Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,665,698	0	T	C	30.0%	104.2 / 12.5	51	D38G (GAT→GGT)	gadX	acid resistance regulon transcriptional activator; autoactivator
Reads supporting (aligned to +/- strand):  ref base T (34/1);  new base C (0/15);  total (34/17)
Fisher's exact test for biased strand distribution p-value = 7.11e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAA‑TATCTCTACTACAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGA  >  NC_000913/3665476‑3665920                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                   aGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAA‑TATCTCTACTACAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑t                                                                                                                                                                                                                  >  1:16574/1‑238 (MQ=255)   cATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAA‑TATCTCTACTACAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑Ca                                                                                                                                                                                                               >  1:1102658/1‑238 (MQ=255)              aGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAA‑TATCTCTACTACAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTaaaa                                                                                                                                                                                                   >  1:376718/1‑239 (MQ=255)                        gttATCCGGCGATGGTTGCGCAACTTCTGAAAAAACAGAAT‑TATTTTTAATAC‑GTGAAGAAACAAGTAAGGAAGAATTTTTTTTAGGGGAATGAAGTTTTAATCCCCCCTCTTTGAG‑AGGGGGAAAAAAAAAGAAAAGGGTCTCCCTGCC‑CACAAAAAAAAAATTTC‑CAACCCATTTTCCTCCT‑AAATTTTGCTTTACCCCCGAAAAACC‑A‑GG‑TCCACCGCCATTAAAATAGCGATAtt                                                                                                                                                                                         <  2:1358820/238‑1 (MQ=255)                                 cGATAGTTGCGCAACTTCCTGAAAAACAGGAA‑TATCTCTACTACAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTaaaa                                                                                                                                                                                                   >  1:417990/1‑220 (MQ=255)                                  gATGGTAGCGCAACGTACTAAAAAACAGTAA‑TACCTCTACGACAGAGAAG‑AACGTGTAAAGAAGAATCTTTTTTATGTGAATAAGTATTTAACCCCCCCTCCTTGAGCATGGGGAAAAAAAAAG‑AAACCGTGTCCCTGGA‑CACAAATAAAAAATTTA‑CAACCCATTTATCTACTGGATTTTGGTTTCCACCCCAAAAACCC‑G‑GG‑C‑CACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                                                                                               <  2:84939/239‑1 (MQ=255)                                          gcgaattttcagAAAAACAAGAATTTTCTCTATCACAGAGAAG‑AACGAGTAAAGAAGAATTTTTTTTATGTACATAAATTTTTAACCCCTCCCCCTGGAGCATGGGGAAAAAAAATA‑AAGGCGTGCCCCTGGA‑CAAAAAAAAAAAATTTC‑CAACACACTTATCTACTAAATTTTGGTTTGCACCCGAAAAAACC‑G‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt                                                                                                                                                                         <  2:1045192/227‑1 (MQ=255)                                           gcAACTACCTAAAAAACAGAAA‑TATCTCTACTACATTAATG‑AACGAGTAATGAAGAATTTTTTTTAGGTGAATGAAGATTTACTGCCTCCTCCTTGAGAATCGGAAAAAATAATG‑AATGCGTCTCCCTGAA‑CACAAATAAAAAATTTA‑CACCTCACTTTTCTCCTAAATTTTGGCTTCCACCAAAAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTga                                                                                                                                                                       <  2:1014739/238‑1 (MQ=255)                                                 tCCTGAAAAACAGGAA‑TATCTCTACTACAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatata                                                                                                                                                                >  2:1244405/1‑239 (MQ=255)                                                   aagAAAAACAGAAA‑TATCTCTTGTACAGGAGAG‑AAAGAGTAATGAAGATTCTTTTTTATGTACAGAAATATTAAATCCCCCCTCCTGGAGAATCGGAAAAAAAAAGG‑AAAGCGTGTCCCTTGA‑CACAAAAAAAAAATTTT‑CAACACACTTATCTTCTC‑AATTTTGCTTTCCCCCAAAAAAACCGG‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                                                                                                                                                                    <  2:1013457/231‑1 (MQ=255)                                                             ggAA‑TATCTCTACTACAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg                                                                                                                                                          >  1:1013457/1‑233 (MQ=255)                                                                      tctACAAGAGTAATA‑AAGGAGAAAAAAAAAAATTTTTTTAGGTAAATGAAGTTTAAGCCCCCCCTCCTTGAGCAGGGGGAAAAAAAAGG‑AAAGCGTGTCCCTTGA‑CA‑GAAAAAAAAATTTTCCACCCCTCTTATCAACTAGATTGTGGCTTGCATCC‑AAAAAACC‑A‑GGTT‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa                                                                                                                                                 <  2:245129/234‑1 (MQ=255)                                                                       ctactaCAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                               >  1:1273108/1‑219 (MQ=255)                                                                       ctactaCAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                               >  1:620142/1‑219 (MQ=255)                                                                         acaaaggTGATG‑AGCGAGTAATGAAGAAATTTTTTGATGTGCAAGAAGATTTAATGCCCCCTCCTGGAGAATGGGAAAAAAAAATA‑AAAGCGTCTCCCTTAA‑CACGAATACAAAATTTT‑CAACACCCTTATCTACACGATTTGGTCTTGCACCCAAAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTa                                                                                                                                         <  2:16574/233‑1 (MQ=255)                                                                             cAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                               >  1:1160697/1‑213 (MQ=255)                                                                                tgatg‑aACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                               >  1:22462/1‑210 (MQ=255)                                                                                tgatg‑aACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg                                                                                                                                                          >  1:564805/1‑215 (MQ=255)                                                                                tgatg‑aACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGa                                                                                                                                       >  1:245129/1‑234 (MQ=255)                                                                                tgatg‑aACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAt                                                                                                                                   >  1:262831/1‑238 (MQ=255)                                                                                tgatg‑aACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑C‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTAAGTCTTGCATACGCAATTAGACAAt                                                                                                                                   >  1:1183618/1‑238 (MQ=255)                                                                                  atg‑aACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTc                                                                                                                                 >  2:1164540/1‑238 (MQ=255)                                                                                      aaCGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCAt                                                                                                                             >  1:635893/1‑239 (MQ=255)                                                                                                                        ataTTTAACCCCTCCTCCTAGAGAATCGGGAGAAATAAGA‑AAAGCGTGGCCATAGA‑CAAGAATAAAAAATTTC‑AAACCCACTCTTCTACAAAAATTTGACGGCCACCCAAAAAAACG‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACg                                                                                                                                               <  2:480422/185‑1 (MQ=255)                                                                                                                                ccccccctcctTGAGCATGGGAAAAAAAAATA‑AAGGCGT‑TCCCTTTACCACAAATAAAAAATTTC‑CAACCCATTTATTTACTCGATTTTGGCTTCCACCCAAAAAACCC‑A‑GG‑C‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                                                                                      <  2:692600/183‑1 (MQ=255)                                                                                                                                       tcctTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATAtt                                                                                    >  2:119238/1‑231 (MQ=255)                                                                                                                                          ttGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg                                                                                                                            >  1:692600/1‑188 (MQ=255)                                                                                                                                             aGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTCCTCGCATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTaaa                                                                                                                                                                                                    >  1:886019/1‑113 (MQ=255)                                                                                                                                             aGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCa                                                                                                                 >  1:11513/1‑196 (MQ=255)                                                                                                                                               cATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTa                                                                    >  1:805548/1‑239 (MQ=255)                                                                                                                                                  cGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCAt                                                                                                                                                                                                                                    >  2:417177/1‑80 (MQ=255)                                                                                                                                                  cGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCAt                                                                                                                                                                                                                                    <  1:417177/80‑1 (MQ=255)                                                                                                                                                  cGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGa                                                                                                                                       >  1:614739/1‑169 (MQ=255)                                                                                                                                                   gggAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGa                                                                                                                                       >  1:566496/1‑168 (MQ=255)                                                                                                                                                       aaaaTAATG‑AAAGCGTTCCCCTTGA‑CACAAAAACAAATTTTA‑CAACACTCTTTTCAACTCAAATTTGCTCTGCACCCACAAAAACC‑A‑GG‑A‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCAcgccg                                                            <  2:376718/238‑1 (MQ=255)                                                                                                                                                        aaaTAAAA‑AAGGCGTCTCCCTT‑A‑CCCAAAAAAAAAATTTTCCAACCCCCTTACCTACTAGATTTTGGCTTCCACCCAAAAAACCC‑G‑GG‑C‑CACCGCCATTAAAATAGCGATATTCAcc                                                                                                                                                                                     <  2:810637/117‑1 (MQ=255)                                                                                                                                                             atG‑AAATCGTGTCCCGTCA‑AAATAAAAAAAAATTTA‑CAACACCTTTATCAACTGAAGTGTGTCTTCCACCCGCAAACACC‑A‑GG‑T‑GACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGa                                                                                                                      <  2:495030/175‑1 (MQ=255)                                                                                                                                                                   cgtgtttCCCTGGA‑CACAAAAAAAAAATTCA‑CAACCCACTTATCTACTAGATTTGGGCTTGCACCAGAAAAAACC‑G‑GG‑C‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa                                                                                                                                    <  2:1242468/150‑1 (MQ=255)                                                                                                                                                                   aGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATg                                                                                                                                                                           >  1:810637/1‑117 (MQ=255)                                                                                                                                                                        gtCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGCCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGtt                                                                                                            >  1:495030/1‑175 (MQ=255)                                                                                                                                                                             ttGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTa                                                                                                                          >  1:1242468/1‑156 (MQ=255)                                                                                                                                                                                                          acTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTttat                                                                           >  1:352360/1‑176 (MQ=255)                                                                                                                                                                                                            ttATCTATGCGAATTGGGCTTGCAACCGAAAAAACC‑A‑GG‑A‑CGCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATCACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGaa          <  1:911502/239‑1 (MQ=255)                                                                                                                                                                                                            tatacatcTCGATTTGTGCTTGAACCCCAAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGgag            <  1:1286002/230‑1 (MQ=255)                                                                                                                                                                                                              aTCTACTTGATTTTGCCTTGCACCCG‑AAAACCC‑AGGG‑A‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAat                                                                                                    <  2:1248897/147‑1 (MQ=255)                                                                                                                                                                                                                 tcagagAATTGGGCGTGCACCCAAAAAAACC‑A‑GG‑C‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGga     <  2:262831/234‑1 (MQ=255)                                                                                                                                                                                                                    tCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTaaaa                                                                                                                                                                                                   >  1:723845/1‑46 (MQ=255)                                                                                                                                                                                                                    tCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAattgatt                                       >  1:6970/1‑202 (MQ=255)                                                                                                                                                                                                                    tCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGgatga  >  2:216841/1‑239 (MQ=255)                                                                                                                                                                                                                      gAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATa                                                                                                                                                                                                 >  1:467978/1‑46 (MQ=255)                                                                                                                                                                                                                      gAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGCCAAATTGATTGTTAAATAACTTTAAACGAAGCGGTAGAAAAGgatga  >  2:1286002/1‑237 (MQ=255)                                                                                                                                                                                                                        aTTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTa                                                                                                >  1:1108885/1‑141 (MQ=255)                                                                                                                                                                                                                        aTTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATaaa                                                                                          >  1:1248897/1‑147 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                   AGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAA‑TATCTCTACTACAGTGATG‑AACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATG‑AAAGCGTGTCCCTTGA‑CACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACC‑A‑GG‑T‑CACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGA  >  NC_000913/3665476‑3665920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑