| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,288,852 | 0 | C | T | 27.7% | 193.0 / 34.5 | 95 | pseudogene (63/2525 nt) | yejO | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| Reads supporting (aligned to +/- strand): ref base C (20/48); new base T (26/0); total (47/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.16e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGT > NC_000913/2288632‑2289089 | ccATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCGCCGGCTAGCTTTTTCTAGGTCAACACCATCa > 2:193667/1‑237 (MQ=255) ttGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAATAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGacaac < 1:512647/224‑1 (MQ=255) tGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCa < 1:373695/239‑1 (MQ=255) tGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACGGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCa < 2:1149966/239‑1 (MQ=255) aGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCGCTGGATATCTTTTTTCAGGACAACAACATCCACTGTCCCAcc > 1:53032/1‑239 (MQ=255) aGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCCTAAACCAGCTGGATATCTTTTTTCTGGACAACAACATCAACTTTCTCACCAAAc > 2:447715/1‑238 (MQ=255) tCTGGTTTGCCGCGCCACCCATTTGAATAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCCTGATATCTTTTTTCACGACCACACCACCCACt > 2:512647/1‑224 (MQ=255) ggTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACa < 2:1312330/239‑1 (MQ=255) gTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCa < 2:298790/226‑1 (MQ=255) gTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCa > 1:298790/1‑226 (MQ=255) ttGCCGCTCCACCCATTTGAACAATTTGATAACCGTAATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGtt < 2:526794/239‑1 (MQ=255) cATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTa < 1:447715/239‑1 (MQ=255) aTTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGcc < 1:1048643/231‑1 (MQ=255) gAACAATTTGATAACCGTCATTGAATACTGAGTATTCTGCGGCTCCATTCATTTCAATGTACTGATACCCTCCTTTAATTTCAGTATTATTACTTACACCAAATTCTTTTAGATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAGCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAAGGCTATGGGt < 2:1155245/239‑1 (MQ=255) tttGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAATCAGCTTGGTATCTTTTTCCAGTACCACACACTCAACTGTCTCACCATACTCAACAATTTATACCCATGCTCTgt > 2:1048643/1‑230 (MQ=255) tttGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGtt < 1:844573/215‑1 (MQ=255) gTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCCTAAACCCACTGGAGATCTTTTTTCAGGACAACACCATCAACCTTCTCCCCCTACTCAACAGttttttccaaat > 2:844573/1‑205 (MQ=255) tttAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTg < 1:401467/181‑1 (MQ=255) tttAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGtc < 1:434749/183‑1 (MQ=255) tttAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGcc < 1:936850/207‑1 (MQ=255) ttgaaTACTGAGTATTCTGCGGCCCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAACCCAGCTGGATATCTTTTTCCAGGACAACGCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTa < 1:134973/211‑1 (MQ=255) tACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGacaac < 1:1056492/165‑1 (MQ=255) aCTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATTTTTTTCCAGGACCACAACATTAACTGTCTCACCATACTCAACAGGTGATGCCAATGCTATGGGGGAATATAAGGAAGGTGCG‑AATAAGCg > 1:192353/1‑239 (MQ=255) aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCTGTCCCATCAACCACCTGGATATCTTTTTCCCGAACAACACCATCAACTCTCTCACCACACTcc > 2:434749/1‑184 (MQ=255) aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCCTAAACCAACTGGGTATCTTTTTTCAGGACAACACCATCAACTGTCTCACCCTa > 2:401467/1‑181 (MQ=255) aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAGCCAGCTGGGTATTTTTTTTCCGGACAACACCATCAACCGCCTTACCAAACCTAACAGGTGATGCCAATGATCTGGGGGAATATAAGGAAGGGGCG‑AATAAGAGGGGa > 2:1097827/1‑239 (MQ=255) aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATTAACCAGCTGGGTATCTTTTTTCAGGACAACACCATCAACTTTCTCACCATACATCACACTTGATGCCCATGCTATgg > 2:936850/1‑207 (MQ=255) aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGGTATCTTTTTTCTGGACAACACCATCAACTGTCTCCCCCTACTCAACAGTTGTTGCCCATGCTATGGGGGAATATAAGGAAGGTGCG‑CATAAGCGGGGa > 2:193633/1‑239 (MQ=255) aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGt < 1:386826/172‑1 (MQ=255) tATTCTGCGGGGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGAGGCCAATGCTATggg < 1:528280/206‑1 (MQ=255) tCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCCGCTGGATATCTTTTTTCAGGACAACACCATCAACt > 2:1056492/1‑165 (MQ=255) ggcgCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCATTAACCCGCTGGGTATTTTTTTTCAGGACAAAACCATCAACTGTATCACCATACTCAACAGTTGATGTCAATGCTATGGGTGAATATTAAGAAGGGGCG‑AATACGCGGGGGAATTCAtctc > 2:1325344/1‑239 (MQ=255) ggcgCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTGCCCTAAACCAGCTGGATATCTTTTTTCAGGACAAAAACCTCCACTGTCCCAcccatc > 2:386826/1‑168 (MQ=255) ttcattTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGTATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCaa < 1:1323443/151‑1 (MQ=255) ttcattTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGt < 1:378711/192‑1 (MQ=255) cAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGtt < 1:370014/167‑1 (MQ=255) tGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGTATTGATTTTCGTATTATTGGCGGTTCCATTAACCCGCTTGATATCTTTTTTCAGGAAAAAACCATCAACTGTCTCAcc > 2:1323443/1‑151 (MQ=255) tGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCATAAACCAGCTGGATATTTTTTTCCAGGACAAAACCATCAACTGTCTCACCATACCCAAAAATTTATGCCAATGCTATGGGGGAAAATaagg > 2:378711/1‑192 (MQ=255) tACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGacaac < 1:614227/131‑1 (MQ=255) tGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGAG‑AATAAACGGGGAAATTCTTCTCGGCTGACTCA‑GTa‑ctttcattt > 2:889614/1‑239 (MQ=255) aTACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTTCAGGACAACACCCTCAACTGTCTCACCATACTCCACACttgttgtccatt > 2:370014/1‑161 (MQ=255) aTACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAATTGATTCCAAAGCTATGGGTGAATATAAGGAAGGTGGG‑AATAAGAGGGGAAATTCTTCTTGGCTGACTCA‑GTc‑attttatttat > 2:178418/1‑237 (MQ=255) cTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCATAAACCAGATGGGTATCTTTTTTCTGGACAACACCATCAACTGTTCCCCCCTACTCAAAAGGTGATGCCAATGCTATTGGGGAATATAAGGAAAGTGCG‑AATAAACGGGGAAATTCTTCTCGGCCGGCTCA‑Gtt‑atgtccattttttatt > 2:1071913/1‑228 (MQ=255) cTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTTCAGGACAACACCATCAACTGTCTCACCATACTCAAAAATTGATGCCCAAGCTATGGGTGAATATAAGGAAGGTGCG‑AAAAAGCGGGGTAATTCTTCTCGGCTGGTTCAGGTc‑ttttctttttt > 2:751547/1‑233 (MQ=255) cTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGacaa < 1:128498/120‑1 (MQ=255) cTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGacaa > 2:128498/1‑120 (MQ=255) cTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTa > 2:680213/1‑165 (MQ=255) cTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTa < 1:680213/165‑1 (MQ=255) cGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGGTATCTTTTTCCAGGACAACACCATCAACTGTCTCACCCTACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGCACCA‑GTC‑ATTTCATTTCT‑TCATGttt > 1:299366/1‑239 (MQ=255) cGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAg < 1:611772/112‑1 (MQ=255) cGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATa > 1:1202263/1‑139 (MQ=255) cGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATa < 2:1202263/139‑1 (MQ=255) tAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAg < 1:1149965/239‑1 (MQ=255) aGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCCTAAACCAGCTGGGTATCTTTTTTCAGGACAACACCa > 2:611772/1‑112 (MQ=255) tattatTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCCGCTTGATATTTTTTTTCAGGACAACACCATCAACTGTCTCACCCTACTCAAAAGTTGTTTCCAATGCTATGGGGGAATATAAGGAAGGTGCG‑AAAAATCGGGGAAATTCTTCTCTGCGGACTCA‑TTA‑ACTTCCTTTTT‑TCCTGTTTGAGCCGCttttt > 2:1421385/1‑239 (MQ=255) tattatTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagga < 1:200052/166‑1 (MQ=255) attattACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGAtttttt < 1:1421385/239‑1 (MQ=255) tattaCTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTtct < 1:178418/239‑1 (MQ=255) tacACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTTCCGGACAACACCATCAACTGTCTCACCAAACTCTACCGTTGATGCCAATGCTATGGGGGAATATTAGGAAGGTGCG‑CAt > 2:200052/1‑166 (MQ=255) acCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCCACTGGATATCTTTTTTCAGGACAAAACCATCAACTGTTTCACCATACTCAACAATTTATGCCAATGCTATGGGGGAATATAAGGAAGGTGCG‑AAAAAACGGGGGAATTCTTTTCGGCTGGCTCC‑GTC‑ATTTCATTTCT‑TCATGTTTTAGCCGCTTTTTTTTCCCGTaaaa > 2:267721/1‑237 (MQ=37) cAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAAACCACTGGGTATCTTTTTTCCGGACAAAACCCTCCAATTTCTCACCCTACCCCACAGTTTATGTCCATTCTATTGGGGAATATAAGGGAAGGGCG‑GATAAACGGGGGAATTCTTCTCTGCGGACTCA‑GTCAATTTCA‑TTCT‑TCATGTTTTGTCCGGATTTTTTTTCCGTAAATg > 2:1353934/1‑237 (MQ=255) ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCa < 1:1091920/183‑1 (MQ=255) ttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTg < 1:820710/93‑1 (MQ=255) ttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg < 1:193633/239‑1 (MQ=255) ttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg < 1:159595/239‑1 (MQ=255) ttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTAACCTAAACCACCTTGGTATCTTTTTTCAGGACAACACCCTCAACAGTCCCACCCTACTCAACAGTTTTTGTCAAATCTATTGGGGAAGATAAGGAAGGGGCGCAACAACGGGGGAAATT‑TTTTTGGCTGAACTA‑TGC‑ATTTACTTTCT‑TCTTGTTTGTGGCGGTTTTTTCTTCCGTAAATGCCTTGGATCa > 2:1402323/1‑238 (MQ=255) tataTGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCACCTGGATATCTTTTTACCGGACAACACCATCCACTGGCTCACCATACTCAACAGTTGTTGCCCAAGCTATGGGGGGATATAAAGAAGGTACG‑ACCAAACGGGGAAATTTTTTTGGGATGGCTCA‑CGC‑ATTTTATTTTTCTCTTG‑TTGAGGCGGTTTTTTTCTCCGTAAATGCAtttcatcca > 2:989417/1‑231 (MQ=255) atatGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGcc < 1:889614/239‑1 (MQ=255) tGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCaa < 1:583055/85‑1 (MQ=255) gCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTTTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt < 1:121433/239‑1 (MQ=255) tGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCACCTGGGTATCTTTTTTCAGGACAACACCATCAACCGTCTCACCCTACTCAACAGTTTATTGCAATGCTATGGGGGAATATAAGGAAGGGGCG‑AATAAGCGGGGGAAATCTTCTCGGCGGGCTCA‑GTC‑ATTTTATTTCT‑TCATGTTTGTGCCGCTTTTTTTTCCCCTAAATACCCTGAATTAGCCCAtttt > 2:372674/1‑238 (MQ=255) ttCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCCGCTGGGTATTTTTTTTCAGGACAACACCATCAACTGTCTCACCCTa > 2:820710/1‑93 (MQ=255) ttCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGcc < 2:847492/109‑1 (MQ=255) ttCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGcc > 1:847492/1‑109 (MQ=255) ttCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGaaa < 1:452484/153‑1 (MQ=255) cGCCAGGATTGATTTTCGTATTATTGGCGGTTCCCCAACCCAACAGGGTAACTTTTTTTTGAACAACCCCAGCAACTTTCTTACCAAACTCCAAAGTTGAGGCCAACGCTAATGGCGTATATATGGTAGGGGGG‑AAAAAATGGGGAAAATCTTTTCGGCGGGCTCC‑TCG‑ATTTTATTTCT‑TCATGTTTTGGCCGAGTTTTTCTTCCGCAAAAGCCTTGAATCAGCCTTATTAGTCCGtt > 2:1053173/1‑239 (MQ=255) cGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGGTATCTTTTTTCAGGACAACACCATCAACTGTCTCAcc > 2:583055/1‑85 (MQ=255) ggATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGGTATCTTTTTTCAGGGCAAAACCCTCAACTGTCTCACCCTACCCAACAGTTTGTGCCAAAGCTATGGGTGAATATAAGGAAGGGGCG‑GATAAACGGGGGAAtttttttagg > 2:452484/1‑148 (MQ=255) ttttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAttt < 1:372674/239‑1 (MQ=255) aaaCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGt < 1:1097827/239‑1 (MQ=255) cccgCTGGATTTCTTTTTCCAGGACACCACCATCAACTGTCTCACCATACTCACCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag < 1:729623/236‑1 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGt > 2:865367/1‑74 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGt < 1:865367/74‑1 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAAttctt < 2:820810/111‑1 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAAttctt > 1:820810/1‑111 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcccc < 1:158363/223‑1 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcccc > 2:158363/1‑223 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgaga > 2:1292671/1‑237 (MQ=255) cTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc < 1:1379106/172‑1 (MQ=255) cTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc > 2:1379106/1‑172 (MQ=255) cTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGAtc > 1:894467/1‑238 (MQ=255) tGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAc > 2:333652/1‑191 (MQ=255) tGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAc < 1:333652/191‑1 (MQ=255) tttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGAc < 1:1353934/239‑1 (MQ=255) tCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt < 1:267721/239‑1 (MQ=255) | CCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCG‑AATAAGCGGGGAAATTCTTCTCGGCTGACTCA‑GTC‑ATTTCATTTCT‑TCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGT > NC_000913/2288632‑2289089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |