| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 540,558 | 0 | T | G | 26.1% | 194.6 / 19.1 | 88 | intergenic (+50/‑7) | allB/ybbY | allantoinase/putative uracil/xanthine transporter |
| Reads supporting (aligned to +/- strand): ref base T (12/53); new base G (23/0); total (35/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.59e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGC > NC_000913/540341‑540792 | cTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑CTC‑TCCGGTGAAGGGGGGTTTAGTTTCAATTTTGCa > 1:373843/1‑239 (MQ=255) aCCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGGCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGCC‑ATC‑TCCGGTT‑AGGGGTGTTTTGTTTGAAttttttcagt > 2:352632/1‑233 (MQ=255) tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTCTTCCGGTT‑AGGGGTGGTTCTGTTTCATTTTTCCGTCAGcc > 2:239287/1‑238 (MQ=255) cGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCcgcg < 1:239287/238‑1 (MQ=255) gCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGGA‑TGC‑TCCCGGTCAGGTGTGGTTATTTTTAAATTTGCGCTCAGCCCCG‑AAAACCCGATATCACGAATTCACTGGt > 2:155411/1‑239 (MQ=255) ccGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGtt < 1:961543/238‑1 (MQ=255) tATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCt < 1:1158532/214‑1 (MQ=255) tATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGGTAAGGGGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTTAGTGGtttt > 1:2113173/1‑237 (MQ=255) ggCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAg < 1:2006751/192‑1 (MQ=255) ggCCGTACCATTGGCGCGCGTATACCGAAACCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTAtt < 2:2113173/239‑1 (MQ=255) gTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTCATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCAGTTT‑TCCGGTT‑TGGTGTGGGTTTGTTTAATTTTTTAGTCGGGCGCGCAAAGCC‑GTTAttcgga > 2:1158532/1‑209 (MQ=255) tACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGGTTAGGGGTGGTTATGTTCAATTTTGCAGTCAGGCGCG‑AAAGCCTGGTATCAGGATTTTCGTGGtttttttttttttttt > 1:87545/1‑238 (MQ=255) tACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCCGTTAAGGGGGGTTTATGTTCAATTTTGCAGTTAGCCCCG‑AAAAACTGTTATCAGGATTTCCGGGGTTTTTCTTTTTTTTTTg > 1:1192130/1‑239 (MQ=255) aCCATTGGCGCGCGTATCCCGAAAACCATCTTACGTGGTGATGTGATTTACGACAGTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGc < 1:1244139/239‑1 (MQ=255) cATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGGTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTAtt < 1:564526/231‑1 (MQ=255) ttGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑CTC‑TCCCGTGAAGGTGTGTTTATGTTTAATTTTTCAGTCAGCcgcgc > 2:2006751/1‑191 (MQ=255) tGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAacac < 1:1614958/239‑1 (MQ=255) tGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAacac < 1:1080911/239‑1 (MQ=255) gcgcgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACTGtt < 1:388727/239‑1 (MQ=255) gcgcgTATCACGAAAACCATCGTACGTGGTGATGTTATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCATCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTGCAGTGGTTTTTCTTTATTTTTTGCAACACGGtt < 1:433849/239‑1 (MQ=255) cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTT‑TCCGGGTATGGGGTGGGTATGTTTAATTTTTTAGTGTGCCGCG‑GAAGCCTGTTATCAGGAGTTCTGTGGGTTTTTTTTTTTTTTTGTAacacc > 2:564526/1‑232 (MQ=255) acaaCGAACACCATCTTACGTGGTTATGTGATTTACGACATTGAACATGGCTTCCCTGTTGCGCCGAAAGGTCAAGTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTTCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGt < 2:1074984/235‑1 (MQ=255) aTCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGt < 2:1881923/238‑1 (MQ=255) aTCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGt < 1:137700/238‑1 (MQ=255) aCGGGGTGATGTGATTTTCGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTc < 1:122167/239‑1 (MQ=255) gtggtgATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTg < 1:1216775/239‑1 (MQ=255) ggtgATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGGGTGGTTATGTTCAATTTTGCAGTCAGCCGCG‑CAAGCCTGTTATTAGGGTTTTAGGGGGTTTTCTTTTTTTTTTTCAACCCGGTTTTGGTTTCTCCTCAGCCACTTTTTGCt > 2:1216775/1‑239 (MQ=255) tgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCcgcg < 1:535729/157‑1 (MQ=255) tgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTAt < 1:1810181/169‑1 (MQ=255) gtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCC‑TTC‑TCCTCGTTAGGGGTGTTTTTTTTCAATTTTGCCGTCAGCCCCC‑AAAGAGCGTTTTTCGGGTTTTTGTGGTTTTTTTTTTTTTTTTTCTACACGGGTGTGGGTTCTCCCACCCTCATTTTTTCtttttta > 2:168824/1‑236 (MQ=255) atTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑GAAGc > 1:1898461/1‑155 (MQ=255) atTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGc < 2:1898461/155‑1 (MQ=255) tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TTCGGTTGAGGTGTGTTTATGTTCAATTTTCAGGTCAGCCGCC‑GAAGACTTGTTTTTGGGTTTTAGTAGGTTTTTTTTATTTTTTGCAACACGGTTTTCGTTTCTCCTTCGCTGCTTTTTGCGTTTTAGGTGca > 2:164854/1‑237 (MQ=255) tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGGTACGGGGGGGTTATGTTTTATTTTTCAGGCAGCCACG‑AAAGCCTggt > 2:535729/1‑155 (MQ=255) tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCCGGTAAGGGGTGTTTTTGTTCAATTTTTCAGTCAGCCGCG‑CAAGCCTGTTATCAggtatttt > 2:1810181/1‑163 (MQ=255) gAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCC‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 2:1196293/239‑1 (MQ=255) gAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCa < 1:433330/232‑1 (MQ=255) gAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:1542610/239‑1 (MQ=255) gAAAAGGGCTTCCCTGGTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:1155712/239‑1 (MQ=255) aaCAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTtcc < 1:1001146/198‑1 (MQ=255) cTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTa < 1:669490/238‑1 (MQ=255) cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:993648/228‑1 (MQ=255) cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGGTTATGTTCAATTTTTCAGTCAGCCGCG‑AAAGCCTGGTATCCGGATTTCAGTGGTTTTTTTTTATTTTTTGCAACACGGTTGGGGTTCCTCCCACGCTa > 2:1001146/1‑198 (MQ=255) tGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATc < 1:461578/137‑1 (MQ=255) tGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGGGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATc > 2:461578/1‑137 (MQ=255) gTTCCGCCGAAAGTCCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACg < 2:373843/239‑1 (MQ=255) ccGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTTAGGGGTGTTTATTTTTAATTTTTCTGTCCGCCGCG‑CAAGCCTGTTTTCCGGGTTTTTGTTGGTTTTTTTTTTTTTTTTCTACACTGTTTTGGTTTCTCCTCCCCTTCTTTTTTCTTTTTTGTTTTCCCAAAATATACTTCTTTCGCTccttctcttt > 2:993648/1‑230 (MQ=255) aaaGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTc > 1:560652/1‑135 (MQ=255) aaaGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTc < 2:560652/135‑1 (MQ=255) aaTTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAaca < 1:789673/155‑1 (MQ=255) cTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTTCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCtttt < 1:310659/227‑1 (MQ=255) cTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa < 1:155411/239‑1 (MQ=255) cTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa < 1:1930245/239‑1 (MQ=255) tAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCCGTTTAGGGGTGTTTTTTTTCAATTTTTCAGTCAGCCGCG‑GAAGCCTGTTTTCAGGGTTTTTGTGGTTTTTTTTTTTTTTTTTCAACCAGGTTGTGGt > 2:789673/1‑155 (MQ=255) aCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGc < 1:426216/239‑1 (MQ=255) tCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGtt < 1:841252/144‑1 (MQ=255) cagcagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTT‑TCCCGTTTAGGGGGGTTTTTGTTCTATTTTTCAGTCTGCCCCG‑GCAACCCGTTTTCCGGGTTTTCGTGGTTTTTTTTTTTTTTTTTCAACACGGTTGTGGTTCCTCCTACCCCACTTTTTTCTTTTTCTTTTCCGCCAAGTATCCTGCTTTCGCTCACCCAATATGCTTTTCTTGTTTCCCCACCGGCCt > 2:649056/1‑237 (MQ=255) agcagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑ATC‑TCCCGTTAAGGGGGGTTTATGTTCCATTTTGCAGGCCGCCGCG‑AAAGCCTGTTTTCAGGGTTTCTGTGGTTTTTTTTTATTTTTTTCAACACGGGTTGGGTTTCTCCTACGCTCCTTTCTGTTTTTTAGTTTCCGCACAGGAGCCTGTCTACGCTCACCCAATATGCTTTTCTTTCTCCCGcccagccctcg > 2:1494723/1‑228 (MQ=255) cagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTAt < 2:682266/99‑1 (MQ=255) tactCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCt < 1:291931/193‑1 (MQ=255) aaTCTGGCCCCTGCAGTGCCCGGCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCCCGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCt < 2:1192130/238‑1 (MQ=255) aTCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGcc < 1:473803/173‑1 (MQ=255) aTCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAACCTGTTATCAGGATTTCAGTGGTTTTTCTTTAtt < 2:1072967/120‑1 (MQ=255) tCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGGGGGGTTTTGTTCAATTTTGGAGTCCGCCGCG‑AAAGCCTGTTTTTAGGATTTTAGTGGGTTTTCTTTATTTTTTTCAACACGGTTTTGGGttctc > 2:841252/1‑144 (MQ=255) gCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCT‑TTT‑CCCGGGTAAGGGGGGTTTATTTTTAATTTTGCAGGCACCCCCG‑AAAGCCCGTTTTCACGATTTCa > 1:682266/1‑99 (MQ=255) gCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑a > 1:1483528/1‑78 (MQ=255) gCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑a < 2:1483528/78‑1 (MQ=255) cccTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:1784842/176‑1 (MQ=255) ccTGCAATGCCCGTCCTTGCGGC‑GGGCC‑TTC‑TCCGGGTAAGGGGTGTTTATTTTCAATTTTGCAGTCTGCCGCG‑GAAGCCTGTTATCTGGGGTTCAGTGGTTTTTCTTTATTTTTTTCAACACCGGTGGGGGTCCTCCTCCGCTCCTTTCTTCTTTTTTGTTTCCGCCAAGTAACCTGCTTTCTCTCACGCCatat > 2:291931/1‑196 (MQ=255) tGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCt < 1:357228/202‑1 (MQ=255) tGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGCTTAGGGGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTTAGTGGTTTTTTTTTTTTTTTTGCAACACGGTTGTGGGTCCTCCTACGCTACTTTCTTTTTTTTAGTTGCCGCCCAGTAGc > 2:473803/1‑173 (MQ=255) tGCAATGCCCGTCCTTGCGGC‑GGGCA‑ATC‑TCCGGGTAAGGTGTGTTTTTGTTCAATTTTTCATTCAGCCGCG‑AAAGCCTGTTATTTGGATTTCTGAGGttttttttttttttttttcaaa > 1:1072967/1‑114 (MQ=255) cAATGCCCGTCCTTGCGGC‑GGGCC‑TTG‑TCCGGGTTATGGGTGGTTTTGTTCTATTTTTCTGTCCACCGCC‑ACAGCCCTTTTTCAGGATTTCAGTGGGTTTTCTTTATTTTTTTCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTTCTTTTCCGTTTCCGCAAAATAGCCTGCTTACGCTCACGCAATATGCTTTTTTTTCCTCCTCCCTGGCCTGCTTCTCTCAAGCGgttt > 2:31503/1‑235 (MQ=255) gTCCTTGCGGC‑GGGCA‑TTC‑TCCGGGTAAGGGGTGTTTATGTTCAATTTTGCAGTCCGCCGCG‑AAAGACTGTTTTCAGGGTTTTAGTGGGTTTTTTTTTTTTTTTTCAACACGGGTGTGGTTCCTCCTACCCTACTTTTTGCTTTTTAGTTTCCGCAAAGTAGCCTGCTTTCGCTCCCGCAATATGCTTTTCTTTCTACCCCa > 2:357228/1‑202 (MQ=255) tCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATGTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:624676/239‑1 (MQ=255) cctgtgcgc‑ggGAA‑TTC‑TCCGGTTAAGGTGTGTTTATTTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGTTTGTGGTTCCTCCTACGCTCCTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 2:938375/231‑1 (MQ=255) ccTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:168824/238‑1 (MQ=255) cTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:817608/239‑1 (MQ=255) cTTGCGGC‑GGGCA‑TTC‑GCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:587560/239‑1 (MQ=255) ggCA‑TTC‑TCCGGTTTAGGGGTGTTTATGTTCAATTTTGCAGTCCGCCCCG‑GAAGCCTGTTATCAGGATTTTTGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCCCTTGCCGCCAAGTAGCCTGCTTACGCTCCCGCACTATGCTTTTCTTGCTACCGCCCTCGCCTGCCTCGCTCACGCGGTTTGTGGTCCtcg > 2:2003509/1‑225 (MQ=255) a‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGaa < 1:1827261/238‑1 (MQ=255) ggTTAAGGTGTTTTTATGTTCAATTTTGCAGTCAGCCNNG‑aa < 2:1510885/42‑1 (MQ=255) aaGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGTTTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATg > 2:1285166/1‑159 (MQ=255) aaGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATg < 1:1285166/159‑1 (MQ=255) aaGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGc < 1:352632/239‑1 (MQ=255) aGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg > 2:37313/1‑213 (MQ=255) aGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:37313/213‑1 (MQ=255) aGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTgg > 1:1201722/1‑237 (MQ=255) | CTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGC‑GGGCA‑TTC‑TCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCG‑AAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGC > NC_000913/540341‑540792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |