| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3944977 | NA (NA) | 11 (0.090) | 7/284 | 16.2 | 17.8% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4038810 | 53 (0.430) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA > NC_000913/4038664‑4038875 | aTGCACCGAAGCTGCGGCAGCGGCACTATGTGTTGTTGGGTCAGGGCGCGTGCTGTACGCCT‑GTGAGGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGAGAATGCTGACATCAGTAACGATAAAGCGGGTGAAAAGCGCGCTCg > 1:1500252/1‑149 (MQ=14) tGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGc > 2:826605/1‑149 (MQ=255) tGCACCGAAGCTGCGGCAGCGACACTATGTGTTGATGGTTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGc > 2:1964023/1‑149 (MQ=255) tGCACCGAAGCCGCGGCAGCGACACGATGTGTTGGTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGc < 1:1577661/149‑1 (MQ=255) gCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGcc < 1:1312313/149‑1 (MQ=255) gCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGcc < 1:203166/149‑1 (MQ=40) gCACCGAAGCTGCGGCAGCGACACTATGCGGTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTCACATTGGCAACGGTAAAGCGGGTGAAAAGCCCGCTCGcc < 2:1967168/149‑1 (MQ=11) aCCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGAGAAGGCTGACATAAGTAACGGTAAAACGGGCGAAAAGcccgcccgtggg > 2:1400944/1‑145 (MQ=14) aCCGAAGCTGCGGCAGCGACACTATGTGGTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAAGGCTGACATAAGTAAAGATAAAGCGGGTGAAAAGCCCGCTCGCCgt > 2:928661/1‑148 (MQ=255) ccaaGCGGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 1:546089/147‑1 (MQ=255) cGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 2:107634/149‑1 (MQ=255) gAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg > 1:738244/1‑149 (MQ=255) gAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAAGGGAGCGTTCTGTAAGCCT‑GGGAAGGTGTGCTGTGAGGCATGCTGGAGGAATCAGAAGTGCGAATCCTGACAGAAGTAACGATAAACCGGGGGAAAAGGCCCCACGCAGGAAg > 2:1235390/1‑149 (MQ=11) aggCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCTTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGACgcagta < 2:1773960/147‑6 (MQ=255) aaGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGCAGGTGTGCTGTGAGGCATGCTGGAGGGATCAGAAGTGCGAAGGCTGACATAAGTAACGAAAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGa > 2:127073/1‑149 (MQ=255) cGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg > 2:1664572/1‑149 (MQ=255) cGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg < 2:693467/149‑1 (MQ=40) cGGCAGCGACACTATGTGTTGTTGGGCAGGGGAGCGTTCTGTAAGCCT‑GTGACGGTGTGATGTGAGGCATGCTGGAGGTAGCAGAAGTGCGAAAGCTGACACAAGTCAAGATAAAGCGGGGAAAACGCCCGCGCGGCGGCAGACCACgg > 2:1083916/1‑149 (MQ=14) ggCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGACGCCCaaccg > 2:1913063/1‑146 (MQ=255) aGCGACACTGTGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc < 2:1281427/149‑1 (MQ=255) aGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGATGTGCGAATGCTGACATAAGTAACGATAAAGTGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc < 1:1602870/149‑1 (MQ=255) aGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc < 2:1855525/149‑1 (MQ=40) aGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc < 1:234065/149‑1 (MQ=40) gACACTCTGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTGACGATAAAGCGGGAGAAAAGCCCGCTCGCCGGAAGGCCAGGGGTTCCTg > 2:1123553/1‑149 (MQ=11) acacTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGt > 2:1994727/1‑149 (MQ=38) cacTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTc < 2:546692/149‑1 (MQ=38) acTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc > 2:1717327/1‑149 (MQ=35) tATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa > 1:710514/1‑149 (MQ=35) tATGTGTTGTTGGGTAGGGGAGCGTTCTGGAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa < 1:1658896/149‑1 (MQ=25) tATGTGTTGTTGGGTAGGGGAGCGTGCTGTAAGCCT‑GTGGAGGTGTGCTGTGAGGCATGCTGGGGGTATCGGGAGTGCGAGTGCTGACGTAGGTAACGATAAAGCGGGTGGAAAGCCCGGTCGCCGGAAGCCCAAGGGTTGCTGTCCag > 2:571794/1‑148 (MQ=11) ggtgtTGGTGGGGATGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCCGGGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTAGCCGGAAGACCATGGGTTCCTGTCCAACg < 1:1283671/148‑1 (MQ=11) tgttgtTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt > 1:1966299/1‑149 (MQ=33) gttgttGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGACCGCTCGCCGGAAGACCAAGGGTTCCCGTCCCACGTTa > 2:395430/1‑149 (MQ=12) tggggTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg < 2:1898733/147‑1 (MQ=17) gggTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg > 1:1643643/1‑149 (MQ=32) ggTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCGGCTCGCCGGAAGCCCAAGGGTTCCTGCCCAAAGTTAATCgggc > 2:505100/1‑148 (MQ=255) agggAGAGTTCTGGCATCCTGGTGAA‑GTGTGCTGCGCGGCATGCTTGAGGTATCAGAAGTGCGAATGCGGGCATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAATACCAAGGGTTCCTGTCCAACGTTAATTGGGGCAgg < 2:653996/148‑1 (MQ=11) gggAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAggg > 2:133753/1‑149 (MQ=32) ggAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt > 2:703412/1‑149 (MQ=32) aGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTTACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGa < 1:1031556/149‑1 (MQ=17) ttCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCg > 2:1364628/1‑149 (MQ=32) tGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGTGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcc > 2:267351/1‑149 (MQ=17) tGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcc > 1:1155601/1‑149 (MQ=32) tGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcc > 1:735961/1‑149 (MQ=32) gtgaGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc < 2:1190716/146‑1 (MQ=17) gTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCCGAAGCGCGAACGCTGACATAAGTAACGATAAAGCGGGGGGAGAGCCCGCTCGCGGGAAGACCCAGGCCTGATGTCCAACGTTAATCGGGGACGGATGCGTCGAccc > 2:784940/1‑149 (MQ=11) tAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcccc > 2:748290/1‑149 (MQ=32) gCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTaa > 1:1567818/1‑149 (MQ=32) gCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTaa < 1:1053368/149‑1 (MQ=32) gCCT‑GTGAAGGTGGGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTaa < 2:87218/149‑1 (MQ=17) cT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGAGGCAGGGTGAGGCGACCCCTAAgg > 1:840391/1‑149 (MQ=17) gtgAAGGTGTGCTGTGAGGAATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGCTAAAGCGGGTGAAAAGCCCGCACGCGGGAAGACCAGGGCTTCCTGTCCAACGTTAATCGGGGCAGGGCGAGTCGACCCCGAAGGca > 2:789894/1‑148 (MQ=11) tgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa > 1:600145/1‑149 (MQ=11) | ATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCT‑GTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA > NC_000913/4038664‑4038875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |