New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1082137	46 (0.710)	3 (0.050)	3/244	NT	6.0%	pseudogene (678/726 nt)	efeU	ferrous iron permease (pseudogene)
	?	NC_000913	= 1082144	51 (0.840)					pseudogene (685/726 nt)	efeU	ferrous iron permease (pseudogene)

TTCAGGAAATCGCCTTCGATATGAGTGCGGTGCTCTCAACTCACTCGCTGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGCATTGCAGTTGAGCGTGG  >  NC_000913/1081989‑1082285                                                                                                                                                      |                                                                                                                                                     ttCAGGAAATCGCCTTCGATATGAGTGCGGTGCTCTCAACTCACTCGCTGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCA                                                                                                                                                      >  2:177643‑M1/1‑149 (MQ=255)        aaTCGCCTTCGATATGAGTGCGGTGCTCTCAACTCACTCGCTGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGctc                                                                                                                                               >  2:192625/1‑149 (MQ=255)                        aGTGCGTTGCTCTCAACTCACTCGCTGTTTTGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATGTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCGCCCACGCGCAgg                                                                                                                               <  2:440113/149‑1 (MQ=255)                        aGTGCGGTGCTCTCAACTCACTCGCTGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCTGCGCGTGGTGGCAgagcaaatgccaccagcgccgg                                                                                                                                <  1:387551‑M1/149‑23 (MQ=255)                           gCGGTGCTCTCAACTCACTCGCTGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGc                                                                                                                            <  1:177643/149‑1 (MQ=255)                                    tcAACTCACTCGCTGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCAcg                                                                                                                                     <  1:339616/131‑1 (MQ=255)                                    tcAACTCACTCGCTGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCAcg                                                                                                                                     >  2:339616/1‑131 (MQ=255)                                     cAACTCACTCGCTGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGtct                                                                                                                  <  2:191169/149‑1 (MQ=255)                                                 tGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTaa                                                                                                      <  1:584235/149‑1 (MQ=255)                                                 tGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTaa                                                                                                      <  4:159762/149‑1 (MQ=255)                                                        cACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATac                                                                                               >  3:457126/1‑149 (MQ=255)                                                              gATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCa                                                                                         >  4:318432/1‑149 (MQ=255)                                                                tGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCaaa                                                                                       <  2:74942/149‑1 (MQ=255)                                                                 ggAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAAc                                                                                      <  3:206927/149‑1 (MQ=255)                                                                 ggAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAAc                                                                                      >  4:109572/1‑149 (MQ=255)                                                                  gAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAAct                                                                                     >  2:565663/1‑149 (MQ=255)                                                                     gggATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATacga                                                                                             >  1:129848/1‑138 (MQ=255)                                                                     gggATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATacga                                                                                             <  2:129848/138‑1 (MQ=255)                                                                      ggATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTg                                                                                 >  3:106964/1‑149 (MQ=255)                                                                       gATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGc                                                                                >  3:156437/1‑149 (MQ=255)                                                                        aTTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGCTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCt                                                                               <  3:367642/149‑1 (MQ=255)                                                                          ttttGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTa                                                                             >  3:79381/1‑149 (MQ=255)                                                                                 tATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTacaa                                                                      <  4:206226/149‑1 (MQ=255)                                                                                     aGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATa                                                                  >  4:463454/1‑149 (MQ=255)                                                                                     aGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATa                                                                  >  4:461787/1‑149 (MQ=255)                                                                                      ggAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGGGGCATTTGCTCTGCCACCACAAGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATAc                                                                 >  2:466329/1‑149 (MQ=255)                                                                                        aaGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACtt                                                               <  1:110219/149‑1 (MQ=255)                                                                                          gcgcCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCATACTCTTGCTTAGTTACAACATACTTTa                                                             >  4:548958/1‑149 (MQ=255)                                                                                           cgcCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTaa                                                            <  1:447316/149‑1 (MQ=255)                                                                                            gcCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTaaa                                                           <  2:180235/149‑1 (MQ=255)                                                                                             ccGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAg                                                          <  4:378144/149‑1 (MQ=255)                                                                                              cGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAgg                                                         <  1:294391/149‑1 (MQ=255)                                                                                                    tCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCAgagcaaatgccacca                                                                                                                                       >  1:193434‑M1/1‑50 (MQ=255)                                                                                                    tCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCAgagcaaatgccacca                                                                                                                                       <  2:193434‑M1/65‑16 (MQ=255)                                                                                                      aGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGtct                                                 >  4:254010/1‑149 (MQ=255)                                                                                                          aaGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTc                                             <  3:63200/149‑1 (MQ=255)                                                                                                            gTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCAt                                           >  4:232272/1‑149 (MQ=255)                                                                                                                 cGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCa                                      <  1:367324/149‑1 (MQ=255)                                                                                                                     tGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTaa                                  <  1:348999/149‑1 (MQ=255)                                                                                                                     tGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTaa                                  >  2:405821/1‑149 (MQ=255)                                                                                                                        tttatttaTCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACtt                               >  3:382781/1‑149 (MQ=255)                                                                                                                        tttatttaTCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACtt                               >  4:108041/1‑149 (MQ=255)                                                                                                                            tttatCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTccgc                           >  3:387401/1‑149 (MQ=255)                                                                                                                                tctcATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATa                                                     <  4:195074/119‑1 (MQ=255)                                                                                                                                tctcATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATa                                                     >  3:195074/1‑119 (MQ=255)                                                                                                                                  ttaTCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAAc                     >  1:137619/3‑149 (MQ=255)                                                                                                                                  tcATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAAc                     >  1:413294/1‑149 (MQ=255)                                                                                                                                    aTCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGc                   >  2:310554/1‑149 (MQ=255)                                                                                                                                       ccGGCGC‑TGGTGGCATTTGCTCtgccaccacgcgcagggatgagataaataaaccagacggcgacttcgctgacgctcggcgcttcctgatagccaaaaatcccttccatcagcgtgccaaacagcgagtgagttgagagcaccgcact                <  1:387551‑M2/149‑128 (MQ=255)                                                                                                                                       ccGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGCAtt                >  3:430531/1‑149 (MQ=255)                                                                                                                                        cGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGCATTg               >  1:157451/1‑149 (MQ=255)                                                                                                                                               tggtggCATTTGCTCtgccaccagcgccgggatgagataaataaaccagacggcgacttcgctga                                                                                             <  2:193434‑M2/65‑51 (MQ=255)                                                                                                                                               tggtggCATTTGCTCtgccaccagcgccgggatgagataaataaaccagacggcgacttcgctga                                                                                             >  1:193434‑M2/1‑15 (MQ=255)                                                                                                                                                    gCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGCATTGCAGTTGAGCGt    >  2:435387/1‑149 (MQ=255)                                                                                                                                                    gCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGCATTGCAGTTGAGCGt    <  4:387401/149‑1 (MQ=255)                                                                                                                                                     cATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGCATTGCAGTTGAGCGTg   <  1:192625/149‑1 (MQ=255)                                                                                                                                                      aTTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGCATTGCAGTTGAGCGTgg  >  4:420127/1‑149 (MQ=255)                                                                                                                                                      aTTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGCATTGCAGTTGAGCGTgg  >  2:229959/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TTCAGGAAATCGCCTTCGATATGAGTGCGGTGCTCTCAACTCACTCGCTGTTTGGCACGCTGATGGAAGGGATTTTTGGCTATCAGGAAGCGCCGAGCGTCAGCGAAGTCGCCGTCTGGTTTATTTATCTCATCCCGGCGC‑TGGTGGCATTTGCTCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATACTTTAAAGGGATAGTCTCGTCATGACCATTAACTTCCGCCGTAACGCATTGCAGTTGAGCGTGG  >  NC_000913/1081989‑1082285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.