| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,781,145 | C→G | 13.5% | intergenic (+128/‑70) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,781,145 | 0 | C | G | 13.5% | 1023.4 / 53.1 | 342 | intergenic (+128/‑70) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (224/70); new base G (3/45); total (227/115) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.69e-21 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 344 total aligned reads displayed.
CGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCT > NC_000913/3780998‑3781293 | cGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACACTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCGCG‑CCCCTCCGGGGAGAGGGCCg > 4:535682/1‑149 (MQ=255) gAAAGGGAATGCGGGATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCC‑CCCCTCCGGGGAGAGGGCCgg > 3:63874/1‑149 (MQ=255) gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCgg > 2:566856/1‑149 (MQ=255) gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCgg < 4:246829/149‑1 (MQ=255) aaaGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCggg < 2:474916/149‑1 (MQ=255) aaaGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCggg < 1:272843/149‑1 (MQ=255) aaaGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTCCTCCCTCG‑CCCCTCCGGGGAGAGGGCCggg < 3:59050/149‑1 (MQ=255) aaaGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACGCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCggg < 4:696780/149‑1 (MQ=255) gggAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTg > 3:131762/1‑149 (MQ=255) gAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTggg > 3:693469/1‑147 (MQ=255) gAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAg < 1:285012/149‑1 (MQ=255) aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAgg < 1:122775/149‑1 (MQ=255) aaTGCGGCATAGCCGTTTGCGCCCCCTCCCCCTAAACCTCCCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAgg < 1:173278/149‑1 (MQ=255) gCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑aaaa > 2:539646/1‑149 (MQ=255) gCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑aaaa < 2:231820/149‑1 (MQ=255) aTAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAgg > 4:570619/1‑141 (MQ=255) aTAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGAGAGGGG‑AAAAgg > 4:784220/1‑149 (MQ=255) aTAGTCGTTTGCCCCCCCTCACCCTACCCCTCTCCCTCAGGGAGAGGGGACCGCTC‑GGCGCTGTATGTACTCCCTCACTCTGACACGACACCGCACTCTTTTTTTCCCCATCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAgg < 2:439820/149‑1 (MQ=255) tAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGc > 2:553322/1‑149 (MQ=255) gTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGGGGGG‑AAAAGGCCg > 2:304301/1‑149 (MQ=255) gTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCg > 1:583/1‑149 (MQ=255) tCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAggg < 1:803293/138‑1 (MQ=255) tCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGc > 2:608709/1‑149 (MQ=255) tCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGc > 2:362676/1‑149 (MQ=255) tCGTTTGCGCCCCCTCACCATAACCCTCTCCCTCAGGGAGAGGGGACCGCTT‑GGCGCTGTTTGTACTCCCTCACTCTGAAACGACACCGCGCTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑ACATGGCCGc > 2:839139/1‑149 (MQ=255) gTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCAc > 3:435876/1‑149 (MQ=255) tGCGCCCCCTCACCCAACCCCCCCCCCTCGGGGGGGGGGGCCCGTCC‑GGTGCTTTATCTCCCCCCCCCCTCTAAAACGACCCCGCTCTTTTTTTTCCCCCCCCG‑CCCCCCGGGGGAGGGGGCGGGGGTGAGGGG‑AAAAGGCCGCACTGc < 4:261717/149‑1 (MQ=255) cTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAAt > 4:679143/1‑149 (MQ=255) cTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCGCCGGGGAGCGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAAt > 4:320014/1‑149 (MQ=255) tCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAAtt > 4:722819/1‑149 (MQ=255) ccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCt > 4:383235/1‑149 (MQ=255) ccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCt > 3:501673/1‑149 (MQ=255) ccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCt > 1:719137/1‑149 (MQ=255) ccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCt > 3:21934/1‑149 (MQ=255) cTACCCCTC‑CCCCCCGGGAGGGGGGGACGTTCGGGCCCTTTTTGTCCTCCCCCCCCCGGAAAAGACCCCGCCTTTTTTTTTCCCCCCTCC‑CCCCCCGGGGGGGGGGGCGGGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTg < 1:890256/149‑1 (MQ=255) cTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTg > 2:890358/1‑149 (MQ=255) tAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGc > 3:875111/1‑149 (MQ=255) aaCCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCt > 4:60586/1‑149 (MQ=255) cccTCTCCCTGAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAggg < 3:326842/115‑1 (MQ=255) ccTCTCCCTGAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc > 3:532464/1‑149 (MQ=255) ccTCTCCCTGAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc > 1:610344/1‑149 (MQ=255) ccTCTCCCTGAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc > 1:523526/1‑149 (MQ=255) ccTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTg > 1:220358/1‑110 (MQ=255) ccTCTCCCTCAGGGAGAGGAGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc > 3:729919/1‑149 (MQ=255) ctctCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc > 1:642549/1‑149 (MQ=255) ctctCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGGGAGGGG‑ATAAGGCCGCACTGCTCACCAATTTTCTGCTATcc > 4:776344/1‑149 (MQ=255) tctcCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt > 1:824222/1‑149 (MQ=255) cccccTCGGGGAAGGGGGCCCTTTC‑GGCGTTTTATTTCCCCCCCCCCTCGAAACCGCCACCGCATTTTTTTTTTCTCCCTCG‑CCCCCCGGGGGAGAGGGCGGGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg < 4:710156/147‑1 (MQ=255) ccTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTATGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc > 2:162260/1‑149 (MQ=255) cTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc > 1:185480/1‑149 (MQ=255) tCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc > 1:775776/1‑149 (MQ=255) aGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc > 3:252545/1‑149 (MQ=255) gggggCCCGTCC‑GGCGTTGTATTTCCCCCCTCCCTCGAAACCGCCCCCCCCTTTTTTTTTTCCCCCCCG‑CCCCTGGGGGGGGGGGGCGGGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg < 1:65657/148‑1 (MQ=255) gggACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAg < 2:275558/94‑1 (MQ=255) gACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg > 3:361426/1‑149 (MQ=255) gACCGTTC‑GGCGCTGTATCTACTCCCTCACTCTGAAACGAGACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg > 1:260917/1‑149 (MQ=255) ccGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAGAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa < 1:228100/149‑1 (MQ=255) cgctC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTCTCCCTCG‑CCCCCCCGGGGGGAGGGGCCGGGGGAGGGG‑AAAAGGGCGCCCTTGTTCCCAATTTTCTTCTTTTTTGCCCCCGGCCTAAggggggcgc > 3:417601/4‑145 (MQ=255) gcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa > 4:418079/1‑149 (MQ=255) ttgtttgtcCCCCCTCCCTCTGAAACGCCACCCCATTTTTTTTTTCCCCCCCC‑CCCCGCGGGGGGGGGGGCGGGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa < 1:30288/148‑1 (MQ=255) ttgtaCCCCCCCCCTCTGAAACGCCCCCCCTCTTTTTTTTCCCCCCTCG‑CCCCCCGGGGGGGAGGGCGGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc < 1:401464/148‑1 (MQ=255) aCTCCCTCACTCTGAAACGCCCCCGCTCTTTTTTTTTCCCCCTCG‑CCCCCCGGGGGGGGGGGCGGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTAc < 4:175011/149‑1 (MQ=255) aCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTAc > 1:784777/1‑149 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTTCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt > 1:365149/1‑149 (MQ=255) cccccCACTCGGAAACGACCCCGCACTTTTTTTTCCCCCCCCG‑CCCCTCGGGGGAGAGGGCCGGGGGGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt < 4:76105/148‑1 (MQ=255) ctccACTCTGAAACACCCCCAAACT‑TTTTTTTCTTCCCCGCCCCCCCCGGGGGGGGGGTCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa < 2:695543/146‑1 (MQ=255) cctccctcAAAAACGCCCCCCCTCTTTTTTTTCCCCCCCCC‑CCCCCCGGGGGGGGGGGCGGGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa < 3:409705/149‑1 (MQ=255) cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTTAGTGTGCAGTATGATAAACATCGTACTTTAc > 3:301939/1‑149 (MQ=255) tCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACg > 3:154283/1‑149 (MQ=255) cACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGTTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa > 2:196609/1‑149 (MQ=255) aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa > 3:859178/1‑149 (MQ=255) cgctGAAACGACCCCGCCCTTTTTTTTTCTCCCTCC‑CCCCCCGGGGGAGAGGGCGGGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc < 2:780665/147‑1 (MQ=255) tGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg > 4:295018/1‑149 (MQ=255) aaCGACACCGCACTCTTTTTTTCTCCATCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaaa < 3:814293/149‑1 (MQ=255) cACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCaaa > 2:648094/1‑149 (MQ=255) tttttttttCCCCCCCC‑CCCCCCGGGGGGGAGGGCGGGGGTGAGGGG‑AAAGGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATAc < 2:595482/147‑1 (MQ=255) tttttttCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTg > 3:46349/1‑149 (MQ=255) ttttttgCCCCCTCG‑CCCCGCGGGGGGGGGGCCGGGGGTGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTg < 4:154283/149‑1 (MQ=255) tttttcCTCCCCCC‑CCCCCCGGGGGGGAGGGCGGGGGGGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTgg < 4:343803/149‑1 (MQ=255) tttttcCCCCCCCC‑CCCCCCGGGGGGGGGGGCCGGGGGGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTgg < 1:435790/149‑1 (MQ=255) cccggcccTCT‑CCCCGGAGGGGCGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCaa > 4:457441/6‑149 (MQ=255) tcCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTTCGCCAAATACTGGCAAcatc > 2:393629/1‑149 (MQ=255) tcCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAcatc > 3:790719/1‑149 (MQ=255) cccTCC‑CCCCCCCGGGGAGGGGGCCGGGGTGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAcatca < 4:131762/149‑1 (MQ=255) ccTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑aaaa > 1:570137/1‑39 (MQ=255) cTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACatcatc > 1:201581/1‑149 (MQ=255) cTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACatcatc > 2:723977/1‑149 (MQ=255) cTCG‑CCCCTCCGGGGAGAGGGCCGGGGGGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACatcatc > 2:91843/1‑149 (MQ=255) tCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATcc > 2:720082/1‑149 (MQ=255) cccTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCt > 1:725783/1‑149 (MQ=255) ttcgggggggggggCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCttt < 2:765200/145‑1 (MQ=255) cTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCttt > 4:590923/1‑149 (MQ=255) tCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTg > 1:555225/1‑149 (MQ=255) ggggggggggCCGGGG‑GAGGGGCAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTgcgc < 2:256766/149‑1 (MQ=255) gagaGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCa < 4:682283/105‑1 (MQ=255) gagaGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCa > 3:682283/1‑105 (MQ=255) gagaGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTaa < 4:427947/149‑1 (MQ=255) ggggCCGGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATAc < 4:4844/148‑1 (MQ=255) ccGGGGGGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGc < 2:582601/149‑1 (MQ=255) cGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCt > 1:456206/1‑149 (MQ=255) | CGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC‑GGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCG‑CCCCTCCGGGGAGAGGGCCGGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCT > NC_000913/3780998‑3781293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |