New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3110532 =	51 (0.990)	3 (0.060)	3/254	NT	6.6%	intergenic (+93/+56)	pheV/yghD	tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein
	?	NC_000913	3110563 =	38 (0.800)					intergenic (+124/+25)	pheV/yghD	tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein

GAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGC  >  NC_000913/3110385‑3110669                                                                                                                                                    |                                                                                                                                            tgctgaaatggttaaacgcactggatgaaaaatatgcgctgcgggtgacacaaattgatgtcagtgctgctgagaagcctgggatggggaatgtgcagcggctggagtttggacgggggtaaagtatcaggagattaatatcaataaaa                                                                                                                                            <  1:235417‑M1/2‑1 (MQ=255)   ctgaaatggttaaacgcactggatgaaaaatatgcgctgcgggtgacacaaattgatgtcagtgctgctgagaagcctgggatggtgaatgtgcagcggctggagtttggaagggggtagcgcaccaggagattaatatcaataaAAtt                                                                                                                                          <  1:122621‑M1/4‑1 (MQ=255)    gaGGGGATTGAAAATCCCTGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTGATTCTTAAGAACCCGCCCACACGGCGGGTTTTTGCTGTTGTATCTGTCAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTa                                                                                                                                         <  2:731385/148‑1 (MQ=38)       gggATTGAAAATCCCCGTGCCCTTCGTTCGATCCCGAATCCGGGCACCAATAGCTCTTACGAACCCGCCCACAAGGCGGGTGTTTGCTGTGGGATCTGACAATAACCTCCACGACAAAAATTAGCCTATAACGGCTGGGGGACTTGctc                                                                                                                                      >  2:809246/1‑149 (MQ=25)               aaaTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑Cg                                                                                                                            >  1:364565/1‑149 (MQ=255)                    actggatgaaaaatatgcgctgcgggtgacacaaattgatgtcagtgctgctgagaagcctgggatggtgaatgtgcagcggctggagtttggacgggggtaaagtatcaggagattaatatcaataaAATTACTCTCG‑CCA‑CGTTAAc                                                                                                                       <  1:456500‑M1/21‑1 (MQ=255)                      cGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACga                                                                                                                     <  2:402152/149‑1 (MQ=255)                        tgtCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACgaga                                                                                                                   <  1:480228/149‑1 (MQ=255)                        tgtCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACgaga                                                                                                                   <  1:8337/149‑1 (MQ=255)                         tgccTTGTCTCGATTCCGCGTCCGGGCACCACTAAGTCTTAAGAACCGGCTCACAAGGCGGCTTTTTGCTTTTGCATCTGACAATAACCTTCACGAAAAGAAGTAGCTGATAAAGTCTGGGGGTATTACTCTCC‑CCA‑CGTTAACGagag                                                                                                                  <  2:218777/147‑1 (MQ=255)                            cTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTaa                                                                                                               >  1:312710/1‑149 (MQ=255)                             ttGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAACAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTCAt                                                                                                              >  1:838711/1‑149 (MQ=255)                                 ttCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTa                                                                                                          >  1:232899/1‑149 (MQ=255)                                 ttCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACACGCCCACAAGGCGGGTTTTTGCTTTTGCATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTa                                                                                                          <  2:310355/149‑1 (MQ=255)                                  ttgATTCCGAGTCCGGGCACCACTAATCCTTAAGAACCCGCCCACAAGGCGGGGTTTTGCTTTTGGATCTGACAATAACCTTAACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAt                                                                                                         <  2:805621/147‑1 (MQ=255)                                  tCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAt                                                                                                         <  2:145999/149‑1 (MQ=255)                                  tCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAt                                                                                                         <  1:516049/149‑1 (MQ=255)                                   cGATTCCGACTCCGGGCACCACTAATTCTTAAGCACCCGCCCACAAGGCGGGTTTTTGCTTTTGCATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAATTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAtt                                                                                                        <  1:125347/149‑1 (MQ=255)                                      ttCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTGGCTTATAAAGTCTGGGGGAATTACTCTGG‑CCA‑CGTGAACGAGAGTAATTTTATTGat                                                                                                     >  1:51530/1‑149 (MQ=255)                                            gTCCGGGCACCACTCATTCTGAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTATGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAAt                                                                                               <  1:628890/149‑1 (MQ=255)                                                   caccacTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGa                                                                                        <  1:491448/149‑1 (MQ=255)                                                   caccacTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTGTGCTTTTGGATCTGACAATAACCATCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGa                                                                                        <  2:159532/149‑1 (MQ=255)                                                        cTAATTCATAAGAACCGGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGCGAGTAATTTCATTGATATTAATCTCCTGATACtt                                                                                   <  1:462684/149‑1 (MQ=255)                                                                 aaGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGt                                                                          <  2:488795/149‑1 (MQ=255)                                                                     aCCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGGAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCACCTGATACTTTACCCCCGTCCaa                                                                      >  2:353492/1‑149 (MQ=255)                                                                          cccACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACTCCCGTCCAAACTcc                                                                 >  1:744080/1‑149 (MQ=255)                                                                            cacaAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAg                                                               >  1:723902/1‑149 (MQ=255)                                                                             acaAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCACACTCCAGc                                                              >  1:24823/1‑149 (MQ=255)                                                                                      gTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGcaca                                                     >  2:115453/1‑149 (MQ=255)                                                                                       tttttGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACAt                                                    <  1:741038/149‑1 (MQ=255)                                                                                          ttGCGTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAACTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAATGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCa                                                 <  2:597414/149‑1 (MQ=255)                                                                                           tGCTTGTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCAc                                                <  1:462110/149‑1 (MQ=255)                                                                                           gccTTTTCGATCTGACTATAACCTTCACGAAAAAAATTAGCTTATAATGCCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCAc                                                <  1:172422/147‑1 (MQ=255)                                                                                            gCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCAcc                                               >  1:528880/1‑149 (MQ=255)                                                                                            gCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCAcc                                               >  2:738179/1‑149 (MQ=255)                                                                                               tttGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCTCCATc                                            <  2:312710/149‑1 (MQ=255)                                                                                                ttGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGAGCATTAATCCCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATcc                                           >  1:627589/1‑149 (MQ=255)                                                                                                    agcTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAgg                                       <  2:616176/147‑1 (MQ=255)                                                                                                    aTCTGACAACACCCTTCAGTAAAAAAATTAGTTTATAAAGTCCGGGGAAATTACTCTCC‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTACTCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAgg                                       <  2:163854/149‑1 (MQ=255)                                                                                                           aaTAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTCCTca                                >  2:567447/1‑149 (MQ=255)                                                                                                           aaTAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAAAGAGAGTAGTTTTATTGTGATGACTCTCCTGCTACTATACCCCCCTCCAAACTCCACCACCTCCCACTTCACCATCCCAGGCCTCCca                                >  2:598009/1‑149 (MQ=255)                                                                                                              aaCCTTCACTAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAACCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTcagca                             <  2:136991/149‑1 (MQ=255)                                                                                                                 cTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAgcagca                          >  2:837114/1‑149 (MQ=255)                                                                                                                  ttCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATGTCCTGATACTTGACCCCCGTCCAAACCCCAGCCGCTGCACATTCACCATCCCAGGCTTCTTGGCAGCAc                         >  2:27903/1‑149 (MQ=255)                                                                                                                    cACGACGAAGATTAGCTTATAAAGTCTGGGGGAATTGCTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGTTATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTg                       <  2:76704/149‑1 (MQ=255)                                                                                                                    accGAAAAAAATGAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTg                       <  1:723099/147‑1 (MQ=255)                                                                                                                      cGAAAAAAATTAGCATATAAAGTCGTGGGGAATGACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGCTACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTTACCATCCCAGGCTTCTCAGCAGCACTGAc                     <  1:557517/149‑1 (MQ=255)                                                                                                                        taaagtatcaggagattaatatcaataaAATTACTCTCGTTAA‑CGTGG‑CGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCACAACCTCCTCAGCAGCCCCGACAt                   <  2:456500‑M1/121‑1 (MQ=255)                                                                                                                         aaaaaaTTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGGGAGTAATTTTATTGATATTAGTCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTAACCATCCCAGGCTTCTCTGCAGCACTGACATc                  >  2:281605/1‑149 (MQ=255)                                                                                                                             aaTTAGCTTATAAAGTATGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAAtt              <  2:144463/149‑1 (MQ=255)                                                                                                                               ttAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtg            <  2:581372/149‑1 (MQ=255)                                                                                                                                tAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtgt           <  2:528880/149‑1 (MQ=255)                                                                                                                                tAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtgt           <  1:738179/149‑1 (MQ=255)                                                                                                                                     tataAAGTCTGGGGGAATTACTCTAG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATATGTGTCAc      >  1:536683/1‑149 (MQ=255)                                                                                                                                       ttaatatcaataaAATTACTCTCG‑TTAACGTGG‑CGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCAccc    <  2:807032‑M1/136‑1 (MQ=255)                                                                                                                                       taAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCAAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCAccc    >  1:226218/1‑149 (MQ=255)                                                                                                                                         aaGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGCAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGCCCAAACTCCAGCCGCTGCCCATTCCCCCTCCCAGGCTTCTCAGCAGCACTGACACCAAATTTAGCCACCCGc  >  1:62793/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                            GAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGC  >  NC_000913/3110385‑3110669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.