Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,753,986 A→T 9.7% intergenic (+40/+22) bamE → / ← ratB lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,753,9860AT 9.7% 466.2 / 33.1 144intergenic (+40/+22)bamE/ratBlipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein
Reads supporting (aligned to +/- strand):  ref base A (71/59);  new base T (7/7);  total (78/66)
Fisher's exact test for biased strand distribution p-value = 7.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.50e-01

Only 100 of 145 total aligned reads displayed.

CCAGCAACCAGGTCATGAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCGCTTAGTTTTGCCGGACGGCTGT  >  NC_000913/2753838‑2754132
                                                                                                                                                    |                                                                                                                                                   
   gCAACCAGGTCATGAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGa                                                                                                                                                  <  3:742701/149‑1 (MQ=255)
   gCAACCAGGTCATGAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGa                                                                                                                                                  <  2:131475/149‑1 (MQ=255)
     aaCCAGGTCATGAAGGTGTAACTCAGCAAACGCTGACGCTGGCCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGAGCTCAATGAGc                                                                                                                                                >  3:685697/1‑149 (MQ=255)
      aCCAGGTCATGAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCa                                                                                                                                               >  2:988870/1‑149 (MQ=255)
       ccAGGTCATGAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCAc                                                                                                                                              >  1:76482/1‑149 (MQ=255)
           gTCATGAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCATTGAGCACCttt                                                                                                                                          <  3:59264/149‑1 (MQ=255)
           gTCATGAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCttt                                                                                                                                          <  1:103207/149‑1 (MQ=255)
            tCATGAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCATTGAGCACCtttt                                                                                                                                         <  2:600659/149‑1 (MQ=255)
                gAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTt‑ct                                                                                                                                    >  2:177186/1‑149 (MQ=255)
                gAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGATGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTt‑ct                                                                                                                                    >  4:953507/1‑149 (MQ=255)
                   ggTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTt‑ctgtc                                                                                                                                 <  2:100401/149‑1 (MQ=255)
                     tgtAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTt‑ctgtctg                                                                                                                               >  2:941283/1‑149 (MQ=255)
                      gtAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑cagtctgt                                                                                                                              >  2:443771/1‑149 (MQ=255)
                          cTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGttatt                                                                                                                          <  2:600583/149‑1 (MQ=255)
                           tCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGttattt                                                                                                                         >  4:859572/1‑149 (MQ=255)
                           tCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGttattt                                                                                                                         >  4:550552/1‑149 (MQ=255)
                             aGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGttatttat                                                                                                                       >  4:441636/1‑149 (MQ=255)
                             aGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGttatttat                                                                                                                       <  1:1046655/149‑1 (MQ=255)
                               cAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGtta                                                                                                                            >  3:638236/1‑142 (MQ=255)
                               cAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGtta                                                                                                                            <  4:638236/142‑1 (MQ=255)
                               cAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTc                                                                                                                     <  3:859572/149‑1 (MQ=255)
                               cAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTc                                                                                                                     <  3:889143/149‑1 (MQ=255)
                                aaaCGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCg                                                                                                                    >  2:381995/1‑149 (MQ=255)
                                    gctgacgctgacCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGa                                                                                                                <  2:453596/149‑1 (MQ=255)
                                          gctgacCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTc                                                                                                          <  2:103366/149‑1 (MQ=255)
                                          gctgacCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTc                                                                                                          >  3:317159/1‑149 (MQ=255)
                                               ccTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTc                                                                                                     <  1:1046983/149‑1 (MQ=255)
                                                 tttAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCATTGAGCACCttttt                                                                                                                                        >  1:966401/1‑113 (MQ=255)
                                                 tttAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCATTGAGCACCttt                                                                                                                                          <  2:837841/111‑1 (MQ=255)
                                                 tttAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCATTGAGCACCttt                                                                                                                                          >  1:837841/1‑111 (MQ=255)
                                                 tttAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCACTCAAAGACGTTAAAAAAGGTGCTCATTGAGCACCttttt                                                                                                                                        <  2:966401/113‑1 (MQ=255)
                                                       aGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTg                                                                                             >  3:591433/1‑149 (MQ=255)
                                                           gCGGTGTGTTGGCCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTTCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGaa                                                                                         <  3:9617/149‑1 (MQ=255)
                                                              gtgtgtTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGct                                                                                      >  3:935103/1‑149 (MQ=255)
                                                                   ttGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTc                                                                                 <  4:310314/149‑1 (MQ=255)
                                                                   ttGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTc                                                                                 <  1:3529/149‑1 (MQ=255)
                                                                        cAATATTGATAACAAGCCTGCGCTGAGTGGTAACTCAAAATAAAGTTGCTCTCAAATACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATc                                                                            <  4:685697/149‑1 (MQ=255)
                                                                        cAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCACAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATc                                                                            >  1:686453/1‑149 (MQ=255)
                                                                        cAATATTGATAACAAACCTGCGATGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTTTTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATc                                                                            >  2:426483/1‑149 (MQ=255)
                                                                         aaTATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTAGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCg                                                                           <  3:233806/149‑1 (MQ=255)
                                                                            atTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGc                                                                                       >  2:920657/1‑134 (MQ=255)
                                                                               gATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAAt                                                                      >  2:717427/1‑148 (MQ=255)
                                                                               gATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAAt                                                                      <  2:64591/148‑1 (MQ=255)
                                                                               gATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAAt                                                                      <  1:717427/148‑1 (MQ=255)
                                                                               gATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAAt                                                                      >  1:64591/1‑148 (MQ=255)
                                                                                 tAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATc                                                                            <  3:470825/140‑1 (MQ=255)
                                                                                 tAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATgag                                                                   >  2:303487/1‑149 (MQ=255)
                                                                                  aaCAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATgaga                                                                  >  3:580487/1‑149 (MQ=255)
                                                                                  aaCAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATgaga                                                                  <  1:381995/149‑1 (MQ=255)
                                                                                  aaCAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATgaga                                                                  >  1:838424/1‑149 (MQ=255)
                                                                                  aaCAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATgaga                                                                  >  1:608457/1‑149 (MQ=255)
                                                                                  aaCAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATgaga                                                                  >  2:1061995/1‑149 (MQ=255)
                                                                                   aCAAACCTGCGCTGCGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGagag                                                                 >  4:172348/1‑149 (MQ=255)
                                                                                   aCAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGagag                                                                 >  4:445180/1‑149 (MQ=255)
                                                                                   aCAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGagag                                                                 >  1:498328/1‑149 (MQ=255)
                                                                                     aaaCCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAggg                                                               >  2:857086/1‑149 (MQ=255)
                                                                                     aaaCCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAgg                                                                >  4:532042/1‑148 (MQ=255)
                                                                                      aaCCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGc                                                              <  3:550552/149‑1 (MQ=255)
                                                                                       aCCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATc                                                                            <  1:46653/134‑1 (MQ=255)
                                                                                       aCCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGCCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATc                                                                            >  2:46653/1‑134 (MQ=255)
                                                                                        ccTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGa                                                            <  3:441636/149‑1 (MQ=255)
                                                                                         cTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGAt                                                           >  1:407285/1‑149 (MQ=255)
                                                                                           gcgcTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATaa                                                         <  4:524779/149‑1 (MQ=255)
                                                                                             gcTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAAt                                                       <  1:454386/149‑1 (MQ=255)
                                                                                              cTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAAtc                                                      <  1:1057736/149‑1 (MQ=255)
                                                                                               tGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAAtct                                                     >  4:462594/1‑149 (MQ=255)
                                                                                                gAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAAtctc                                                    <  1:303487/149‑1 (MQ=255)
                                                                                                     gTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAGAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCAccc                                               >  1:516014/1‑149 (MQ=255)
                                                                                                     gTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCAccc                                               >  2:509953/1‑149 (MQ=255)
                                                                                                      tAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTc                                                                                 <  2:669501/114‑1 (MQ=255)
                                                                                                      tAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTc                                                                                 >  1:669501/1‑114 (MQ=255)
                                                                                                          taataataaAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCg                                          >  3:444156/1‑149 (MQ=255)
                                                                                                          taataataaAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCg                                          >  4:501778/1‑149 (MQ=255)
                                                                                                          taataataaAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCg                                          >  1:887332/1‑149 (MQ=255)
                                                                                                             taataaAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGt                                                                                                   >  3:983698/1‑89 (MQ=255)
                                                                                                             taataaAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGt                                                                                                   <  4:983698/89‑1 (MQ=255)
                                                                                                                taaAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCcatca                                    >  3:1016868/1‑149 (MQ=255)
                                                                                                                 aaaGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCcatcat                                   <  2:686453/149‑1 (MQ=255)
                                                                                                                    gTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGAt                                                                             <  1:528367/104‑1 (MQ=255)
                                                                                                                    gTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGAt                                                                             >  2:528367/1‑104 (MQ=255)
                                                                                                                         tctcAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCtt                                                                                   >  3:698799/1‑93 (MQ=255)
                                                                                                                         tctcAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGagag                                                                 <  4:164625/111‑1 (MQ=255)
                                                                                                                         tctcAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTa                           >  3:781985/1‑149 (MQ=255)
                                                                                                                         tctcAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTa                           >  4:664483/1‑149 (MQ=255)
                                                                                                                         tctcAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTCTCTGCTCGTCGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTa                           >  4:73299/1‑149 (MQ=255)
                                                                                                                           tcAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGc                                 <  2:643934/141‑1 (MQ=255)
                                                                                                                           tcAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATc                         >  2:96582/1‑149 (MQ=255)
                                                                                                                              aagaagTTAAAAAAGGGGCCCCATTAGCACCATTTTT‑CTGTCTGTTATTTATTTGCTGAGCTTTCTTCTCGTTGCCTGCGAAGCTCTTTAGGCTCGGCTACGAGAGGGCGATAAATCTCCAACCGATCGCCATCATGCACACTATCGCt                      >  2:353158/1‑149 (MQ=255)
                                                                                                                              aaGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTc                                                                                 <  3:999503/90‑1 (MQ=255)
                                                                                                                                   gTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCGCTTAGtt                 >  2:302490/1‑149 (MQ=255)
                                                                                                                                   gTTAAAAAAGGGGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTAATCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGTATCTGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCCCTTAGtt                 >  3:524167/1‑149 (MQ=255)
                                                                                                                                     tAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCGCTTAGtttt               <  1:988870/149‑1 (MQ=255)
                                                                                                                                     gaaaaaaGGTGCTCATTGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCGCTTAGtttt               >  3:337167/2‑149 (MQ=255)
                                                                                                                                       aaaaaGGTGCTCATTGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCa                                                  <  2:469359/112‑1 (MQ=255)
                                                                                                                                       aaaaaGGTGCTCATTGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCa                                                  >  1:469359/1‑112 (MQ=255)
                                                                                                                                       aaaaaGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTTTTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCAGATCGCCATCATGCACACTATCGCTTAGTTTTGc             >  1:874673/1‑149 (MQ=255)
                                                                                                                                       aaaaaGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCGCTTAGTTTTGc             <  3:73299/149‑1 (MQ=255)
                                                                                                                                        aaaaGGTGCTCATTGAGCACCTTTTTTAACGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCGCTTAGTTTTGc             >  2:169438/1‑149 (MQ=255)
                                                                                                                                                cTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCGCTTAGTTTTGCCGGACGGCt    <  1:941283/149‑1 (MQ=255)
                                                                                                                                                  cAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCGCTTAGTTTTGCCGGACGGCTGt  >  1:121096/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CCAGCAACCAGGTCATGAAGGTGTAACTCAGCAAACGCTGACGCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTT‑CTGTCTGTTATTTATTCGCTGATTTTTCTGCTCGTTGCCTGCGAAGCTCTTTCGGATCGGCAATGAGAGGGCGATAAATCTCCACCCGATCGCCATCATGCACACTATCGCTTAGTTTTGCCGGACGGCTGT  >  NC_000913/2753838‑2754132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑