New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1437201 =	155 (0.940)	8 (0.050)	8/248	NT	5.3%	noncoding (81/109 nt)	micC	sRNA antisense regulator of OmpC translation, Hfq‑dependent
	?	NC_000913	1437225 =	141 (0.900)					noncoding (105/109 nt)	micC	sRNA antisense regulator of OmpC translation, Hfq‑dependent

GAACAGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1437355‑1437201 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcttTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGC  >  NC_000913/1437225‑1437371                                                                                                                                                                                                                                                                                                                 GAACAGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTC                                                                                                                                                           <  3:719303/149‑1  AACAGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCG                                                                                                                                                          <  2:296385/149‑1   ACAGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGG                                                                                                                                                         <  1:57918/149‑1   ACAGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGG                                                                                                                                                         <  2:1465687/149‑1    CAGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGG                                                                                                                                                        <  2:958702/149‑1    CAGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGG                                                                                                                                                        <  2:1204977/149‑1     acagtTGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGGCTGCCGGGCTCAAAGGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAATTTCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGGC                                                                                                                                                       <  2:888378/144‑1     AGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGGC                                                                                                                                                       <  3:478338/149‑1     AGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGGC                                                                                                                                                       <  2:873634/149‑1       TTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGGCTT                                                                                                                                                     <  3:663091/149‑1       TTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGGCTT                                                                                                                                                     <  1:1403937/149‑1       TTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGGCTT                                                                                                                                                     <  3:519702/149‑1       TTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTAGTACTTCCTGGCACAAATGGTCGGAAAAGCTGAAAAAAGCGACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGGCTT                                                                                                                                                     <  1:155862/149‑1                       CAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGAACAGTC‑GTCCGGGCTTTTTTTTTAGAATTGGA                                                                                                                                     <  2:1199495/149‑1                                  CAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGAACAGTC‑GTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATC                                                                                                                          <  2:197118/149‑1                                                      GGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGAACAGTC‑GTCCGGGCTTTTTTTTTAGAATT                                                                                                                                        <  4:26775/115‑1                                                      GGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGAACAGTC‑GTCCGGGCTTTTTTTTTAGAATT                                                                                                                                        >  3:26775/1‑115                                                                                        ACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGAACAGTC‑GTCCGGGCTTTTTTTTTA                                                                                                                                             <  3:100306/76‑1                                                                                        ACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGAAC‑AGTCGTCCGGGCTTTTTTTTTA                                                                                                                                             >  4:100306/1‑76                                                                                                                                  AAAAGCCCGGACGACT‑GTTCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCAT                          >  2:147559/1‑149                                                                                                                                              GACT‑GTTCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCC              >  3:913691/1‑149                                                                                                                                                      CGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTG       >  3:497743/1‑149                                                                                                                                                       GGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGG      >  4:798848/1‑149                                                                                                                                                         GCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCT    >  2:260884/1‑149                                                                                                                                                         GCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCT    >  4:254796/1‑149                                                                                                                                                           TTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTATTCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGC  >  4:858779/1‑149                                                                                                                                                           TTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGC  >  3:177387/1‑149                                                                                                                                                           TTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGC  >  2:795710/1‑149                                                                                                                                                           TTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGC  >  4:586835/1‑149                                                                                                                                                                                                                                                                                                                 GAACAGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAAAGCGGAAAAAAGCAACACCGATTAAATGCTCTGGATAAGGATTATCCAATTCTAAAAAAAAAGCCCGGACGACT‑GTTCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1437355‑1437201 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcttTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTCCATAACTGTTCTGCCACTTCTGGCTGC  >  NC_000913/1437225‑1437371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.