Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,764,701 G→A 13.0% intergenic (‑315/+12) sufA ← / ← rydB Fe‑S cluster assembly protein/novel sRNA, function unknown

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,764,7010GA13.0% 116.5 / 9.9 46intergenic (‑315/+12)sufA/rydBFe‑S cluster assembly protein/novel sRNA, function unknown
Reads supporting (aligned to +/- strand):  ref base G (26/14);  new base A (3/3);  total (29/17)
Fisher's exact test for biased strand distribution p-value = 6.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.26e-01

ATCTCATTGTTAGATAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAGGCGGT  >  NC_000913/1764554‑1764849
                                                                                                                                                    |                                                                                                                                                    
aTCTCATTGTTAGATAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGc                                                                                                                                                     >  3:261469/1‑149 (MQ=255)
    cATTGTTAGATAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTaa                                                                                                                                                 <  2:390746/149‑1 (MQ=255)
    cATTGTTAGATAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGCCTGTGTCG‑CACAGACTTaa                                                                                                                                                 <  1:173422/149‑1 (MQ=255)
        cttAGATAATAACCATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGt                                                                                                                                             >  1:689588/2‑149 (MQ=255)
             aTAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGt                                                                                                                                             >  4:521317/1‑144 (MQ=255)
             aTAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGGTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGt                                                                                                                                             <  3:521317/144‑1 (MQ=255)
              tAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTAc                                                                                                                                       <  4:261469/149‑1 (MQ=255)
                    ttattaTCTAAGGAGCATTAAGGCTGTTATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAGATAAGATAACCCTTAAGTCTGTG‑CGACACAGGCTTaa                                                                                                                                                 <  1:23571/133‑1 (MQ=255)
                    ttattaTCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTaa                                                                                                                                                 >  2:23571/1‑133 (MQ=255)
                          tCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGgcgc                                                                                                                           >  4:682990/1‑149 (MQ=255)
                          tCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGgcgc                                                                                                                           >  4:514799/1‑149 (MQ=255)
                          tCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGCCTGTG‑TCGCACAGACTTaa                                                                                                                                                 >  3:461700/1‑127 (MQ=39)
                          tCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGCCTGTG‑TCGCACAGACTTaa                                                                                                                                                 <  4:461700/127‑1 (MQ=39)
                               ggAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTAtc                                                                                                                      >  3:225025/1‑149 (MQ=255)
                                    aTTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTATGGGTTTCTACCCCATCCGGCGCTTATCTCCgg                                                                                                                 >  4:564692/1‑149 (MQ=255)
                                     ttAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGc                                                                                                                >  4:603593/1‑149 (MQ=255)
                                                   aaaaagaaaaagTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCtt                                                                                                  >  4:205931/1‑149 (MQ=255)
                                                               ttGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAgg                                                                                      >  3:185785/1‑149 (MQ=255)
                                                                     tGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGGCTTTG‑CGACACAGGCTTAAGGGTTTCTACCCCCACCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGAt                                                                                <  3:682990/149‑1 (MQ=255)
                                                                       aaaaTGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATaa                                                                              <  2:689588/149‑1 (MQ=255)
                                                                              cTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAACAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGGTCTTGAAGGGGCGATAAGaataat                                                                       <  3:651224/149‑1 (MQ=255)
                                                                               tATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAAtc                                                                      <  3:414966/149‑1 (MQ=255)
                                                                                 tttAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAAtctc                                                                    <  3:514799/149‑1 (MQ=255)
                                                                                      gagaTAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATaaa                                                               >  3:154278/1‑149 (MQ=255)
                                                                                              tAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAAccc                                                       >  1:306549/1‑149 (MQ=255)
                                                                                                aaaaaGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACccgc                                                     >  1:287381/1‑149 (MQ=255)
                                                                                                 aaaaGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACccgcc                                                    >  4:149974/1‑149 (MQ=255)
                                                                                                        cAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTT‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTaa                                             <  3:564692/149‑1 (MQ=255)
                                                                                                             ttCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACaa                                        >  3:610047/1‑149 (MQ=255)
                                                                                                             ttCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACaa                                        >  2:367534/1‑149 (MQ=255)
                                                                                                                aGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACt                                     >  3:172841/1‑149 (MQ=255)
                                                                                                                 gAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTg                                    >  2:25766/1‑149 (MQ=255)
                                                                                                                 gAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTCTAACACAAACTg                                    >  3:427084/1‑149 (MQ=255)
                                                                                                                  aaaTAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGc                                   <  4:154278/149‑1 (MQ=255)
                                                                                                                        gAAAACCCTTAAGTCTGTG‑TGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAg                             >  2:446908/1‑149 (MQ=255)
                                                                                                                        gAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGGTTAg                             >  1:669261/1‑149 (MQ=255)
                                                                                                                        gAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAg                             >  2:27676/1‑149 (MQ=255)
                                                                                                                           aaCCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGtat                          >  4:12117/1‑149 (MQ=255)
                                                                                                                              ccTTAAGCCTGTG‑TCGCACAGACTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGtattat                       >  1:358279/1‑149 (MQ=255)
                                                                                                                               cTTAAGCCTGTG‑TCGCACAGACTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTa                              <  4:305076/141‑1 (MQ=255)
                                                                                                                               cTTAAGCCTGTG‑TCGCACAGACTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTa                              >  3:305076/1‑141 (MQ=255)
                                                                                                                                ttAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTAttt                     >  3:101795/1‑149 (MQ=255)
                                                                                                                                  aaGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTAttttt                   <  4:610047/149‑1 (MQ=255)
                                                                                                                                     tCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGGTTAGTATTATTTTTGaa                <  2:669261/149‑1 (MQ=255)
                                                                                                                                               cacaGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAg       >  3:242051/1‑149 (MQ=255)
                                                                                                                                                 caGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAGGc     <  1:446908/149‑1 (MQ=255)
                                                                                                                                                    gCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAGGCGGt  >  2:118585/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
ATCTCATTGTTAGATAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAGTCTGTG‑CGACACAGGCTTAAGGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAGGCGGT  >  NC_000913/1764554‑1764849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑