New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3277814	NA (NA)	4 (0.030)	4/210	NT	NA	intergenic (+13/+42)	yhaV/agaR	toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system/transcriptional repressor of the aga regulon
	?	NC_000913	= 3277847	NA (NA)					noncoding (29/29 nt)	REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences

AGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATgcccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3277727‑3277814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGA  <  NC_000913/3277847‑3277808                                                                                                                                  AGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAA                                           <  3:1136102/87‑1 AGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAA                                           >  4:1136102/1‑87   CAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGA  >  1:961314/1‑126   CAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGA  <  2:961314/126‑1                                                    CGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGT    >  3:739314/1‑75                                                    CGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGT    <  4:739314/75‑1                                                                                                                                  AGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATgcccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3277727‑3277814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGA  <  NC_000913/3277847‑3277808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.