New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1097378 =	NA (NA)	8 (0.120)	7/290	8.3	16.2%	intergenic (+549/+187)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	1097524 =	42 (0.640)					intergenic (+695/+41)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCG  >  NC_000913/1097265‑1097485                                                                                                                   |                                                                                                            aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcg                                                                          <  2:50889/149‑1 (MQ=34) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCAGTCGGGGCTTCTCATCCACCCGATCT‑TGCTAGTATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcg                                                                          >  1:747006/1‑149 (MQ=11)  cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCGTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcgc                                                                         <  1:202990/149‑1 (MQ=21)     tcggTCCAACCGGCGCTCGCCAGTTCTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTTC‑AATCTACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTtcgctcg                                                                      <  1:831112/146‑1 (MQ=11)         tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCt                                                                  >  1:427084/1‑149 (MQ=35)         tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGCGAGGGGGGGATTGACTCGCTTCGCCCGCCCt                                                                  >  1:289044/1‑149 (MQ=25)             aCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCgg                                                              <  1:507563/149‑1 (MQ=34)                     tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                                      <  1:964462/149‑1 (MQ=35)                       gCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATCCGTAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCt                                                    >  1:425768/1‑149 (MQ=255)                         cAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa                                                  >  2:571648/1‑149 (MQ=35)                          aGTTGTCGAACCCCGGTCGGGGCTTCTCATCCTCGGGAGGCCTAC‑AAGATGGGAAAGAGTGGCCCGTGGTGTCGTGCGAGCGGTGCTCTAAATATTGCGCTGAGGGGGGGATTGACGCGCTTCGCTCGCCCCGCCAGCAGCCCGccgaa                                                 >  2:538263/1‑145 (MQ=2)                               tCGCACCCCGGTCGGCGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCTCTGCGGGCAGCCCGCTCACTGCGt                                            <  1:813963/149‑1 (MQ=16)                                 ggcccccGGTCGGGGCTTCTCATCCTCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCTCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTc                                          <  1:695947/146‑1 (MQ=9)                                 gAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAGAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGGCTCGCCTCGCTCGCCCCGCGGGCAGCCCGCTCCCTGCGTTc                                          >  1:581531/1‑149 (MQ=11)                                     cccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGaa                                                                                  >  1:930899/1‑104 (MQ=14)                                     cccGGTCAGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACgg                                      >  2:744757/1‑149 (MQ=17)                                       cggggggggCGGCTGATCCCCCCGGGGTGTGC‑AATATACGAAAAAAAAGCCCGGACTTTTGTACGAGCTCTTCCTTAACTATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCAGCGGCCAGCCCGCTCACTGCGTTCACGGTc                                    <  1:566423/144‑1 (MQ=11)                                          tCGGGGCTCCTCAACCCCCCGGGTGGGGC‑CATTTACGACAAAAAATCCCTTACTTTAGTACGAGGTCTTCTTTACGTCTTGCGGTGCGGGGGAGATTGACTCGCTACGCGCGCCTTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGt                                 <  2:160511/149‑1 (MQ=2)                                           cGGGGCTTCTCATCCCCCCGGTGTGTGT‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTc                                <  1:744757/149‑1 (MQ=17)                                           cGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTc                                <  2:427084/149‑1 (MQ=32)                                            ggggCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCGTCTCAAAATATGGCGGTCAGGGGGGGATCGACTCGCTCCGCTCGCCCCGCGGGCAGCCCGCGCACTGCCGTCCCGGCCGGTcc                               >  2:336105/1‑149 (MQ=11)                                              ggCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAACAATCACGTGCGTACGGGCACTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGGCTGTCCaa                             >  1:529411/1‑149 (MQ=11)                                                 ttCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCACTCGCTTCATTCGCCGTCCGGGCCGCCCGTTCGCGGCGTTCACCTTCTGTccctctg                          >  2:974893/1‑144 (MQ=11)                                                  tctcATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCGGCTCACTGCGTTCACGGTCTGTCCAACTgg                         <  1:571648/149‑1 (MQ=17)                                                     gctCCCCCCGGGGTGTGC‑AATATACTAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACGCGCGTCGCGCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTg                      <  2:502390/147‑1 (MQ=11)                                                      aTCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCCCGCCCTGCGGGCAGCCCGCCCCCTGCGTTCCCGGTCGGTCCAACTGGCTGt                     >  2:953497/1‑149 (MQ=11)                                                       tCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc                    >  2:702597/1‑149 (MQ=32)                                                       ggcccccGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc                    <  2:891078/147‑1 (MQ=11)                                                         cccccGGTGTGTGC‑AATATAAGACAAAATAGCCCGTACTTTCGTACGTGCTCTTCTTTAAATATTGCGGTGATGGGGGGATTGACTCGCTTCTCTCGCCCTGCGTGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGc                  <  2:529411/149‑1 (MQ=11)                                                          ccccGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGCCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGcc                 >  1:899551/1‑149 (MQ=11)                                                                     ttctatttaCGAAAAAAAAGCCCGTACTTTCGTACGTGCTCTTCTTTAAATGTGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa       <  2:227924/142‑1 (MQ=2)                                                                         atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCCGTCCAACTGGCTTTCGCCAGTTGTCGAAaccc   >  2:484575/1‑149 (MQ=9)                                                                          tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCg  <  1:702597/149‑1 (MQ=32)                                                                                                                   |                                                                                                            ACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGC‑AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCG  >  NC_000913/1097265‑1097485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.