| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3187424 | NA (NA) | 50 (1.140) | 37/276 | NT | 100% | intergenic (+11/‑1) | insD1/yqiG | IS2 transposase TnpB/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | NC_000913 | = 3485937 | 0 (0.000) | intergenic (‑121/‑181) | yhfA/crp | OsmC family protein/cAMP‑activated global transcription factor, mediator of catabolite repression | |||||
CAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3187277‑3187424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAATGCAAGCGCGAGTGAAGT < NC_000913/3485937‑3485798 caagtAACCTTGCAGGGGCGTTCGAGCATTATAACTAATGGCTTCCGCATAGTGCGCTGGGTTATCGCTCGCCAGGGGAATATCCGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAC < 2:587987/144‑1CAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAC < 1:766997/149‑1 GAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAG < 1:95863/149‑1 TTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGCAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAAT‑CACATAaccactc > 2:646963/1‑142 gGCAGAGGCGTCCGAGCATTAGAACGAATGGCATCCGCCTAGTTCGCGGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGTGTTAAGGGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCG < 2:714548/148‑1 TGCAGAGGCGTTCGAGCATTATAACGAATGGCATTCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCG < 1:643760/149‑1 GCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAGGTGATAACAGATGTCTGGAAATATAGGGGCAACTCCACATAGCTTTCGC > 1:125874/1‑149 GAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTT > 1:204649/1‑149 GGCGTGCGGGCATTATACCGAAGGGCATCCGGATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGT < 2:413973/149‑1 TTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGAGATAACAGAGAGCTGGAAATATAGCGGGCAATCCAGAATGCTTTCGCGTTGTGTCc > 2:125962/1‑148 AGCATTATAACGAATGGCATCCGCATAGTGCGGTGGGTTATCGCTTGTGGTGGGAATGTCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACCGATGTCTGGAAATATAGGGGCAAGTCCACATAGCTTTCGGGTTGTGTCTGCTG > 2:516452/1‑149 AGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTG > 1:616288/1‑149 AACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCG > 1:435130/1‑149 cggATAGTGCGCTGGGTTATCGCTCGCCACGGGAATTTCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CC < 1:145214/146‑1 CGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CC > 1:734980/1‑149 CGCAGAGTGCGCTGGGTTATCGCTCGCAACGGGAATATCCGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATAAAGGGGCAAATCCACATAGCTTTCGCTTTGTGGCTCCTGGTGTCTCGCTTCAGCATGA‑CC < 1:277805/149‑1 GCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGAGATAACAGATGTTTGTGAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGGCTCGCTTCAGCATGA‑CCC > 2:474179/1‑149 CATGGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCA < 2:486765/149‑1 CATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGGCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCA < 1:33495/149‑1 CATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTCAAGTGATAACAGAGTTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCATCATGA‑CCCA < 2:53307/149‑1 TGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTTAGCATGA‑TCCAGGGCG > 1:658386/1‑149 GCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCT > 1:589996/1‑149 CTGGGCTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTT > 2:483063/1‑149 TGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTC > 2:777926/1‑149 TTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTT > 1:142836/1‑149 TTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTT > 1:201959/1‑149 TCGCTCGCCTCGGGACTGTCTGCGGCAGCGGGGTTGTAATGGGTTAACTGTTAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCG < 2:279627/149‑1 ACGGGAATCTCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGT < 1:364884/149‑1 GGGAATATCGGCGGCGGCGGGCTTGTGATGGGTTAAGTGATAACAGATGTCGGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTA < 2:304193/149‑1 TATCTGCGGCAGCGGGCTTGTAATTGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACG < 1:308048/149‑1 TATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACG < 2:631146/149‑1 TATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACG > 2:286613/1‑149 tTCTGCGGCAGCGGGCTTGTAATGGGGTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGC < 2:236193/148‑1 ATCCGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGC < 1:162989/149‑1 TCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTATGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGGTTTGGTTGGTACGCG > 2:716446/1‑149 TCTGCGGCAGCGGGCTTGAAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCATTGAGTATACTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATCTGGTTAGTACGCG > 2:523543/1‑149 TGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGACTGGAAATATAGGGGCAAATCCAAAGAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGGGGCCGTCCGTTGCGCGCGTTGGTTAGTACGCGTA > 1:203090/1‑149 CAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTG > 1:302419/1‑149 AGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGCGTCTCGCTTCAGCAAGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGT < 1:773285/149‑1 GCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGACCCCAGACCGCCTGCTG‑TGCGCGATTTGGTTAGTACGCGTACTCTGTC < 1:188584/149‑1 GCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGTCTTCCGTTGCGCGCTTTGGTTAGTACGCGTACTCTGTC < 2:204649/149‑1 GCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTC > 2:545373/1‑149 GCGGGCTTGTAATGGGTTAAGGGATAACAGGTGTCTGGAAATATCGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTC < 2:159345/149‑1 GGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGC > 2:730922/1‑149 tgggcGGAAATATAGGCGCAAATCCACATAGCGTTCGTCTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAAT < 1:251948/144‑1 TCTGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGCAGCAAAAATGC > 2:747400/1‑149 TGGAAATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGGAAATTGACGCAGTGGAGTAGCGAAAATGCcc > 1:45617/1‑147 AATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAATGCAAGCGC < 1:545373/149‑1 AATATAGGGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGGCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAATGCAAGCGC > 2:4340/1‑149 AATATAGGGGCAAATCCACATAGCTTTCGCTTGGGGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAATGCAAGCGC < 1:78376/149‑1 GGGCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGTATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAATGCAAGCGCGAGTGAA > 2:651583/1‑149 GCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGGGTAGCAAAAATGCACGCGCGAGTGAAGc > 2:276247/1‑148 GCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAATGCAAGCGCGAGTGAAGT > 2:704342/1‑149 GCAAATCCACATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAATGCAAGCGCGAGTGAAGT < 2:729716/149‑1 CAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3187277‑3187424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGA‑CCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAATGCAAGCGCGAGTGAAGT < NC_000913/3485937‑3485798 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |