQ=255) ttCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGACATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAAAAc > 1:1283308/1‑224 (MQ=255) ttCCTAAAGAGCTTTGATTAAACGCCCTCTTGTTTTTCC‑CATCG‑TATGG‑GATTTTTAACCAGCCCGAACGGGTA‑GTGCGATAA‑CCCAATTACCCCTTCCTATCATCAGCGTAGAAGC‑TTTTATTTTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCg < 2:332368/239‑1 (MQ=255) tccTTGATAAAAGGCTCTCTTGTTATTCT‑CATCGATTGGC‑GA‑TGTTAACCAGCCCGAACGCGTA‑GTGCTATCA‑CCCAATTTCCCCTTGCTACCATCAGCGTTGAAGC‑TTTTGATCTTTGCATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAg < 2:897502/195‑1 (MQ=255) tcTTGATTAAATGCCTTTTTTTTTTTTC‑CACCGATTTGC‑GA‑TTTAAACCAGCCCGAACGCGTA‑TTGCGAAAC‑CCCAATTCCCCCTTCCTATCATCAGCGTTGAGGC‑TTTTGATCTTTGCAACATTTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTcaca < 2:274462/182‑1 (MQ=255) ccTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGt > 1:59927/1‑239 (MQ=255) ccTTGATAAAATCCCTTCTTGTTATTCT‑CAGCGATAGGC‑GG‑TGTAAACCGGCCCGAACGCGTG‑GTGCAATAC‑CCCAATTTCACCTTGTTATCATCGGCGTTGAAGC‑GTTTGATCTTTGCATAAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGa < 2:719550/207‑1 (MQ=255) ttgtatAAATGCGTTCTTTGTATGCT‑CATCGATTTGC‑GA‑TTTTAACCATTCCGAACGGGTG‑TGGCAATAA‑CCCAATTTCCCCTTGCTAACATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTg < 2:59927/234‑1 (MQ=255) aTTAAATGCGTTCTTTTTATTCT‑CATCGATAGGC‑GA‑TGTTACCCAGTCCGAACGCTGA‑GGGCGATAA‑CCCAATTTCCCCATCCTACCACAAGCGTTAAAGG‑TTTTTATCTTGCCATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCaa < 2:1420500/200‑1 (MQ=255) aattGCGCT‑TTTTTATTCTCCACCGATTGGC‑GT‑TGTTACCCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTCCTATCATCAGCGTTGAAGC‑GTTTGATCTTGCCATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCactac < 2:234206/236‑1 (MQ=255) aatggcgcTCTTGTTCTGCT‑CATGGATTTGC‑GA‑TGTTACCAAGTCCGAGCGCGTA‑GTGCGATAA‑CCCATTTCCCCCTGCCTACAACCAGGGTTAAACC‑TTTTGATTTCTACATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCactac < 2:1126309/235‑1 (MQ=255) aaTGCGCTTTGATTATTTC‑AATCAATTTGC‑GT‑TGTCAACCAGTCCAAACGCGTA‑GTGCAAAAC‑CCAAATTCCCCCTTCCTATCTGCAGCGTTGAAGC‑TTTTGATCTTTCCAAAAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCactact < 2:1206655/239‑1 (MQ=255) aaTGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCaa > 1:897502/1‑196 (MQ=255) aTGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTa > 1:274462/1‑183 (MQ=255) aTGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCt > 1:719550/1‑207 (MQ=255) aTGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCact > 1:457347/1‑235 (MQ=255) ctctTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATAccc > 1:1420500/1‑200 (MQ=255) ctctTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCg > 2:326264/1‑213 (MQ=255) ctctTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCg < 1:326264/213‑1 (MQ=255) cATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTc > 2:456631/1‑236 (MQ=255) aatcaatgggC‑GA‑TGTTAACCAGTCCGAACGCGTG‑GTGCGATAC‑CCCATTTACCCCTGGCTACCATCGGC‑TGGAAGCTGTTTGACTTTTCCATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCt < 2:756580/230‑1 (MQ=255) cgattggagA‑TGTCAACCAGCCCGAACGGGTG‑GTGCAATAA‑CCCACTTTCCCCTTCCTACCACCGCCTTTAACGC‑TTTTTATCTTTGCACCATTTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTgg < 2:793142/199‑1 (MQ=255) gA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCAtt > 1:734496/1‑98 (MQ=255) tGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCactact > 1:793142/1‑207 (MQ=255) ttACCCAGTCGGAGCGCATA‑GTGCGAAAC‑CCCAATTTCCCCTCGCTACCATCAGCGTTGAAGC‑GTTTGATTTTAGCATCAATTACCCCGCCATTGAAGCGACCAAATACAAc < 1:813097/112‑1 (MQ=255) tAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAg > 1:125797/1‑239 (MQ=255) accattctcaaaCTCGTA‑GGGCGAACC‑CCCAATTCCAACTTGTTTACAACGGCGTCGACGT‑TTTAGATCTTTACATAAATAACCCCGCCATTGAAGCGACCAAATTCAACCGGAACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGt < 2:640481/229‑1 (MQ=255) tCCGAACGGGTA‑GGGCAATAC‑CCCAATTTCCCCTTTCTATCATAAGCGTGGAAGC‑GTTTGATCTTTACATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCa < 2:498145/192‑1 (MQ=255) tCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACt > 1:803442/1‑239 (MQ=255) cGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACaaaa > 2:813097/1‑112 (MQ=255) tA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAAc > 2:1075543/1‑94 (MQ=255) tA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAAc < 1:1075543/94‑1 (MQ=255) tA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCAt > 1:498145/1‑192 (MQ=255) tA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATAAAGATAATACCCCTGTGCCATCCAGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGtca > 2:397114/1‑239 (MQ=255) cGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATAGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAACACCGtccatcaa > 2:1050295/1‑239 (MQ=255) gATAA‑CCCATTTCCCCCTTCCTACCATCGGCGTTGAAGC‑GTTTGATCTTTGCATAAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGataa < 2:1208604/143‑1 (MQ=255) aTAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAAt > 1:363127/1‑239 (MQ=255) tAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATa < 1:1118173/239‑1 (MQ=255) cccAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTGGCACTACTGGCATCGGACTCATTCGCTgg > 1:1228939/1‑197 (MQ=255) ccAAGTACACCTTGCTACCATCAGCGTTGAAGC‑GTTTGATTTTGTCATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATGCCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTGATTAGTTGCACTAATACCGTCAATCAAATAGGCa < 2:521779/239‑1 (MQ=255) caaaTTTCACCTGCCTATCATCAGCGGTGAAGC‑GTTTGATCTTGACATAAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCa < 2:125797/237‑1 (MQ=255) cAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGttatta > 1:10287/1‑208 (MQ=255) tttCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCtgtg > 1:1208604/1‑143 (MQ=255) cTATCATCAGCGTTGAAGC‑TTTTGATCTTTACATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACAt < 2:639174/137‑1 (MQ=255) accaGCGTGAAAGC‑TTTTGATCTGTGCATCAATTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc < 2:1138731/237‑1 (MQ=255) cGTTGAGGC‑TTTTATTCTTAGCATAATTTCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCa < 2:154544/215‑1 (MQ=255) cGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGc > 2:620485/1‑99 (MQ=255) cGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGc < 1:620485/99‑1 (MQ=255) cGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAata > 1:639174/1‑137 (MQ=255) cGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACCGTGa > 2:330818/1‑239 (MQ=255) tGAAGC‑GTTTAATTTTTGACTCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACCGTGAATa < 2:1356212/239‑1 (MQ=255) aaGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGca < 2:967850/58‑1 (MQ=255) aaGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGca > 1:967850/1‑58 (MQ=255) aaGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCaa > 2:787598/1‑103 (MQ=255) aaGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCaa < 1:787598/103‑1 (MQ=255) aaGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACCGTGAATaga > 1:225638/1‑239 (MQ=255) tttGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAAc < 1:336157/48‑1 (MQ=255) tttGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAAc > 2:336157/1‑48 (MQ=255) tttGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTTGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACCGTGAATAGAGAttt > 2:270348/1‑239 (MQ=255) tttGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAgg > 1:154544/1‑215 (MQ=255) tttGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACCGTGAATAGAGAttt > 1:535841/1‑239 (MQ=255) gATCTTTGCATCTATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGt > 1:662389/1‑188 (MQ=255) atttttCCATCAATCCCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACCGTGAATAGAGATTTtctc < 2:225638/236‑1 (MQ=255) tttGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATa > 1:501426/1‑59 (MQ=255) tttGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATa < 2:501426/59‑1 (MQ=255) aaTTACCCCGCCATTGAAGCGCCCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCCCATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACCGTGAATAGAGATTTTCTCAGGGCGaaca > 1:1048864/1‑236 (MQ=255) aCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCaa > 2:193424/1‑79 (MQ=255) aCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCaa < 1:193424/79‑1 (MQ=255) aCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGataa > 2:1090285/1‑84 (MQ=255) aCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGataa < 1:1090285/84‑1 (MQ=255) aCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCa < 2:1360374/186‑1 (MQ=255) aCCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCa > 1:1360374/1‑186 (MQ=255) | CGAGTTCCTGATTAAACGACAAGGTATAAAAGTTCTTTTTAAAATCTGGGGAGTAATAAG‑TACTTCCTGAAGAGCCTTGATTAAATGCGCTCTTGTTATTCT‑CATCGATATGC‑GA‑TGTTAACCAGTCCGAACGCGTA‑GTGCGATAA‑CCCAATTTCACCTTGCTATCATCAGCGTTGAAGC‑GTTTGATCTTTGCATCAATTACCCCGCCATTGAAGCGACCAAATTCAACCGGCACAAAACTGTCATAAAGCGTCACATTGTCCAGTAAGCTGACATCAAGATAATACCCCTGTGACATCCCGCTAATATTGGTTGCACTACTGGCATCGGACTCATTCGCTGGGTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACCGTGAATAGAGATTTTCTCAGGGCGAATA > NC_000913/1576923‑1577356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |