BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4056439	132 (1.260)	7 (0.070)	5/246	NT	5.2%	intergenic (‑100/+186)	glnL/glnA	sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase
*	?	NC_000913	= 4056445	131 (1.320)	7 (0.070)	5/246	NT	5.2%	intergenic (‑106/+180)	glnL/glnA	sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase

Only 100 of 172 total aligned reads displayed.

TCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGC  >  NC_000913/4056291‑4056586

tCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCAT                                                                                                                                                      >  4:765267‑M1/1‑149 (MQ=255)

    cGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑Ca                                                                                                                                                  >  2:179620/1‑148 (MQ=255)

     gAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAACCCATG‑Cag                                                                                                                                                 <  2:96111/148‑1 (MQ=255)

       gTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGa                                                                                                                                              <  4:824825‑M2/149‑2 (MQ=255)

           aGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGatgg                                                                                                                                           >  2:418456‑M2/1‑144 (MQ=255)

              aTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTa                                                                                                                                       >  3:460119/1‑149 (MQ=255)

                  gCCCAGCATCGGGCNGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGa                                                                                                                                   <  4:552778/149‑1 (MQ=255)

                    ccAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATa                                                                                                                                 >  4:44835/1‑149 (MQ=255)

                     cAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATa                                                                                                                                 <  2:367337/148‑1 (MQ=255)

                     cAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAg                                                                                                                                >  4:648987/1‑149 (MQ=255)

                       gCATCGGGCTGCGTGCCTGTTGCCATGAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGc                                                                                                                               <  1:816007/148‑1 (MQ=255)

                         aTCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCACCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGCTAGCTGa                                                                                                                            <  4:622589/149‑1 (MQ=255)

                          tCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGat                                                                                                                                             <  3:648342‑M2/131‑3 (MQ=255)

                          tCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGAc                                                                                                                           <  3:274531/149‑1 (MQ=255)

                          tCGGGCTGCGTGCCTGTTACCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGat                                                                                                                                             >  4:648342‑M2/1‑129 (MQ=255)

                              gCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACaaa                                                                                                                        >  1:937248/1‑148 (MQ=255)

                                   gTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCAc                                                                                                                  <  4:55606/149‑1 (MQ=255)

                                      ccTGTCGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGTTAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGt                                                                                                                >  2:472049/1‑148 (MQ=255)

                                        tGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTgg                                                                                                             <  4:288360/149‑1 (MQ=255)

                                         gTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTgg                                                                                                             <  1:338326/148‑1 (MQ=255)

                                         gTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTgg                                                                                                             >  1:502195/1‑148 (MQ=255)

                                          ttGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACaaa                                                                                                                        <  2:887060/136‑1 (MQ=255)

                                               aTAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGTGAGCGa                                                                                                      >  4:292637/1‑149 (MQ=255)

                                               aTAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCg                                                                                                       >  2:193034/1‑148 (MQ=255)

                                               aTAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGa                                                                                                      <  4:82175/149‑1 (MQ=255)

                                               aTAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATCTCTGCtgggcttttttctccgtcaattct                                                                                                                        <  3:410628‑M2/133‑25 (MQ=255)

                                               aTAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATC‑TCTGCatgggcttttttctccgtcaattct                                                                                                                      >  4:410628‑M2/1‑108 (MQ=255)

                                               aTAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATC‑TCTGCatgggcttttttctccgtcaat                                                                                                                         <  4:563211‑M2/130‑23 (MQ=255)

                                               aTAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATC‑TCTGCatgggcttttttctccgtcaat                                                                                                                         >  3:563211‑M2/1‑108 (MQ=255)

                                                tAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGa                                                                                                      >  1:288391/1‑148 (MQ=255)

                                                 aaaGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCGTACAAACTTCACGTTGGAGAGCGAc                                                                                                     <  2:932179/148‑1 (MQ=255)

                                                  aaGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTc                                                                                                   >  3:422795/1‑149 (MQ=255)

                                                    gCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCa                                                                                                  >  2:550025/1‑148 (MQ=255)

                                                           ccTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTc                                                                                           >  2:394967/1‑148 (MQ=255)

                                                            cTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCCGAGAATTGACGGAGAAAAAAGCCCATG‑CAAAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTcc                                                                                          >  1:716758/1‑148 (MQ=255)

                                                                  aGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTa                                                                                    <  2:21667/148‑1 (MQ=255)

                                                                  aGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAc                                                                                   <  3:648987/149‑1 (MQ=255)

                                                                    gTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAcc                                                                                  <  1:545078/148‑1 (MQ=255)

                                                                     ttGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACca                                                                                 >  2:542850/1‑148 (MQ=255)

                                                                      tGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcac                                                                                >  2:608140/1‑148 (MQ=255)

                                                                          ccATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatca                                                                            >  1:137749/1‑148 (MQ=255)

                                                                          ccATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatca                                                                            >  1:899457/1‑148 (MQ=255)

                                                                          ccATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatca                                                                            <  1:97847/148‑1 (MQ=255)

                                                                           cATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACatcatc                                                                          >  3:257840/1‑149 (MQ=255)

                                                                                   tGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGAt                                                                                                                                  <  3:737127/85‑1 (MQ=255)

                                                                                    gCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg                                                                 <  3:848382/149‑1 (MQ=255)

                                                                                          taGGTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGa                                                           <  3:824825/149‑1 (MQ=255)

                                                                                          taGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCgg                                                            >  1:532130/1‑148 (MQ=255)

                                                                                          taGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCgg                                                            <  2:532130/148‑1 (MQ=255)

                                                                                             cTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATaa                                                        >  3:158793/1‑149 (MQ=255)

                                                                                               ttttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAg                                                       <  2:699701/148‑1 (MQ=255)

                                                                                                tttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGa                                                      <  2:860670/148‑1 (MQ=255)

                                                                                                     ggATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAtt                                                >  4:927956/1‑149 (MQ=255)

                                                                                                     ggATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAtt                                                >  3:227037/1‑149 (MQ=255)

                                                                                                      gATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAttt                                               <  4:181346/149‑1 (MQ=255)

                                                                                                      gATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAtt                                                <  1:847950/148‑1 (MQ=255)

                                                                                                         aaaaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCg                                            >  4:255192/1‑149 (MQ=255)

                                                                                                          aaaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGt                                           <  3:485382/149‑1 (MQ=255)

                                                                                                           aaaTCGCGAAGCATCAGAGAATTGCCGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCCGCCTACCACATCATCACCTTGTAGGCCGGATAAAACGCATTTGCGTc                                          >  4:714656/1‑149 (MQ=255)

                                                                                                           aaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGt                                           <  2:937248/148‑1 (MQ=255)

                                                                                                            aaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTc                                          >  2:713348/1‑148 (MQ=255)

                                                                                                             aGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTc                                                                                           >  2:381535/1‑98 (MQ=255)

                                                                                                             aGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTc                                                                                           <  1:381535/98‑1 (MQ=255)

                                                                                                              gcgcGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATGCGACGCAAATGCGTctta                                       <  3:292637/149‑4 (MQ=255)

                                                                                                               cgcgAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCa                                       >  1:142090/1‑148 (MQ=255)

                                                                                                                  gAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATcc                                    <  1:250850/148‑1 (MQ=255)

                                                                                                                  gAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATcc                                    <  1:179620/148‑1 (MQ=255)

                                                                                                                  gAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCg                                   <  4:216263/149‑1 (MQ=255)

                                                                                                                        tCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa                             >  4:843561/1‑149 (MQ=255)

                                                                                                                         cAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa                             >  1:60510/1‑148 (MQ=255)

                                                                                                                         cAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAt                            <  4:41990/149‑1 (MQ=255)

                                                                                                                           gagaATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTg                                                                                                              >  1:445591/1‑65 (MQ=255)

                                                                                                                           gagaATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtg                           >  1:596330/1‑148 (MQ=255)

                                                                                                                            agaATTGACGGAGAAAAAAGCCCATgcagagatgggcttttttctccgtcaattctctgatgcttcgcgctttttatccgtaaaaagctataatgcactaaaatggtgcaacctgttcaggagactgctttat                                          <  3:410628‑M1/133‑109 (MQ=255)

                                                                                                                               aTTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCtt                      <  3:44835/149‑1 (MQ=255)

                                                                                                                               aTTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCtt                      <  4:11358/149‑1 (MQ=255)

                                                                                                                               aTTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCt                       <  1:124305/148‑1 (MQ=255)

                                                                                                                                 tGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg                     >  1:36392/1‑148 (MQ=255)

                                                                                                                                    cGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCa                  <  1:180403/148‑1 (MQ=255)

                                                                                                                                       agaAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg               >  2:572322/1‑148 (MQ=255)

                                                                                                                                        gaAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa              >  1:550478/1‑148 (MQ=255)

                                                                                                                                         aaaaaaGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt             >  2:803688/1‑148 (MQ=255)

                                                                                                                                          aaaaaGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATcc           <  3:773536/149‑1 (MQ=255)

                                                                                                                                           aaaaGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc          >  4:399607/1‑149 (MQ=255)

                                                                                                                                           aaaaGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc          >  3:314158/1‑149 (MQ=255)

                                                                                                                                            aaaGCCCATG‑CAGAGatgggcttttttctccgtcaattctctgatgcttcgcgctttttatccgtaaaaagctataatgcactaaaatggtgcaacctgttcaggagactgctttatggcaacaggcacgcagcccgatgctgggcaga         <  3:237661‑M2/149‑135 (MQ=255)

                                                                                                                                            aaaGCCCATG‑CAGAGatgggcttttttctccgtcaattctctgatgcttcgcgctttttatccgtaaaaagctataatgcactaaaatggtgcaacctgttcaggagactgctttatggcaacaggcacgcagcccgatgctgggcag          <  1:817157‑M2/148‑134 (MQ=255)

                                                                                                                                            aaaGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCGCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtg                           >  1:492000/1‑131 (MQ=255)

                                                                                                                                            aaaGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa         <  3:255192/149‑1 (MQ=255)

                                                                                                                                            aaaGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCAACACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc          <  2:460798/148‑1 (MQ=255)

                                                                                                                                             aaGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa         <  1:444066/148‑1 (MQ=255)

                                                                                                                                             aaGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAg        >  4:898580/1‑149 (MQ=255)

                                                                                                                                              aGCCCATG‑CAGAGatgggcttttttctccgtcaattctctgatgcttcgcgctttttatccgtaaaaagctataatgcactaaaatggtgcaacctgttcaggagactgctttatggcaacaggcacgcagcccgatgctgggcagat        <  2:861671‑M2/148‑136 (MQ=255)

                                                                                                                                               gCCCATctctgcatgggcttttttctccgtcaattctctgatgcttcgcgctttttatccgtaaaaagctataatgcactaaaatggtgcaacctgttcaggagactgctttatggcaacaggcacgcagcccgatgctgggcagatc        <  2:280282‑M1/148‑143 (MQ=255)

                                                                                                                                                 ccATctctgcatgggcttttttctccgtcaattctctgatgcttcgcgctttttatccgtaaaaagctataatgcactaaaatggtgcaacctgttcaggagactgctttatggcaacaggcacgcagcccgatgctgggcagatcctc     <  4:769201‑M1/149‑146 (MQ=255)

                                                                                                                                                 ccATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCaaat                                               <  4:274010/106‑4 (MQ=255)

                                                                                                                                                 ccATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCt    <  3:399607/149‑1 (MQ=255)

                                                                                                                                                  cATctctgcatgggcttttttctccgtcaattctctgatgcttcgcgctttttatccgtaaaaagctataatgcactaaaatggtgcaacctgttcaggagactgctttatggcaacaggcacgcagcccgatgctgggcagatcctc     >  2:115858‑M1/1‑3 (MQ=255)

                                                                                                                                                   aTctctgcatgggctttttcctccgtcaattctctgatgcttcgcgctttttatccgtaaaaagctataatgcactaaaatggtgcaacctgttcaggagactgctttatggcaacaggcacgcagcccgatgctgggcagatcctcaa   >  4:793679‑M1/1‑2 (MQ=255)

                                                                                                                                                    tctctgcatgggcttttttctccgtcaattctctgatgcttcgcgctttttatccgtaaaaagctataatgcactaaaatggtgcaacctgttcaggagactgctttatggcaacaggcacgcagcccgatgctgggcagatcctcaac  >  4:514273‑M1/1‑1 (MQ=255)

TCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATG‑CAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGC  >  NC_000913/4056291‑4056586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.