New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1512011 =	42 (0.640)	3 (0.050)	3/262	NT	6.1%	coding (358/1146 nt)	ydcS	putative ABC transporter periplasmic binding protein
	?	NC_000913	1512028 =	51 (0.790)					coding (375/1146 nt)	ydcS	putative ABC transporter periplasmic binding protein

AAAACCGCCGCGACTTCCGATGAAATGGTCAGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTTTGTTGA  >  NC_000913/1511864‑1512159                                                                                                                                                    |                                                                                                                                                      aaaaCCGCCGCGACTTCCGATGAAATGGTCAGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAAc                                                                                                                                                      <  1:10332/149‑1 (MQ=255) aaaaCCGCCGCGACTTCCGATGAAATGGTCAGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAAc                                                                                                                                                      <  3:49957/149‑1 (MQ=255) aaaaCCGCCGCGACTTCCGATGAAATGGTCAGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAAc                                                                                                                                                      >  3:509727/1‑149 (MQ=255)                  cGATGAAATGGTCAGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTgg                                                                                                                                    >  1:480246/1‑149 (MQ=255)                  aacaaaaaccacttgccagctatccggcggcgtcgggaaggttttagtgttgtacatcagcaggttcggcccccattggtaaggtgtgccgtaaactttgccgccaacattaaaccagtcgcctttaaccACGCTCG‑ATCCGCGCGTgg                                                                                                                                    >  4:402507‑M1/131‑149 (MQ=255)                         aTGGTCAGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAgg                                                                                                                             >  1:436183/1‑149 (MQ=255)                          tGGTCAGTCTGATGATCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGc                                                                                                                            <  2:335/149‑1 (MQ=255)                          tGGTCAGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGc                                                                                                                            <  2:40660/149‑1 (MQ=255)                               aGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTg                                                                                                                       <  1:347206/149‑1 (MQ=255)                                gTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTgg                                                                                                                      >  3:256785/1‑149 (MQ=255)                                 tCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGt                                                                                                                     >  4:453410/1‑149 (MQ=255)                                    gatgaCCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTa                                                                                                                  >  4:289581/1‑149 (MQ=255)                                       gaCCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATg                                                                                                               >  4:170851/1‑149 (MQ=255)                                         ccAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGTGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGtt                                                                                                             <  4:546957/149‑1 (MQ=255)                                           aaaGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTgg                                                                                                           >  4:515219/1‑149 (MQ=255)                                            aaGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTggc                                                                                                          <  3:515219/149‑1 (MQ=255)                                                   ttACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAg                                                                                                   <  1:48210/149‑1 (MQ=255)                                                   ttACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAg                                                                                                   >  2:145216/1‑149 (MQ=255)                                                        aTCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTAc                                                                                              >  3:490746/1‑149 (MQ=255)                                                              ttACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGcaca                                                                                        >  3:243369/1‑149 (MQ=255)                                                                     aTCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTAcc                                                                                 >  2:540189/1‑149 (MQ=255)                                                                     aTCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTAcc                                                                                 >  2:449143/1‑149 (MQ=255)                                                                           cGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATggg                                                                           <  1:400541/149‑1 (MQ=255)                                                                           cGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATggg                                                                           <  1:14034/149‑1 (MQ=255)                                                                                 cTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGa                                                                     >  1:104419/1‑149 (MQ=255)                                                                                    gCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAAcc                                                                  <  4:496163/149‑1 (MQ=255)                                                                                        cGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACctgct                                                              <  2:525796/149‑1 (MQ=255)                                                                                          tttGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGa                                                            >  2:67152/1‑149 (MQ=255)                                                                                           ttGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGAt                                                           <  1:574203/149‑1 (MQ=255)                                                                                             gATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGt                                                         >  2:518077/1‑149 (MQ=255)                                                                                                           gcgTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAAcc                                           <  3:439072/149‑1 (MQ=255)                                                                                                               gCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTcc                                       <  3:507938/149‑1 (MQ=255)                                                                                                                  gcctaatAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCgt                                    <  4:490746/143‑2 (MQ=255)                                                                                                                  gCCGATTAATACCGCATTGATTCCTAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGa                                    >  4:215503/1‑149 (MQ=255)                                                                                                                     gATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGAcgc                                 >  2:319711/1‑149 (MQ=255)                                                                                                                      aTTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGAcgcc                                >  2:247477/1‑149 (MQ=255)                                                                                                                               gCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAg                       >  4:93908/1‑149 (MQ=255)                                                                                                                                 aTTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCt                     >  1:302099/1‑149 (MQ=255)                                                                                                                                    gATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGc                  <  4:23492/149‑1 (MQ=255)                                                                                                                                     aTTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCa                 <  2:8925/149‑1 (MQ=255)                                                                                                                                      ttCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCaa                <  4:509727/149‑1 (MQ=255)                                                                                                                                      ttCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCaa                >  1:27443/1‑149 (MQ=255)                                                                                                                                          cAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTaaaa                                             <  1:102213/116‑1 (MQ=255)                                                                                                                                          cAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTaaaa                                             >  2:102213/1‑116 (MQ=255)                                                                                                                                            ctttaaccACGCGCGGATC‑GAGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGcac                                                                                         <  3:89072‑M1/62‑1 (MQ=255)                                                                                                                                            ctttaaccACGCGCGGATC‑GAGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGcac                                                                                         >  4:89072‑M1/9‑70 (MQ=255)                                                                                                                                            aCTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGtt          <  2:302099/149‑1 (MQ=255)                                                                                                                                             cTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGttt         >  1:113893/1‑149 (MQ=255)                                                                                                                                                gAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAGTGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGAt                                                           >  4:511345/1‑96 (MQ=255)                                                                                                                                                gAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGAt                                                           <  3:511345/96‑1 (MQ=255)                                                                                                                                                 aaaaCGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTttgt     <  1:518077/149‑1 (MQ=255)                                                                                                                                                 aaaaCGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTttgt     <  1:165805/149‑1 (MQ=255)                                                                                                                                                 aaaaCGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTttgt     >  2:181195/1‑149 (MQ=255)                                                                                                                                                 aaaaCGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTttgt     <  1:67152/149‑1 (MQ=255)                                                                                                                                                  aaaCGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACGCCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTttgtt    <  1:352111/149‑1 (MQ=255)                                                                                                                                                   aaCGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTttgttg   <  1:202420/149‑1 (MQ=255)                                                                                                                                                    ACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTTTGTTGa  >  1:326999‑M1/1‑149 (MQ=255)                                                                                                                                                    ACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTTTGTTGa  >  1:145216‑M1/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                      AAAACCGCCGCGACTTCCGATGAAATGGTCAGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGTGCAGCCGATTAATACCGCATTGATTCCCAACTGGAAAACGCTCG‑ATCCGCGCGTGGTTAAAGGCGACTGGTTTAATGTTGGCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCGGATAGCTGGCAAGTGGTTTTTGTTGA  >  NC_000913/1511864‑1512159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.