| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 93.2% | 311.0 / 9.0 | 73 | pseudogene (2/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (0/5); new base . (51/17); total (51/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 97.1% | 308.8 / 0.5 | 73 | pseudogene (1/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base . (51/17); total (51/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.08e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCACCCCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCA > NC_000913/2173125‑2173599 || aTTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATaccac < 1:344063/237‑1 (MQ=255) gccgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATaccaccgccgt > 1:845666/1‑234 (MQ=255) cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGt > 1:1500257/1‑238 (MQ=255) ggggTGGGCAACCCAATAGTTGGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACCCCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCTACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTccc < 1:64731/236‑1 (MQ=255) tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGcc > 1:1319003/1‑239 (MQ=255) tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGAATCAAGGcc > 1:784165/1‑239 (MQ=255) cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGcc > 1:1434388/1‑237 (MQ=255) cgcgATCCACGGGGTGATGCCAATAATAGTGACCCCCGAGATAAAGGCGCGGAAAAGTTTCCCACGATGCAGGGCGCCCGCCATCGCCACGAAGAAGCCGATGGGGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAACCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATc < 2:1319003/238‑1 (MQ=255) cgATCCTCATAAGGATGCCCCCCGAGATGAAGGTGTGAAGCAGATTCCCACGATGCACGGCGACCGCCATCTCCACGAAGAAGCCGATGGTGGCAAGACCGCCAAACGGCAGCCCCTGATTACCCGGCACACAAACAGCAATTAAAATGTTGAGTGGTATAAAAATCA‑GCCTGGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGAt < 2:1239734/212‑1 (MQ=255) gATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGCAACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccg > 1:1562807/1‑238 (MQ=255) gATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccg > 1:20357/1‑238 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg > 1:422891/1‑239 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg > 1:234318/1‑239 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGGGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAAAGCCGGATCAAGGCCAATCCGGAACTCCTGAccgccg > 1:1109659/1‑239 (MQ=255) aaTGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAt > 1:1239734/1‑213 (MQ=255) gatgaCACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGGGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTACGTCCCAGCAGAAACGCCGGATCAAGACCAATCAGGAACGCCACACCGCCGAACATCg > 2:914969/1‑236 (MQ=255) gccacCCGAGATTAAGGTGCGGAACAGATTACCACGATGCACGGCGCCCGCCATCGCCAGGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTa < 1:1735740/237‑1 (MQ=255) ggTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAg > 1:1516711/1‑236 (MQ=255) cGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCtt > 1:1300677/1‑239 (MQ=255) agtttaccACAAGGCACGCCGCCCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCAAAACGGCAGCCCCGGATTACCCGGCACACAAACAGCAATAAAAATGGTGAGGGGAAAAAAAATCA‑GGCTGGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt < 2:422891/233‑1 (MQ=255) cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCa < 1:1435463/173‑1 (MQ=255) cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCa > 2:1435463/1‑173 (MQ=255) cgcgCGACCGCCCTCGCAAGGAGGACCCCGAGGGGGGCAAGACCTCAAAGGGGCAGCGCCTGATACCCCGTCACACAACCAG‑AATGAAAAGTGGGAAGGGGGTAAAAAGCAGGGCTGGCCGATAC‑‑CGCCGCC‑GTAGGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAccatc < 2:1562807/236‑1 (MQ=255) gccaccATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgat > 1:1849847/5‑239 (MQ=255) ccGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAg < 1:1602034/163‑1 (MQ=255) ccGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAg > 2:1602034/1‑163 (MQ=255) cGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAc > 1:953601/1‑221 (MQ=255) agaagCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa > 1:609648/1‑212 (MQ=255) gCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGGGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTACTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCa > 1:40840/1‑239 (MQ=255) tgggggAAAGATCGCCAAACGGCAGCACCTAATTCCCCGGCCCACAAACAGAAATTAAAAGGGGGAGTGGGAAAAAAATCA‑GGCTGGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTag < 1:556250/238‑1 (MQ=255) gCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCg > 1:1053872/1‑186 (MQ=255) gCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCg > 1:815769/1‑186 (MQ=255) gCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCg > 2:312635/1‑216 (MQ=255) gCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCg < 1:312635/216‑1 (MQ=255) cAAACGGCGGACCCTGATTACCCGGAACACAAACGACAATAAAAATGGTGAGTGGCATAAAAACCA‑GGCTTGCCGACAC‑‑CGCCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCa < 2:1745496/119‑1 (MQ=255) aaCGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGc > 1:723762/1‑216 (MQ=255) aaCGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGt > 2:338216/1‑239 (MQ=255) caCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACt > 1:1745496/1‑119 (MQ=255) ccTGATTCCCCGGCCAAAAAACAGAAATTAAAAGGGTGAGTGGGAAAAAAACCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGcc < 1:1588191/239‑1 (MQ=255) ccTGATTCCCCGGCACAAAAACAGAAATAAAAAGGGTGAGGGGAAAAAAAATCA‑GGCTTGCCGA‑ACC‑CCCCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGcc < 1:59507/239‑1 (MQ=255) cttaTTCCCGGGCAAAAAAAAAACAATTAAAATGTTGAGGGGGAAAAAAACCA‑GGCTTGCCGATCCCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatga < 2:734458/182‑1 (MQ=255) atgaccggccacaaaAACGGCAAGAAAAAGGGGGAGTGGAATAAAAAACG‑GGCTTGCCAATCCCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgat < 2:1107513/174‑1 (MQ=255) ttccccGGCACACAAACAGCAATAAAAATGGTGGGTGGGAAAAAAATCA‑GGCTGCCCG‑‑ACCCCCCCGCC‑GTATGTCCCAGCAGCACCGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 2:290956/146‑1 (MQ=255) cccGGCCCCCAAACAGCAATTAAAAGGGTGGGTGGGATAAAAATCA‑GGCGTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGc < 2:1725157/86‑1 (MQ=255) cGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAAt > 1:1023148/1‑238 (MQ=255) ggCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAt > 1:734458/1‑185 (MQ=255) ggCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTa > 1:134259/1‑223 (MQ=255) ggCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATa > 1:1399517/1‑238 (MQ=255) ggCACACAAACAGCAATTAAAATGGTGAGGGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCAGCCGTTTTTACCGCCAGCTGCAATaa > 1:1967867/1‑238 (MQ=255) cacacaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATaca > 1:1301620/1‑238 (MQ=255) acacaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAACCGACTACGAGCCTGCTTAGCg > 1:2021739/1‑150 (MQ=255) acacaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATc > 1:1107513/1‑183 (MQ=255) acacaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGCAAACGACTACGAACCTGCTTAGCGATGGGCGTTACACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATAAATGCCGCCGTTTTTACCGCCAGCCGCacacacca > 2:1029398/1‑232 (MQ=255) acacaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGAAACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCCTAGCGATGGGCGTTAAACCATCCATGATGGGTCTAATCACACGTGGCATTATCAGCATCACTACCGCCGTTTTTACCGCCAGCTGCAATaat > 2:237212/1‑235 (MQ=255) cacaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCg > 1:290956/1‑149 (MQ=255) aaaCAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCcagcag > 2:1865728/1‑70 (MQ=255) aaaCAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCcagcag < 1:1865728/70‑1 (MQ=255) aaaCAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GGATGTCCCAGCAGCAACGCCGGATCAAgg > 1:1725157/1‑86 (MQ=255) cAATAAAAATGGGGAGGGGGATAAAAACCA‑GGCTTGCCGATCCCA‑‑CCGCC‑GTATGCCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt < 2:112036/142‑1 (MQ=255) aaTTAAAAGTGGGAGGGGGAAAAAAAACC‑GGGCTTCCGA‑ATCCCACCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc < 2:1165167/177‑1 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATaccac < 1:914421/44‑1 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATaccac > 2:914421/1‑44 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGc < 1:108285/110‑1 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGc > 2:108285/1‑110 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGc > 1:1239804/1‑180 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTa > 1:1886907/1‑239 (MQ=255) ggTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa > 1:112036/1‑142 (MQ=255) ggTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTag > 1:1165167/1‑177 (MQ=255) ggTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCACTAAACCCTTGACATCGTAACCcgcca > 2:2114865/1‑237 (MQ=255) gTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATggg > 2:691764/1‑155 (MQ=255) gTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATggg < 1:691764/155‑1 (MQ=255) aGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGAt > 1:501298/1‑239 (MQ=255) aGTGGGATAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGAt > 1:133014/1‑239 (MQ=255) tAAAAATCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATa > 1:1055517/1‑239 (MQ=255) aaaTCA‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATAGTAACCAGCGAGGCTGCCGATAAta > 1:1699733/1‑238 (MQ=255) a‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcc > 1:284868/1‑238 (MQ=255) a‑GGCTTGCCGATACCA‑‑CCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGAAACCCGCGAGGATGCCGATAATCAGcc > 1:1853683/1‑238 (MQ=255) cgcttagccaacaccCCGCCGGTATGCCCCGGCACAACCCCCGGATCAAGGCCATCCAGAACCTCCGGCCCGCCGACCTTCCCCTGTAAACGACTACGAGCCTGCTTGGCGGTGGGCGTTAACCCAGCCATGAGGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGccc < 2:1516711/228‑1 (MQ=255) ccccGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCa < 1:2114865/239‑1 (MQ=255) || ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCA‑GGCTTGCCGATACCACCCCGCC‑GTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACCCA > NC_000913/2173125‑2173599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |