| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 93.8% | 204.5 / 1.5 | 64 | intergenic (‑2/+1) | glpR/glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base G (32/26); total (36/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
TCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑C‑CA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAT‑CAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCCG > NC_000913/3560179‑3560700 | tggccggcGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGGGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGTGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑cg < 1:82216/271‑2 (MQ=255)gcggcacaGGTGAGAAGGATGGTAAAATGTTCTTTTACCATGAACTGGTTAGCAACGTTGAGATTTTTGGTGACAATGCGCAAATTGTTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGTCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑cg < 1:152069/274‑2 (MQ=255) cACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTTCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGCTCGTTCCCCGGCGTGTTAACCGAGCTGGAAGGCAGCGCCGCACCGCCATCAT‑GG‑cac > 4:299094/1‑273 (MQ=255) cACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTAGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGCGCCAGGGCGTGTTAACCGACCGGGAAGGCAGCGCGCGACCGCCCGGAT‑GG‑cgc > 4:62654/1‑273 (MQ=255) cGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATc > 1:146555/1‑278 (MQ=255) atgatgCGAAAATCTTCTTTTACCATCAACGGGTTAGCAACGTTGAGATTGTTGGTGAAAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGc < 1:42654/279‑1 (MQ=255) tgCGAAAATCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTg > 4:204718/1‑274 (MQ=255) aaaaTCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCg > 2:339637/1‑275 (MQ=255) cttcttTTACCATCAACGGTTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAg < 2:62654/274‑1 (MQ=255) ccATCAACGGGTTAGAAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAgg < 2:342384/275‑1 (MQ=255) cATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTTCCACGGCGTGTTAGCCGAACTGGAAGGCCGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGACACGGTTTTGCCCCGCCAGCCCATCGAGGt > 4:151276/1‑275 (MQ=255) agtaaCGGGTTGGGAACGTTGGGATTGTTGGTGACAAGGCGCAAAGTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCAGTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCGCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTc < 2:81831/272‑1 (MQ=255) cAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGTTCGTGCCACGGCGTGTTACCCGAACTGGACGGCCGCGCTGCCCCGCCTTGAT‑GG‑C‑CACGGATCAGGTTTTGCGCCGCCAGCCCATTGGGGTcgc > 4:180784/1‑275 (MQ=255) ttAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGaa > 2:129608/1‑274 (MQ=255) gTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTCCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGACCTGTAAGGCAGCGCCGCACCCCCATGAT‑GT‑CAGA‑GGTAGCGGTTTTGCTCCGCCCGCCCATTTAGGTCgcggcggcacggcgcgg > 4:89916/1‑264 (MQ=255) aTTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGa < 2:263498/275‑1 (MQ=255) ttgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGga > 2:537981/1‑275 (MQ=255) tgGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTAGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGCT‑GG‑CGCA‑GGATCCGGTTTTGCTCCGCCAGCTCATTGAGGTCTCGGCGAATAG‑TCTACGGGCTGACGgagcac > 1:119089/1‑275 (MQ=255) ggTGACAATGCGCAAATTGCTGTGATTGATCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGgaga < 2:304668/275‑1 (MQ=255) ggTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGgac > 2:471193/1‑273 (MQ=255) aaTGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCCCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCCCTAc > 1:15281/1‑279 (MQ=255) aaaTTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAg < 2:151276/275‑1 (MQ=255) aaaTTGCTGGGACTTGGCAGTGGGTGGGTTACCGCTTCCGGCGGGGTGCCGATATCGATAAACAGCGTCGGGCCCTTGGGGATTTGGCCCGCCACTTGGCGGGCGATGCGCGCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAg < 4:537981/275‑1 (MQ=255) agttGATGTGAGTGAGCAGGGGGGGCGCAACCGCTTACAGCGTGGGTGCGAGATCGATAAACAGCGGCGGGCCATGGGGGATTGGGTACGCCACTTTGCGGGCGATTGGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAg < 4:129608/272‑1 (MQ=255) cTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCTGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTGGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt < 2:474056/274‑1 (MQ=255) cTGGGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt < 2:270491/274‑1 (MQ=255) gATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa < 2:180784/275‑1 (MQ=255) gAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGGGCCGAAATCGCTAAACCGTGTCGAGCCATTGGGGATTTGCTCCGCCACTTGGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTGGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGa < 2:286717/275‑1 (MQ=255) ccgggcgtgcgCTACCGCTTCCGGCGGGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACAt < 2:89916/271‑1 (MQ=255) gtgcgtgcGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACg > 2:119148/1‑239 (MQ=255) gtgcgtgcGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATa > 2:127582/1‑274 (MQ=255) tgcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGAT‑GG‑CGCA‑GGGTCAGGTTTTGCTCCGCCCGCCCCTTGCGGTCGCGGCGAATAT‑TCTGCGGGCTGACGGCGAAATGCTCTACCCGCTCTTCGGTTCTGACATAACCctg > 1:60308/1‑279 (MQ=255) gcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGAACCGCCATGAT‑GGCC‑CA‑GGAACAGGTTTTGCTCGACCACCACCGTGAGGTGTGGGCGAATAGCGCTGC‑GGCGGACCGGAAACTGCCCGACCAACTCTTGGGATCTTACATAAcc > 4:286717/1‑275 (MQ=255) cggggttcccGCTTCGGGCGTGGTGCCTGTATGGGTAACACGGGTCGAGCCTTGGGGGAGTGTCTCGCCCCCTTTGCGGGCGTTGCGCGATTTTCCTTCGGACGGGGTGGCCTTGCGATAGTGGTACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCAAGCTAATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCCGCTCTTCGGTACTGACATAACCct < 4:481890/267‑1 (MQ=255) tggccTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct < 2:299094/270‑1 (MQ=255) ggcgtTACCGCTTCCGGGGTGGGGCGGATATGGATAAAAAGGGTCGAGCCATTGGGGATTTGCTCCGCCACTTGGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct < 4:339637/273‑1 (MQ=255) cgcTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATACCCctgct > 2:137718/1‑275 (MQ=255) aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCGCCGCCAGCCCATTGAGGTCGGGGCGAATAG‑TCTGCTGGCTGATGGAGTAATGCTCTACCAGCTTTTCGGTGCCGACATAACCctgctttgt > 2:502193/1‑271 (MQ=255) cTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGGTCTACCAGCTCTTCGGTACTGACATAACCct > 1:18552/1‑264 (MQ=255) cTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAc > 2:110573/1‑274 (MQ=255) ccGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGCTCGTGCCACGGCGTGTTAACCGAAATGGCAGCACNCGCCCCGCCGCCAGGAT‑GG‑CGCA‑GGAACAGGCTTTGCTCCGCCAGCTCATGGAGGTCGCGGGCATTAG‑TAGGCGNGATGACGACGAGATGCTCGACACGCGCCTCNNTGATGGAATGAGCCATCTGTTTAACCCGTTCNa > 3:65997/1‑279 (MQ=255) ggtgCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCATTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGAACAGGTTTTGCTCCGCCAGCGCATTGa > 2:80766/1‑185 (MQ=255) gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTaa > 2:428293/1‑251 (MQ=255) atagcacgtcgtggCCTTTGTGGATTTGCTCCGCCAGTGGGCGGGTGATTCTCGCTTTTTCTTCGGTTTGGGTTGCCTTGCAGTCGTGCCAAGGCGTGTGAGCCGAAATGGAAGGGTGCGCCGCACGGCAATGAT‑GG‑CGCA‑GAATCATGTTTTTCTCCGCCAGCTCATTGAGGTCGCGGAGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTAGGTAATTACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACg < 4:23284/261‑1 (MQ=255) aaaCAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGt < 2:204718/274‑1 (MQ=255) aaCAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg < 4:428293/251‑1 (MQ=255) cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGGTCTACCAACCCTTCGGTAATGAAATAACCCAGCTGTTTAACCAGTTAGATAAATCCGTTTGGACATTGtg‑ttt > 4:509352/1‑275 (MQ=255) cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct > 1:172431/1‑233 (MQ=255) cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGGTAACCGAACTGGAAGGCAGCGCCGCACCGCCAGGAT‑GG‑CACC‑AGATCAGGTTTTGCTACGCCAGCTACTTGAGTTCGGTGCGAAGAG‑TCTGCGGGCTGCCGGCGCAACGCTCTACCACCACTTCGTGACTGCCCTAAACCTCCTGTTTACCCAGTTCCATAATACCCTTGTACCATTCtg‑ttt > 4:173433/1‑275 (MQ=255) tCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCAACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCAGGAT‑GG‑CGAA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtg‑tttt > 2:492705/1‑273 (MQ=255) tGGGTATTTGCTCCGCCGCTTTGCGGGCGTTGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCTATCCTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGAT‑GG‑CGCA‑GGCTCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTtata < 1:65997/276‑1 (MQ=255) ttccTCCGCCCCTTGGCGGGCTAGGGTCGCTTTTGCTTCGGTCTGGGTGACCTTTCGATAGGTCCACGGAGTGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGAT‑GGCC‑CA‑GGTTCAGGTTTGGCTCCGCCAGCTCATTGAGGTCGCTGCGAATAG‑TCTGCGGGCTGACGGAGACATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATccc < 4:502193/272‑1 (MQ=255) gcgtggCGATGCGCTCTTTGTCTCGCGTGAGGCGGGGCGTGCGGTCGTGCCCCGGGGTGTTAACCGAACTGGAAGCCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCATCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATCCCTGGAATTAttttcg < 4:349271/271‑1 (MQ=255) gCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGCACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCAGCCGGAGAAATGCTCTACCAGCCATTCGGTACTGCCCTAACCATGCTGTTTAACCAGGTTGATAATACCGTTTCTACG‑TGTGTTTTGTTTCATTCTCACATCCCTGGAATTTttttcgtttgc > 4:334213/1‑273 (MQ=255) cgttttCTTCGGGCGGGGTGGCCTGGCGATCGGGCCACGGGGTGTTAACCGACATGGAAGGCAGCGCCGCACCGCAAGGATGGG‑G‑CA‑GGATCAGGTTTGGCTCCGCCAGCTCATTTAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTGCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAg < 4:137718/273‑1 (MQ=255) gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTTACATAACCCTGCTGTTTAACCAGTTCGATAATACAGTAGTTACGTTGTG‑TTTGTTTCATTTATAAACCCCTGGAATTATTTTCGTTTTCACGCATTGGGCGAATGcaaca > 4:427661/1‑275 (MQ=255) gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAT‑caaca > 2:259650/1‑274 (MQ=255) gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGAAGTTGTG‑TTTCTTTCATTTATAAATCCCGCGAATTATTTTCGTTTTCGCGCATTGAGCGAAT‑caaca > 2:552215/1‑274 (MQ=255) gggggCCTTGCGGTCGGGCCACGGGGTGTTAACCGAATTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCGCATTGAGGTCGCGGCGAATAG‑TGTGCGGGCTGACGGTGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAT‑CAACAAAAGcc < 4:425227/272‑1 (MQ=255) ggTGGCCTGTCGATCGTGTCACGTCTTGTCAACCGAACTGGAAGGCAGTGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGATCCGCCAGCTCATTGAGGTAGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGATCTACCAGCTCTTCGGTACTGACATAACCCGGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAT‑CAACAAAAGcc < 2:30420/275‑1 (MQ=255) cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTGTTCGGTACTGACATAACCCTGATGGTTAACCAGCTCGATAATACCGTTGTGACGTTGTG‑GTTGTTTCATGTATAAATTCCTGAAAGTAGTTTCGTTTTCGCGAATTAAGCGAAT‑CAAAAAAAGcataccat > 4:501505/1‑268 (MQ=255) cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAT‑CAACaaa > 2:425227/1‑265 (MQ=255) ttGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGAACCGCCATGAT‑GG‑CGCA‑GGATCAGGTCTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAT‑CAACAAAAGCCATCGCTa < 2:333281/275‑1 (MQ=255) gAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACGGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTAAAAATCCCTGGAATTATTTTCGTTTTCGACCATTGACCAATT‑CCAAAAAACCCACCCCTAAACCCACGCCCACACCGGCAAtctgt > 4:338360/1‑274 (MQ=255) aCTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGAA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGGGAAATGCTCTACCAGCTCTTAGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TATGTTTCTTTTATAAATACCTGGAATTATTTTCGTTTTCGCGCATTGAGCGATT‑CAACAAAAGCCATAGCAAAACCCACGGACAACCCGACGATGTGTGCTCCg > 1:151841/1‑278 (MQ=255) gAAGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTTTG‑TTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGAATTTAGCGAAT‑CAACAAAAGCCATAGCTAAACCCACGCCCAACCCGGGCATGTGGGCCCCg > 4:580304/1‑274 (MQ=255) aaGGCAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGc > 2:104400/1‑107 (MQ=255) cAGCGCCGCACCGCCATGAT‑GG‑CGCA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt < 4:104400/107‑1 (MQ=255) | TCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGAT‑GG‑C‑CA‑GGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAG‑TCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTG‑TTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAT‑CAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCCG > NC_000913/3560179‑3560700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |