| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,121,586 | G→C | 9.2% | intergenic (‑32/+23) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,121,586 | 0 | G | C | 9.2% | 445.6 / 29.4 | 130 | intergenic (‑32/+23) | wcaJ/cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| Reads supporting (aligned to +/- strand): ref base G (62/56); new base C (7/5); total (69/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.05e-01 | |||||||||||
Only 100 of 130 total aligned reads displayed.
CTTCGCAAACCAGCCATAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAGGTTAAAGCGCCA > NC_000913/2121440‑2121731 | cTTCGCAAACCAGCCATAGTCCGGCAAGCATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTGATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg > 3:974512/1‑149 (MQ=255) ttCGCAAACCAGCCATAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑g > 2:716026/1‑149 (MQ=255) gCAAACCAGCCATAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGt > 4:977287/1‑149 (MQ=255) cAGCCATAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGa > 1:1387344/1‑149 (MQ=255) ccATAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGa < 1:936220/149‑1 (MQ=255) ccATAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGa > 1:348696/1‑149 (MQ=255) cATAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGAt < 2:348696/149‑1 (MQ=255) cATAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCC‑CACTGCGGGTAAggg > 4:17313/1‑144 (MQ=255) aTAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATc > 3:591701/1‑149 (MQ=255) aTAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATc > 3:1128364/1‑149 (MQ=255) gCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTaa > 2:1132684/1‑132 (MQ=255) gCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GAGTaa < 1:1132684/132‑1 (MQ=255) tgatgGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTc < 2:1387344/149‑1 (MQ=255) gatgGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTAc < 4:1224511/142‑1 (MQ=255) gatgGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTAc > 3:1224511/1‑142 (MQ=255) atCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑g > 3:674466/1‑110 (MQ=255) atCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑g < 4:674466/110‑1 (MQ=255) tCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑ggg < 2:96659/111‑1 (MQ=255) tCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑ggg > 1:96659/1‑111 (MQ=255) tGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCC‑CACTGCGGGTAAgggg > 4:392171/1‑115 (MQ=255) aaaaGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCaga < 1:1014811/149‑1 (MQ=255) aGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGcca > 3:198010/1‑134 (MQ=255) ccATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcgc < 4:1128364/149‑1 (MQ=255) aTAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑gg > 1:530306/1‑92 (MQ=255) aTAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑gg < 2:530306/92‑1 (MQ=255) aTAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGa < 3:660778/108‑1 (MQ=255) aTAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGa > 4:660778/1‑108 (MQ=255) aTAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCgcgc > 3:391265/1‑149 (MQ=255) tAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTc > 2:1204128/1‑119 (MQ=255) tAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTc < 1:1204128/119‑1 (MQ=255) tAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCt > 1:547131/1‑149 (MQ=255) tAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCt > 3:338823/1‑149 (MQ=255) gaTTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGa < 4:272691/98‑1 (MQ=255) gaTTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGa > 3:272691/1‑98 (MQ=255) aTTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGaa < 3:482968/95‑1 (MQ=255) aCGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGc < 4:591701/149‑1 (MQ=255) aTGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGt > 3:206203/1‑81 (MQ=255) aTGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGt < 4:206203/81‑1 (MQ=255) tGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTcag < 3:379905/117‑1 (MQ=255) gCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcac < 4:391265/149‑1 (MQ=255) gCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCC‑CACTGCGGGTAAggg > 2:1435831/1‑84 (MQ=38) gCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCC‑CACTGCGGGTAAggg < 1:1435831/84‑1 (MQ=38) aTTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATc < 1:3988/88‑1 (MQ=255) aTTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATc > 2:1411557/1‑88 (MQ=255) aTTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgtt < 1:1364116/127‑1 (MQ=255) ttGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACt < 3:103838/97‑1 (MQ=255) ttGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACt > 4:103838/1‑97 (MQ=255) ttGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTCGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcac < 3:930059/146‑1 (MQ=255) ttGGTATTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGCAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcac > 4:930059/1‑146 (MQ=255) cTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCa < 4:513940/149‑1 (MQ=255) ttttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑gg < 3:848852/53‑1 (MQ=255) ttttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTg‑gg > 4:848852/1‑53 (MQ=255) ttttttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAg < 4:974512/149‑1 (MQ=255) ttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCaga < 1:653843/92‑1 (MQ=255) ttAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCaga > 2:653843/1‑92 (MQ=255) aTTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGcacca < 3:752057/149‑1 (MQ=255) tCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgc < 4:1335360/89‑1 (MQ=255) aTCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTc > 1:718631/1‑149 (MQ=255) tCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCtt < 3:509076/96‑1 (MQ=255) tCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCtt > 4:509076/1‑96 (MQ=255) gttCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTAtt < 4:703585/149‑1 (MQ=255) tCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTgg > 4:1199538/1‑149 (MQ=255) ccTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGa < 2:718631/149‑1 (MQ=255) ccTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGa < 3:1199538/149‑1 (MQ=255) ccTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGa > 3:293490/1‑149 (MQ=255) ccTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGa < 4:338823/149‑1 (MQ=255) tGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGcac > 3:148429/1‑129 (MQ=255) tGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGcac < 4:148429/129‑1 (MQ=255) tGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAgg > 3:929929/1‑149 (MQ=255) ttattaGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTg > 4:298676/1‑149 (MQ=255) ttattaGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTg > 4:658698/1‑149 (MQ=255) attaGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTa < 4:1081320/138‑1 (MQ=255) attaGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTa > 3:1081320/1‑138 (MQ=255) ttaGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAg > 3:1404496/1‑118 (MQ=255) ttaGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCCCGATTCCACATTCAg < 4:1404496/118‑1 (MQ=255) atcttcccTTACCC‑CACTGCGGGTAAGGGGAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTc > 3:1352626/6‑133 (MQ=255) cttcccTTACCC‑CACTGCGGGTAAGGGGAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGtt < 2:376712/127‑1 (MQ=255) cttcccTTACCC‑CACTGCGGGTAAGGGGAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGtt > 1:376712/4‑130 (MQ=255) aGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGc > 3:442858/1‑51 (MQ=255) aGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGc < 4:442858/51‑1 (MQ=255) aGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTg > 3:619521/1‑138 (MQ=255) aGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTgc > 1:808500/1‑145 (MQ=255) ttcccTTACCC‑CACTGCGGGTAAGGGGAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAgg > 3:1278939/3‑149 (MQ=255) gCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttc < 4:916977/66‑1 (MQ=255) gCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAgg < 3:990575/149‑1 (MQ=255) tcccTTACCC‑CACTGCGGGTAAGGGGAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAGGt > 1:325597/2‑149 (MQ=255) ccccTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAGGt > 1:23112/1‑149 (MQ=255) ccccTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAGGt > 1:106976/1‑149 (MQ=255) cccTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAGGtt > 3:886001/1‑149 (MQ=255) ccTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAGGTTa > 1:1063437/1‑149 (MQ=255) cTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACAt < 2:1203946/107‑1 (MQ=255) cTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCg > 1:311053/1‑127 (MQ=255) cTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCg < 2:311053/127‑1 (MQ=255) ttACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGtt > 1:410990/1‑124 (MQ=255) ttACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGtt < 2:410990/124‑1 (MQ=255) tACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTg < 2:415387/131‑1 (MQ=255) ccGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCa < 2:305708/138‑1 (MQ=255) ccGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCa > 1:305708/1‑138 (MQ=255) ccGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAGGTTAAAgcgc > 1:195409/1‑149 (MQ=255) gCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTAAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGTGCGATTCCACCTTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGTAGGTTCAAGCGCCa > 4:902597/1‑149 (MQ=255) | CTTCGCAAACCAGCCATAGTCCGGCAAACATGATGGTGATATCTGAAAAGCGTTGCACCATAGAGATTAACGATGCATTGGTTTTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTG‑GGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCGCGCGATTCCACATTCAGGCGCACCACCGGTTCGGTATTGGAGGTGCGCAGGTTAAAGCGCCA > NC_000913/2121440‑2121731 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |