BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503	1979278	776	109 [1]	[0] 109	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	1 (0.010)	101 (0.990)	78/280	0.2	99.5%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	101 (0.990)	78/280	0.2	99.5%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 109 total aligned reads displayed.

GATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAA  >  NC_000913/1979134‑1979427

aatgggtctttacccttatccaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                                    <  1:9447‑M2/4‑1 (MQ=255)

  tgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaatgacgtaacataaatgTATAAg                                                                                                                                                  <  2:395539‑M2/6‑1 (MQ=255)

   gggtctttacacttaactaagatttttccgaaatcgacgcaattgtactcgtcactacacgcacatacaacggagggtggctgcgactttcaataatgcgtgatggagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                                 <  2:81495‑M2/7‑1 (MQ=255)

      tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacttaaataTGTAAGTCAt                                                                                                                                              >  1:1559162‑M2/140‑149 (MQ=255)

       ctttacacttatctaagatttttcctaaatcgacgcaactgtacacgtcactacacgcacagacaaaggaggggggctgcgaatttcaataatgcgtgatgaagatcacacaaaacactcaattacttaacataaatgTATAAGGCAT‑a                                                                                                                                            >  2:604089‑M2/139‑149 (MQ=255)

        tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaagggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑Ac                                                                                                                                           >  1:472175‑M2/138‑149 (MQ=255)

         ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGCCAT‑ACt                                                                                                                                          >  1:1344032‑M2/137‑149 (MQ=255)

           acacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttatcataaatgTATAAGTCAT‑ACttt                                                                                                                                        >  2:1119685‑M2/135‑149 (MQ=255)

            cacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACtttt                                                                                                                                       <  1:1643091‑M2/16‑1 (MQ=255)

              cttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACttttgt                                                                                                                                     <  2:2946‑M2/18‑1 (MQ=255)

               ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaccataaatgTATAAGTACT‑ACttttgtt                                                                                                                                    >  1:57850‑M2/131‑149 (MQ=255)

               ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACttttgtt                                                                                                                                    >  1:15741‑M2/131‑149 (MQ=255)

                  tctaagattttccccacatcgacgcaactgtactcgtaactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataagtgTAGAAGTCAT‑ACttttgttttg                                                                                                                                 <  2:559918‑M2/22‑1 (MQ=255)

                   ctaagatttttcctgaatcgacgcaactggactcgtcactacacgcacatacaacggagggcggctgcgattttcaatattgcttgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTgg                                                                                                                                <  2:201463‑M2/23‑1 (MQ=255)

                   ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTgg                                                                                                                                <  1:1630838‑M2/23‑1 (MQ=255)

                    taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTggg                                                                                                                               >  2:1385683‑M2/126‑149 (MQ=255)

                     aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaccggaggggggctgcgattttcaataatgcgtgatgcagatcacacaacacactcaattacgtgacataaatgTATAAGTCATAATTTTTGTTTtggt                                                                                                                               >  1:65863‑M2/125‑148 (MQ=255)

                     aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGgt                                                                                                                              >  1:1642411‑M2/125‑149 (MQ=255)

                     aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattctcaataatccgtgatgcagatcaaacaaaacactcaattacttaacataaaagTAAAAGTCAT‑ACTTCTGTTttggtg                                                                                                                              >  2:79070‑M2/125‑147 (MQ=255)

                       gatttttcctaaatcgacgcaactgtactcgtcactacacgcgcatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGgtgt                                                                                                                            <  2:1011731‑M2/27‑1 (MQ=255)

                         tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGTTGTAt                                                                                                                          >  2:1206766‑M2/121‑149 (MQ=255)

                           tttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTAttt                                                                                                                        <  1:1494128‑M2/31‑1 (MQ=255)

                            ttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTc                                                                                                                       >  1:1035821‑M2/118‑149 (MQ=255)

                             tcctaaatctacgcacctgtacgcgtcactacacgcccatacaacggagtggcgctgcgattttcaataatgcgtgatgcagctcacacaacactctcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCa                                                                                                                      <  2:1710480‑M2/33‑1 (MQ=255)

                               ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAAt                                                                                                                    <  2:1687226‑M2/35‑1 (MQ=255)

                               ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAAt                                                                                                                    <  1:1015292‑M2/35‑1 (MQ=255)

                                taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATc                                                                                                                   >  1:318568‑M2/114‑149 (MQ=255)

                                   atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                                >  1:1304052‑M2/111‑149 (MQ=255)

                                   atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGGTTTGGGTGTATTTCAATgtgt                                                                                                                >  1:1018574‑M2/111‑149 (MQ=255)

                                      gacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTaa                                                                                                             >  1:1770335‑M2/108‑149 (MQ=255)

                                      gacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTaa                                                                                                             >  1:607503‑M2/108‑149 (MQ=255)

                                       acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacagtcaattacttaacataaatgTATAACTCAT‑ACTCTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                                                                            <  1:1160239‑M2/43‑1 (MQ=255)

                                         gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                          <  1:1420920‑M2/45‑1 (MQ=255)

                                           aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAaga                                                                                                        >  1:1683805‑M2/103‑148 (MQ=255)

                                           aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTATTAAAAAGt                                                                                                        >  2:1749120‑M2/103‑149 (MQ=255)

                                            actgtacccgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                                                                                                       <  1:163351‑M2/48‑1 (MQ=255)

                                             ctgtactcgtcactaaacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                                      <  1:817310‑M2/49‑1 (MQ=255)

                                              tggactcgtcactacacgcccatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                                     <  1:1193563‑M2/50‑1 (MQ=255)

                                                tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                                   >  1:1649391‑M2/98‑149 (MQ=255)

                                                   tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                                <  2:943859‑M2/55‑1 (MQ=255)

                                                   tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTGTAAAAGTTTTTcgct                                                                                                >  1:449491‑M2/95‑149 (MQ=255)

                                                      tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                                                                             >  2:230823‑M2/92‑149 (MQ=255)

                                                      tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                                                                             >  1:48301‑M2/92‑149 (MQ=255)

                                                      tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                                                                             >  2:1498279‑M2/92‑149 (MQ=255)

                                                       cactacacgcacatacatcggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                                                                            <  1:919940‑M2/59‑1 (MQ=255)

                                                       cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                                                                            <  2:1463204‑M2/59‑1 (MQ=255)

                                                       cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                                                                            <  2:1463203‑M2/59‑1 (MQ=255)

                                                         ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcccacaaaacactcaattacttaacataaaggTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                          <  1:788587‑M2/61‑1 (MQ=255)

                                                         ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                          <  1:918707‑M2/61‑1 (MQ=255)

                                                           acacgcacatacaacggaggggggcggctattttcaataatgcgtgatgcagatcacacaaaacactcaattacgtaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                                        <  1:811950‑M2/63‑1 (MQ=255)

                                                            cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                                                                       >  1:1583939‑M2/86‑149 (MQ=255)

                                                             acgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                                      >  2:1337020‑M2/85‑149 (MQ=255)

                                                                         cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTACTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                          <  2:405118‑M2/77‑1 (MQ=255)

                                                                           gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAATTGAAacg                                                                        >  1:1729653‑M2/71‑148 (MQ=255)

                                                                            ggggtggctgcgattttcaataatgcgtgatgcagatcacacaaaaccctcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                                       <  1:16533‑M2/80‑1 (MQ=255)

                                                                             ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGGGTATTTCAATCTGTTAAAAAGTTCTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                                                                      >  1:1645316‑M2/69‑149 (MQ=255)

                                                                              gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                                     <  1:1265542‑M2/82‑1 (MQ=255)

                                                                               ggggccgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaa                                                                    <  1:451297‑M2/83‑1 (MQ=255)

                                                                                   ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                                <  2:1642411‑M2/87‑1 (MQ=255)

                                                                                   ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                                >  1:1071405‑M2/63‑149 (MQ=255)

                                                                                      cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa                                                             >  1:477371‑M2/60‑149 (MQ=255)

                                                                                       gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa                                                            >  1:1356288‑M2/59‑149 (MQ=255)

                                                                                          tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                                         <  2:1405661‑M2/94‑1 (MQ=255)

                                                                                            tcaataatgcgtgatgcagatcacacaaaacactcatttacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                                       <  1:959726‑M2/96‑1 (MQ=255)

                                                                                            tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                                       >  1:598854‑M2/54‑149 (MQ=255)

                                                                                            tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                                       <  2:477371‑M2/96‑1 (MQ=255)

                                                                                              aataatgcgtgattcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                                     <  1:1346146‑M2/98‑1 (MQ=255)

                                                                                              aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                                     >  1:723529‑M2/52‑149 (MQ=255)

                                                                                               ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg                                                    >  1:1493645‑M2/51‑149 (MQ=255)

                                                                                                  atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGAGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTg                                                 >  1:637167‑M2/48‑149 (MQ=255)

                                                                                                    gcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg                                               >  2:182083‑M2/46‑149 (MQ=255)

                                                                                                      gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca                                             <  1:1521007‑M2/106‑1 (MQ=255)

                                                                                                        gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                           <  2:281584‑M2/108‑1 (MQ=255)

                                                                                                         atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                          >  1:384292‑M2/41‑149 (MQ=255)

                                                                                                           gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGAGATGTTGCGCACAGTc                                        >  1:1777180‑M2/39‑149 (MQ=255)

                                                                                                              gatcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                                     <  1:559131‑M2/114‑1 (MQ=255)

                                                                                                                tcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAGTCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATAGGATGTTGCGCACAGTCAACAt                                   >  2:1039274‑M2/34‑149 (MQ=255)

                                                                                                                tcacacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                                   >  1:244337‑M2/34‑149 (MQ=255)

                                                                                                                  acacaaaacactcaatgacttaacataaatgTATAAGTCAG‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                                 <  2:1202158‑M2/118‑1 (MQ=255)

                                                                                                                   cacaaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAAc                                >  2:1670357‑M2/31‑149 (MQ=255)

                                                                                                                      aaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGGGCACAGTCAACATAAATCa                             >  2:878034‑M2/28‑149 (MQ=255)

                                                                                                                      aaaacactcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                             >  1:515824‑M2/28‑149 (MQ=255)

                                                                                                                           actcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa                        >  2:1370822‑M2/23‑149 (MQ=255)

                                                                                                                             tcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa                      >  1:572024‑M2/21‑149 (MQ=255)

                                                                                                                             tcaattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa                      <  2:119567‑M2/129‑1 (MQ=255)

                                                                                                                              caattacttaaccgaaaggTATAAGTCAT‑ACTTTTGGTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAATATAACTCACCGTAaat                     <  1:1116128‑M2/130‑1 (MQ=255)

                                                                                                                              caattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat                     <  1:422612‑M2/130‑1 (MQ=255)

                                                                                                                               aattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata                    >  1:10754‑M2/19‑149 (MQ=255)

                                                                                                                               aattacttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata                    >  1:77955‑M2/19‑149 (MQ=255)

                                                                                                                                    cttaacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTCTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAACTAACTCACCGTAAAATatcat               >  2:578062‑M2/14‑149 (MQ=255)

                                                                                                                                       aacataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg            <  2:1649391‑M2/139‑1 (MQ=255)

                                                                                                                                       aacataaatgTATAAGTAAT‑ACTTTTGTGTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAGCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg            <  2:1162741‑M2/139‑1 (MQ=255)

                                                                                                                                        acataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc           <  1:1337020‑M2/140‑1 (MQ=255)

                                                                                                                                         cataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGATACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAATTGGGATGTGACGCACAATCAAAATAACTCACCGTAAATAATCAACAGCt          >  1:600993‑M2/9‑149 (MQ=255)

                                                                                                                                          ataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATctacta         >  2:627375‑M2/8‑149 (MQ=255)

                                                                                                                                            aaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtata       >  1:203161‑M2/6‑149 (MQ=255)

                                                                                                                                            aaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtata       >  1:1063695‑M2/6‑149 (MQ=255)

                                                                                                                                            aaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAAAAAGCAAAAAGGAAACAGGAATAATCGAAATGGGATGTTGCGCAAAGGCAAAAAAACTCACCGTAAAAAATCATCTGCtata       >  1:58759‑M2/6‑149 (MQ=255)

                                                                                                                                             aatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAACAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataa      <  2:1356288‑M2/145‑1 (MQ=255)

                                                                                                                                                gTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaata   >  1:403212‑M2/2‑149 (MQ=255)

GATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAA  >  NC_000913/1979134‑1979427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`