New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3311373 =82 (1.060)8 (0.110) 6/248 NT 9.6% noncoding (149/174 nt) psrO novel sRNA, function unknown
?NC_000913 3311399 = 74 (1.020)intergenic (+1/+16) psrO/rpsO novel sRNA, function unknown/30S ribosomal subunit protein S15

Only 100 of 102 total aligned reads displayed.

GACAACCCTAACCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCTGTGGTGATCTTTTTT  >  NC_000913/3311251‑3311546
                                                                                                                                                      |                                                                                                                                                   
gACAACCCTAACCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTc                                                                                                                                                     <  3:673695/149‑1 (MQ=255)
 ctgctgcgcatggtttctcagcgtcgtaaactgctcgactacctgaaacgtaaagacgtagcacgttacacccagctcatcgagcgcctgggtctgcgtcgctaattcttgcgagtttcagAAAAAGGGGCCACTCAG‑GCCCCCTTTTc                                                                                                                                                     >  1:216379‑M1/122‑149 (MQ=255)
 ctgctgcgcatggtttctcagcgtcgtaaactgctcgactacctgaaacgtaaagacgtagcacgttacacccagctcatcgagcgcctgggtctgcgtcgctaattcttgcgagtttcagAAAAAGGGGCCACTCAG‑GCCCCCTTTTc                                                                                                                                                     >  1:375327‑M1/122‑149 (MQ=255)
 aCAACCCTAACCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCt                                                                                                                                                    <  1:434896/149‑1 (MQ=255)
   aaCCCTAACCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAGTACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGa                                                                                                                                                  >  4:541171/1‑149 (MQ=255)
     cccTAACCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAATCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGaaa                                                                                                                                                <  1:72318/149‑1 (MQ=255)
      ccTAACCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAAc                                                                                                                                               >  1:583466/1‑149 (MQ=255)
      ccTAACCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAAc                                                                                                                                               >  4:336461/1‑149 (MQ=255)
            ccAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCaa                                                                                                                                         <  4:331309/149‑1 (MQ=255)
            ccAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCaa                                                                                                                                         >  2:14186/1‑149 (MQ=255)
            ccAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACAATAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCaa                                                                                                                                         <  4:260261/149‑1 (MQ=255)
              aGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGa                                                                                                                                       >  3:462720/1‑149 (MQ=255)
               gCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGaa                                                                                                                                      <  2:272794/149‑1 (MQ=255)
               gCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGaa                                                                                                                                      <  1:367515/149‑1 (MQ=255)
                  ctATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTa                                                                                                                                   <  4:2551/149‑1 (MQ=255)
                  ctATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTa                                                                                                                                   <  1:428396/149‑1 (MQ=255)
                   tATGTGGGTAAAGCGTCTCATTAGCCGCGCGAACCTCTGCAACGGTAGATCGTTCATAGAAAAAATACCTTAGTTTCAAGTGAGTTGTTGCCGTCAGCTTGAAAAAA‑CGGGCCACCTAT‑GCCCCAAATTCTGAAACTAGAATGCATTAg                                                                                                                                  >  2:584284/1‑149 (MQ=255)
                        gggTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACg                                                                                                                             >  2:488854/1‑149 (MQ=255)
                               gCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGAccc                                                                                                                      >  1:120675/1‑149 (MQ=255)
                                ccTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCa                                                                                                                     >  2:102672/1‑149 (MQ=255)
                                  tctcATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAgg                                                                                                                   <  2:18154/149‑1 (MQ=255)
                                  tctcATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAgg                                                                                                                   >  4:231056/1‑149 (MQ=255)
                                    tcATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGgcg                                                                                                                 >  2:163638/1‑149 (MQ=255)
                                       ttAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTc                                                                                                              <  3:541171/149‑1 (MQ=255)
                                         aGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGa                                                                                                            <  2:153519/149‑1 (MQ=255)
                                          gCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGAt                                                                                                           >  4:180905/1‑149 (MQ=255)
                                          gCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGAt                                                                                                           <  1:294218/149‑1 (MQ=255)
                                           ccGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATg                                                                                                          >  3:131819/1‑149 (MQ=255)
                                            tgaaacgtaaagacgtagcacgttacacccagctcatcgagcgcctgggtctgcgtcgctaattcttgcgagtttcagAAAAAGGGGCCACTCAG‑GCCCCCTTTTCTGaaa                                                                                                                                                >  2:363156‑M1/79‑111 (MQ=255)
                                            tgaaacgtaaagacgtagcacgttacacccagctcatcgagcgcctgggtctgcgtcgctaattcttgcgagtttcagAAAAAGGGGCCACTCAG‑GCCCCCTTTTCTGaaa                                                                                                                                                <  1:363156‑M1/33‑1 (MQ=255)
                                            cgcgcgAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGa                                                                                                         <  2:120675/149‑1 (MQ=255)
                                             ctgaaacgtaaagacgtagcacgttacacccagctcatcgagcgcctgggtctgcgtcgctaattcttgcgagtttcagaaaaggggccactcaggcccccttttCTGAAACTCGCaa                                                                                                                                         >  3:667752‑M2/106‑118 (MQ=255)
                                             ctgaaacgtaaagacgtagcacgttacacccagctcatcgagcgcctgggtctgcgtcgctaattcttgcgagtttcagaaaaggggccactcaggcccccttttCTGAAACTCGCaa                                                                                                                                         <  4:667752‑M2/13‑1 (MQ=255)
                                                 gAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTgg                                                                                                    <  3:567514/149‑1 (MQ=255)
                                                 gAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTgg                                                                                                    <  4:12168/149‑1 (MQ=255)
                                                 gAAACTCTGCAACGGAAGATCATTAATAGCAACAATACGTTAGATTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGCGCTgg                                                                                                    <  4:370245/149‑1 (MQ=255)
                                                     ctctGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGa                                                                                                         <  3:168236/140‑1 (MQ=255)
                                                     ctctGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGa                                                                                                         >  4:168236/1‑140 (MQ=255)
                                                     ctctGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGgtgt                                                                                                >  2:166976/1‑149 (MQ=255)
                                                        tGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAAc                                                                                             >  4:373734/1‑149 (MQ=255)
                                                        tGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAAc                                                                                             <  2:415630/149‑1 (MQ=255)
                                                        tGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAAc                                                                                             >  4:216505/1‑149 (MQ=255)
                                                         gCAACGGAAGATCATTCACAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACg                                                                                            >  1:463628/1‑149 (MQ=255)
                                                           aaCGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTg                                                                                          >  1:428579/1‑149 (MQ=255)
                                                             cGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCt                                                                                        <  1:488854/149‑1 (MQ=255)
                                                              ggAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTc                                                                                                                                                     >  4:265963/1‑87 (MQ=255)
                                                              ggAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTc                                                                                                                                                     <  3:265963/87‑1 (MQ=255)
                                                                 aGATCATTCATAGCAACAATACATTAGTTTCGAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGTCCACTCAG‑GCCCGCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGAt                                                                                                           <  4:650760/126‑1 (MQ=255)
                                                                 aGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGAt                                                                                                           >  3:650760/1‑126 (MQ=255)
                                                                    tcattcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCtt                                                                                 <  1:43385/149‑1 (MQ=255)
                                                                    tcattcatAGCAACAATACATTAGTTTCAAGTGAATTGCTGCCGGCGGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAATTCGCAAGAATTGGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCtt                                                                                 >  4:419546/1‑149 (MQ=255)
                                                                      attcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTa                                                                               >  1:375207/1‑149 (MQ=255)
                                                                      attcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTa                                                                               <  3:336461/149‑1 (MQ=255)
                                                                       ttcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGAc                                                                                                                              >  2:503286/1‑101 (MQ=255)
                                                                       ttcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGAc                                                                                                                              <  1:503286/101‑1 (MQ=255)
                                                                       ttcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTAc                                                                              >  2:387540/1‑149 (MQ=255)
                                                                       ttcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTAc                                                                              <  1:163638/149‑1 (MQ=255)
                                                                       ttcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTAc                                                                              >  3:320918/1‑149 (MQ=255)
                                                                            aGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTc                                                                         >  1:211446/1‑149 (MQ=255)
                                                                            aGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTc                                                                         <  1:105567/149‑1 (MQ=255)
                                                                              caacaaTACATTAGTTTCCAGTGAATTGATGCCGTCAGCTTGAAAAAA‑GGGGCCATTCAG‑GCCTCCTTTTCTCATACTTGCTACTATAAGCGACGGAGACCCTGGCGCTAGATTAGCAGGGTGTAACGTGCTGCGTCTTTCTGTTTTAg                                                                       <  2:223795/149‑1 (MQ=255)
                                                                                  aaTACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAg                                                                   <  4:59375/149‑1 (MQ=255)
                                                                                       aTTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAg                                                              >  4:220851/1‑149 (MQ=255)
                                                                                        ttAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGc                                                             >  1:686831/1‑149 (MQ=255)
                                                                                        ttAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGc                                                             <  3:623852/149‑1 (MQ=255)
                                                                                            tttCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGtt                                                         >  4:376217/1‑149 (MQ=255)
                                                                                                cAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTacg                                                     >  4:161135/1‑149 (MQ=255)
                                                                                                cAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTacg                                                     >  3:75952/1‑149 (MQ=255)
                                                                                                 aGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTacga                                                    <  4:509231/149‑1 (MQ=255)
                                                                                                       ttGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTga                                              <  2:463628/149‑1 (MQ=255)
                                                                                                           tgcCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGaaa                                          <  3:546625/149‑1 (MQ=255)
                                                                                                           tgcCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGaaa                                          >  4:408763/1‑149 (MQ=255)
                                                                                                             ttgcgagtttcagAAAA‑GGGGGC‑CTGAGTGGCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAg                                                                       <  4:667752‑M1/105‑1 (MQ=255)
                                                                                                             ttgcgagtttcagAAAA‑GGGGGC‑CTGAGTGGCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAg                                                                       >  3:667752‑M1/14‑118 (MQ=255)
                                                                                                              cGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCa                                       <  3:220851/149‑1 (MQ=255)
                                                                                                               gTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCAt                                      <  2:428579/149‑1 (MQ=255)
                                                                                                                     tttcagaaaagggggcctgagtggcccctttttCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCa                                                                        >  2:363156‑M2/34‑111 (MQ=255)
                                                                                                                     tttcagaaaagggggcctgagtggcccctttttCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCa                                                                        <  1:363156‑M2/78‑1 (MQ=255)
                                                                                                                     ttGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCgcag                                >  1:384614/1‑149 (MQ=255)
                                                                                                                     ttGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCgcag                                >  4:448523/1‑149 (MQ=255)
                                                                                                                         aaaaa‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGa                            <  2:583466/149‑1 (MQ=255)
                                                                                                                         aaaaa‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGa                            >  3:155612/1‑149 (MQ=255)
                                                                                                                          gaaaagggggcctgagtggcccctttttCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGcagcag                             >  1:375327‑M2/29‑149 (MQ=255)
                                                                                                                          gaaaagggggcctgagtggcccctttttCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGcagcag                             >  1:216379‑M2/29‑149 (MQ=255)
                                                                                                                          AAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGAc                           <  3:464493‑M1/149‑1 (MQ=255)
                                                                                                                          AAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGAc                           >  3:376217‑M1/1‑149 (MQ=255)
                                                                                                                           AAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTAGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGAcc                          <  4:604182‑M1/149‑1 (MQ=255)
                                                                                                                             aagggggcctgagtggcccccttttCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGAcc                          >  4:200103‑M2/26‑149 (MQ=255)
                                                                                                                             aagggggcctgagtggcccccttttCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGAcc                          >  4:485060‑M2/26‑149 (MQ=255)
                                                                                                                                   ccACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACgg                   <  2:471974/149‑1 (MQ=255)
                                                                                                                                     aCTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCt                 >  3:129911/1‑149 (MQ=255)
                                                                                                                                      cTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCtg                <  4:220560/149‑1 (MQ=255)
                                                                                                                                       tCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTac                                                      >  4:289701/1‑110 (MQ=255)
                                                                                                                                       tCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTac                                                      <  3:289701/110‑1 (MQ=255)
                                                                                                                                         aG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGt                                                          <  1:659299/104‑1 (MQ=255)
                                                                                                                                         aG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGt                                                          >  2:659299/1‑104 (MQ=255)
                                                                                                                                         aG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCTgtgg             <  2:192498/149‑1 (MQ=255)
                                                                                                                                              ccccttttCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCTGTGGTGAt         >  2:56551‑M2/9‑149 (MQ=255)
                                                                                                                                                   tttCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCTGTGGTGATCtttt    >  1:643374‑M2/4‑149 (MQ=255)
                                                                                                                                                     tCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCTGTGGTGATCtttttt  <  2:384614‑M2/148‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                   
GACAACCCTAACCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAA‑GGGGCCACTCAG‑GCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCTGTGGTGATCTTTTTT  >  NC_000913/3311251‑3311546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.