| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 540,558 | 0 | T | G | 32.2% | 185.0 / 34.5 | 90 | intergenic (+50/‑7) | allB/ybbY | allantoinase/putative uracil/xanthine transporter |
| Reads supporting (aligned to +/- strand): ref base T (11/50); new base G (29/0); total (40/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.98e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGT > NC_000913/540335‑540789 | tATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGCTTCCTCGGTTAAGGGGGGtttttttttatt > 2:240986/1‑230 (MQ=255) aTGATCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGCATCTTCCGTTTATGTGTGttgtttttctatt > 2:172382/1‑228 (MQ=255) tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCGGTTTATGTGTGTTTATGTTCACTTTTgtgttctgcg > 2:2275096/1‑229 (MQ=255) tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGGGTTTTTGTTTCATTTTTCAGTCAGcc > 1:819904/1‑238 (MQ=255) cTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGc < 2:1012919/239‑1 (MQ=255) ggAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCt < 2:193312/239‑1 (MQ=255) atCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGGGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTAt < 1:273481/239‑1 (MQ=255) cGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACAACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGGTTAGGGGGGGTTTTGTTTTATTTTTCAGTCCGGCGGGAAAACCTGTTATC‑a > 2:2246938/1‑239 (MQ=255) tATGGTGGCCGTACCATTGGCGCGCGTATCACGAAAACAATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTTCCGTTGTGGTGTGTTTTTGGTTAATTTTGCAGTCAGACGTCGAAGACTGTTGTT‑TGGAGTTCTGG‑GGttgt > 2:484043/1‑235 (MQ=255) tGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGaa < 1:1992724/207‑1 (MQ=255) tGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATATGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGGTTAGGGGTGTTTTTTTTCAAATTTTCAGTCCAGCGCGAAAGGCTGTTGTCTAGGTTGTCA‑T‑GGtttttttt > 2:1725213/1‑239 (MQ=255) tGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGCTTCCTCCGTTTAGGGGTGTTTTTGTTTCATTTTTCTGTCTGCCGCGGAAGCCTGTTATT‑AGGATTTCAGT‑GGTTTTTCTTTAt > 2:1563123/1‑239 (MQ=255) aCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTGTCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTg < 1:865770/238‑1 (MQ=255) aCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCGGGTTAGGGGTGTTTATGGTCAAATTTTCAGTCAGACGCGCAAGCCGGttgt > 2:1992724/1‑205 (MQ=255) aCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGGGGTTTTGTTTAATTTTGCAGTCAGCCGCGGAAGACCTTTTTT‑AGGGTTTTCGT‑GGGTtttttttttttttttc > 2:646209/1‑237 (MQ=255) cATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCaa < 1:132721/239‑1 (MQ=255) cATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCaa < 1:2305231/239‑1 (MQ=255) ttGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAaca < 1:1563123/239‑1 (MQ=255) ttGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAaca < 2:411391/239‑1 (MQ=255) tGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAacac < 1:646209/239‑1 (MQ=255) cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGGGGTTTTTTTTCATTTTTCCGTGCACCGCGCAAGCCCGTTTAC‑TGGGTTTTAGT‑GGCTTTTTTTTTTTTTTTTCTACACCGttttt > 2:2043607/1‑236 (MQ=255) aTCACGAAAACCAGCTTACGTGGTGATGTGATTTACGTCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGt < 2:917858/238‑1 (MQ=255) aaaCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTa < 1:2030753/239‑1 (MQ=255) aCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg < 2:682070/239‑1 (MQ=255) cctCTTTCGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCt < 2:2231575/237‑1 (MQ=255) tgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCGCTCTCCGGGTAAGGGGTGGTTTTGTTTAATTTTTCCGTCTGTCCCGCAAGACTAGTATT‑AGGATTTATAT‑AGATTTTTTTTTTTTTTTTTCACACGGATGTGGGTCCTCCTACGCTACTTTCTGCttt > 2:2033576/1‑239 (MQ=255) tgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGTTTAGGGGTGTTTTTGTTCTATTTTTCAGTCAGCCCCGCAAGCCCGTTTTC‑AGGGTTTTTGTGGGTTTTTTTTTTTTTTTTTAAACCGGGTTTGGGTTCC‑CCTACGCTACTTTTTTCttt > 2:13581/1‑239 (MQ=255) gatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAAAATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGt < 2:2153712/238‑1 (MQ=255) atTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGgtg < 1:2329969/120‑1 (MQ=255) aTTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAg < 1:172382/238‑1 (MQ=255) ttGAACAGGGCTTCCCTGTTGCGCCGAAAGGACAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCTGGTAAAGTGTGtttttttt > 2:2329969/1‑115 (MQ=255) gAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:76075/239‑1 (MQ=255) aGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGGTTATTTTCACTTTTGCAGTCAGCCCCGAAAGCCTGTTATC‑TGGATTTTTGT‑GGGTTTTTTTTTTTTTTTTCCACCCGGTTGTGGTTCCTCCTACGCTACTTTCTTCTTTTTAGTTTCCGCAACGGAGCCt > 2:2070183/1‑237 (MQ=255) ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCGGGTAAGGGGGGTTTATGTTCAATTTTTCAGTCAGCCGCGGAAGCCTGTTTTT‑AGGGATTCACT‑GGGTTTTTTTTTTTTTTTGCAACACGGGTGTGGTTTCTCCTACGCCTCTTTTTGCTTTTTAGTTTGCGCCAAGGAGCCt > 2:642162/1‑235 (MQ=255) ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTAttttt < 2:1009515/173‑1 (MQ=255) ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTAttttt > 1:1009515/1‑173 (MQ=255) ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGTTTATGTTCAATTTTTCAGTCAGCCGCGAAAGCCTGTTATC‑AGGGTTTTTGT‑GGGTTTTTTTTTTTTTTTTCAACACGGTTGTGGTTTCTCCTACGCTACCTTCTTCTTTTCAGTTGCCGCAAAGTAGCCTGCtt > 2:1554284/1‑239 (MQ=255) gCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑Ag < 1:1445375/146‑1 (MQ=255) cTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCaa < 1:341379/176‑1 (MQ=255) ccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTc < 2:1396465/239‑1 (MQ=255) ttGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCAGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGtt > 1:1571366/1‑175 (MQ=255) ttGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCAGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGtt < 2:1571366/175‑1 (MQ=255) tGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGc < 1:642162/238‑1 (MQ=255) tGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGGTTATGTTCAATTTTGTAGTCAGCCGCGGAAACCTGGTATT‑AGGGTTTTAGT‑g > 2:1445375/1‑146 (MQ=255) gcgcCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTTAGGGGTGGTTTTGTTTCATTTTTCAGTCAGCCGCCAAAGGCTGGTTTC‑AGGGTTTTAGT‑GGTTTTTTTTTTTTTTTTGCAACACGGgtgtt > 2:341379/1‑175 (MQ=255) ccGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCGGTTAAGGGGGGTTTTTGTTCAATTTTTCAGTCAGCCGCGGAAGCCGGTTTTT‑AGGGTTTCTGT‑GGGTTTTTTTTTTTTTTTTCAAAACGGTTTTGGTTCCTCCTCCCCCCCTTTTTGTTTTTTCGTTTCCGCAACATAGCCTCGTTATCCTCACGccaaaa > 2:1417120/1‑234 (MQ=255) aaTTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTg < 1:1359764/239‑1 (MQ=255) tttATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGt < 1:1162731/192‑1 (MQ=255) aaCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCCGTTTAGGGGTGTTTATTTTTAATTTTTCAGTCAGCCGCGAAAGCCTGTCTTC‑AGGGGTTTAGT‑GGTTTTTTTTTATTTTTTGCAACCCGGTTGTGGTTTCTCCTTCGCTACTTTCTGCTTTTTATTTGCCGCTAAg > 2:1162731/1‑192 (MQ=255) aTCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCcgcg < 1:383391/92‑1 (MQ=255) aTCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTg < 1:88139/100‑1 (MQ=255) agcagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGttt < 1:787146/64‑1 (MQ=255) cagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGc < 1:525181/92‑1 (MQ=255) cagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAaca < 1:1353831/135‑1 (MQ=255) aTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGATTTTTCCGTTAAGGGGTGTTTATGTTTAATTTTGCAGCCAGCCGCGAAAGCCCGTTTTT‑AGGAt > 2:88139/1‑100 (MQ=255) aTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCcgcg < 1:1348595/82‑1 (MQ=255) aTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCt < 1:1955503/115‑1 (MQ=255) aTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg < 1:1163482/150‑1 (MQ=255) aTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGTGTTTATTTTCAATTTTGCAGTCAGACGCGCAAGGCTGtt > 2:383391/1‑92 (MQ=255) gCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCGGTTAAGGGGGGTTTTTGTTTAATTTTGCAGTCCGCCCCGAAAGCCTGTTATC‑AGGGTTTCAGT‑GGGTTTTTTTTTTTTTTTTCAACACGGGTGTggg > 2:1353831/1‑134 (MQ=255) gCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGGTAAGGGGGGTTTATGTTCAAATTTGCAGACAGCCGCGGAAGCCTGTTTTC‑Ag > 2:525181/1‑92 (MQ=255) tGCAATGCCCGTCCTTGCGGCGGGCATTTTCCCGTTTAGGGGGGTTTTTGTTTCATTTTTTCGTCAGCCGCGAAAGGCTGTTATT‑AGGGTTTTTGT‑GGTTTTTTTTTTTTTTTTTCTACACGGGTGTGGGTCCTCCTACCCTTCtttttt > 2:1163482/1‑147 (MQ=255) tGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTcctcct < 1:1985016/137‑1 (MQ=255) tGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATg < 1:2151066/195‑1 (MQ=255) tGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGGGTTTTTGTTCAATTTTTCAGTCAGCCGCGGAAGCCTGtt > 2:1348595/1‑82 (MQ=255) tGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGGTTAGGGGGGGTTTTGTTCAATTTTTCAGTAAGGCGCGGAAGCCTGTTATC‑AGGAATTTAGG‑GGGTttttttttttttttt > 2:1955503/1‑114 (MQ=255) gtaaTGTCCGTCCTTGCGGCAGGCATTCTCCGGTTAAGGTGTGTTTATGTACAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTACATT‑GGTTTTTCTTTATTTTTTGCAaca < 1:940753/117‑1 (MQ=255) aaTGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGt < 2:819904/239‑1 (MQ=255) cccGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg < 1:1535864/133‑1 (MQ=255) cccGTCCTTGCGGCGGGCATTCTCCCGTTAAGGGGGGTTTTTGTTCACTTTTGCTGTCCGCCCCGAAAGCCTGTTATC‑AGGATTTCCGT‑GGTTTTTCTTTTTTTTTTTCAAAACGGGTGTGGTTTCTCCTACGCTACTTTTTTCTTTTTCTTTTCCGCCAAGTAGCCTGCTTATGCCCACGCAATATGCTTTTCTTGCTTCCGCACCGGACTGCTTCTCTCAGGCGttttttggt > 2:550555/1‑230 (MQ=255) ccGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcg < 1:2246938/239‑1 (MQ=255) gTCCTTGCGGCGGGCATTCTCCGGGTTAGGTGTGGTTTTGTTTAATTTTTCCGTCCGCCGCGGAAGCCTGTTATC‑CGGATTTTAGG‑GGTTTTTTTTTTTTTTTTTCAACACGGTTGTGGTTTCTCCCTCGCTACTTTTTTCTTTTTTGTTGCCGCAAAGTAGGCTGCTTTCGCCCACGCACAATGCTTTTTTTGc > 2:2151066/1‑195 (MQ=255) tCCTTGCGGCGGGCATTCTCCGGGTAAGGGGTGTTTTTGTTTAATTTTTTCGTCAGCCGCGAAAGCCTGTTTTC‑AGGTTTTTAGT‑GGGTTTTTTTTTTTTTTTTCAACACGGTTGTGGTTCCTCCTAAGCCACTTTTTTCTTTTTAGTTTCCGCAAAAGAGCCTGCTTTCGCCCACCCCATATGCTTTTTTTTCTACCGCACCGGCCCGCCTTGCCCAGGGGTGTTGTGGGCaactgc > 2:1605205/1‑233 (MQ=255) ccTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCt < 2:1386969/67‑1 (MQ=255) ccTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCt > 1:1386969/1‑67 (MQ=255) ccTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:544505/161‑1 (MQ=255) ccTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:2167448/238‑1 (MQ=255) cTTGCGGCGGGCATTCTCCGGTTAAGTTGTTTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GTTTTTTCTTTATTTTTTTCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCTTTTTGCGGTCATCGTcgcg < 1:1725213/239‑1 (MQ=255) cTTGCGGCGGGCATTCTCCGGTTAAGGTGTTTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:1605205/239‑1 (MQ=255) cTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:1417120/239‑1 (MQ=255) cTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:13581/239‑1 (MQ=255) cTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:550555/239‑1 (MQ=255) cTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:2070183/239‑1 (MQ=255) cTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:2093567/239‑1 (MQ=255) cggcggGCATTCTCCGGGTAAGGGGGGGTTTTGTTCCATTTTTCAGTCAGCCGCGCAAGACTGTTTTC‑AGGATTTTTGT‑GGGTTTTTTTTTTTTTTTTCAACACGGTTGTGGTTCCTCCTAAGCTACTTTCTg > 2:1535864/1‑133 (MQ=255) ggCATTCTTCGGGTAAGGGGGGTTTTTGTTTAATTTTGCAGGCAGCCGCGAAAGCCTGTTTTC‑AGGATTTTTGT‑GGGTTTTTTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTCCTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTTTTTCTTCCCCCCTGGGCCGCTTCGCTCAGGGGTTTTGCGGGCAGCGTCGCGCTTTTTTgg > 2:166485/1‑239 (MQ=255) ggCATTCTCCGGTTTAGGGGGGTTTTTGTTCAATTTTTCAGTCAGCCGCGAAAGCCTGTTTTC‑AGGATTTTAGT‑GGTTTTTTTTTTTTTTTTTCAACACGGTTGTGGTTCCTCCTACGCTACTTTTTGCTTTTTAGTTGCCGCCAAGGAGCCTGCTTTCGc > 2:544505/1‑161 (MQ=255) ttCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg > 1:879870/1‑226 (MQ=255) ttCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 2:879870/226‑1 (MQ=255) ggTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAgg > 2:1836918/1‑239 (MQ=255) ttAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGt > 2:1274589/1‑238 (MQ=255) gtgtgtTTATGTTCAATTTTGCAGTCAGCCACGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg > 2:532289/1‑101 (MQ=255) gtgtgtTTATGTTCAATTTTGCAGTCAGCCACGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg < 1:532289/101‑1 (MQ=255) | TATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGT > NC_000913/540335‑540789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |