New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	111593 =	87 (0.550)	8 (0.050)	8/252	NT	8.7%	noncoding (164/200 nt)	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
	?	NC_000913	111626 =	86 (0.570)					noncoding (197/200 nt)	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site

AACTGGCCTGTTGCTAAGGAGTAAAAATGTCAGAAACTATTACGGTGAATTGCCCAACCTGCGGGAAAACGGTGGTGTGGGGTGAAATCAGCCCGTTTCGGCCATTTTGCTCCAAACGTTGTCAGCTGATCGACCTCGGAGAATGGGCTGCTGAAGAAAAACGAATCCCCAGCAGTGGCGATCTTTCCGAAAGCGATGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATAAGACGCGGACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/111872‑111593 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAATGGCCGAAACGGGCTGATTTCACCCCACACCACCGTTTTCCCGCAGGTTGGGCAATTCACCGTAATAGTTTCTGACATTTTTACTCCTTAGCAACAGGCCAGTTCGAAATCCAGACGTTCCGGTACCTG  >  NC_000913/111626‑111897                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AACTGGCCTGTTGCTAAGGAGTAAAAATGTCAGAAACTATTACGGTGAATTGCCCAACCGGCGGGAAAACGGTGGTGTGGGGTGAAATCAGCCCGTTTCGGCCATTTTGCTCCAAACGTTGTCAGCTGATCGACCTCGGAGAATGGGCTGCTGAAGAAAAACGAATCCCCAGCAGTGGCGATCTTTCCGAAAGCGATGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATAAGACGCGGACAGCGTCGCAT                                                                                                                                                                                                                                                                                        <  2:40834/275‑1                                                                                                                                              AATGGGCTGCTGAAGAAAAACGAATCCCCAGCAGTGGCGATCTTTCCGAAAGCGATGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGCCT‑ACGTGC                                                                                                                                                                                                                                                                          <  6:166672/148‑1                                                                                                                                                  GGCTGCTGAAGAAAAACGAATCCCCAGCGGTGGCGATCTTTCAGAAAGCGATGCCTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATGCGACGCTGTCCGCGTCTTATCAG                                                                                                                                                                                                                                                                                     <  7:715687/133‑1                                                                                                                                                  GGCTGCTGAAGAAAAACGAATCCCCAGCAGTGGCGATCTTTCCGAAAGCGATGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATGCGACGCTGTCCGCGTCTTATCAG                                                                                                                                                                                                                                                                                     >  8:715687/1‑133                                                                                                                                                                                      TCTTTCCGAAAGCGATGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATAAGACGCGGACAGCGTCGCATC                                                                                                                                                                                                                                                                                       <  7:1057722/95‑1                                                                                                                                                                                      TCTTTCCGAAAGCGATGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATAAGACGCGGACAGCGTCGCATC                                                                                                                                                                                                                                                                                       >  8:1057722/1‑95                                                                                                                                                                                                                AAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATAAGACGCGGACAGCGTCGCAT                                                                                                                                                                                                                                                                                        <  8:1137872/68‑1                                                                                                                                                                                                                AAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATAAGACGCGGACAGCGTCGCAT                                                                                                                                                                                                                                                                                        >  7:1137872/1‑68                                                                                                                                                                                                                       AAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATAAGACGCGGACAGCGTCGCATCA                                                                                                                                                                                                                                                                                      >  6:232902/1‑63                                                                                                                                                                                                                       AAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATAAGACGCGGACAGCGTCGCATCA                                                                                                                                                                                                                                                                                      <  5:232902/63‑1                                                                                                                                                                                                                                                     T‑AGGCCTGATAAGACGCGGACAGCGTCGCATCAGGCATCTTGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCG                                                                                                                                                                   <  5:166672/148‑1                                                                                                                                                                                                                                                            TGATAAGACGCGGACAGCGTCGCATCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGAT                                                                                                                                                                                                               >  6:79488/1‑97                                                                                                                                                                                                                                                            TGATAAGACGCGGACAGCGTCGCATCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGAT                                                                                                                                                                                                               >  7:531854/1‑97                                                                                                                                                                                                                                                            TGATAAGACGCGGACAGCGTCGCATCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGAT                                                                                                                                                                                                               <  5:79488/97‑1                                                                                                                                                                                                                                                            TGATAAGACGCGGACAGCGTCGCATCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGAT                                                                                                                                                                                                               <  8:531854/97‑1                                                                                                                                                                                                                                                               TAAGACGCGGACAGCGTCGCATCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTC                                                                                                                                                                                                                                     <  7:736516/72‑1                                                                                                                                                                                                                                                               TAAGACGCGGACAGCGTCGCATCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTC                                                                                                                                                                                                                                     >  8:736516/1‑72                                                                                                                                                                                                                                                                         tccgggacttttaAGGCGT‑AAGTGCGGATCCCGAAAAAAGTCAATGCTTTGGTTGTTCGCTCCAGTCTTCGGTTTCGGAAAGACTGCCACTGCGGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGAGCAGCTGACAACGTTTGGAGCAAAATGGCCGAAACGGGCTGATTTCACCCCACACAACCGTTTTCCCGCAGGTTGGGCAATTCACCGTAATAGTTTCTGACATTTTTACTCCTTAGCAACAGGCCAGTTCGAAATCCAGA                <  4:168544/262‑1                                                                                                                                                                                                                                                                                   ATCAGGCCT‑ACGTGCGTCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAATGGCCGAAACGGGCTGATTTCACCCCACACCACCGTTTTCCCGCAGGTTGGGCAATTCACCGTAATAGTTTCTGACATTTTTACTCCTTAGCAACAGGCCAGTTCGAAATCCAGACGTTCCGGTA      >  2:330858/1‑275                                                                                                                                                                                                                                                                                   ATCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGTTGACAACGTTTGGAGCAAAATGGCCGAAACGGGCTGATTTCACCCCACACCACCGTTTTCCCGCAGGTTGGGCAATTCACCGTAATAGTTTCTGACATTTTTACTCCTTAGCCAAAGGCCAGTTCGAAATCCAGACGTTCCGGTA      >  1:34551/1‑275                                                                                                                                                                                                                                                                                   ATCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAACATGGCCGAAACGGGCTGATTTCACACCACACCACCGTTTTCCCTCCGGTTGGGCAATTCACGGTAATAGTTTCTTCAATTTTTACTCCTTAGCAACAGGGCAGTTCGAAACCCAGCCGTTCCGttc      >  4:391184/1‑272                                                                                                                                                                                                                                                                                    TCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGA                                                                                                                                                                  >  6:473938/1‑118                                                                                                                                                                                                                                                                                    TCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGA                                                                                                                                                                  <  5:473938/118‑1                                                                                                                                                                                                                                                                                    TCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTC                                                                                                                                                                                             <  7:434345/91‑1                                                                                                                                                                                                                                                                                    TCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTC                                                                                                                                                                                             <  5:882/91‑1                                                                                                                                                                                                                                                                                    TCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTC                                                                                                                                                                                             >  8:434345/1‑91                                                                                                                                                                                                                                                                                    TCAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTC                                                                                                                                                                                             >  6:882/1‑91                                                                                                                                                                                                                                                                                     CAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAA                                                                                                                                   >  6:674790/1‑148                                                                                                                                                                                                                                                                                     CAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTT                                                                                                                                             >  6:1260/1‑138                                                                                                                                                                                                                                                                                     CAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTT                                                                                                                                             <  5:1260/138‑1                                                                                                                                                                                                                                                                                     CAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCG                                                                                                                                                                   <  8:1001764/116‑1                                                                                                                                                                                                                                                                                     CAGGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTAGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCG                                                                                                                                                                   >  7:1001764/1‑116                                                                                                                                                                                                                                                                                       GGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAATGGCCGAAACGGGCTGATTTCACCCCACACCACCGTTTTCCCGCAGGTTGGGCAATTCACCGTAATAGTTTCTGACATTTTTACTCCTTAGCAACAGGCCAGTTCGAAATCCAGACGTTCCGGTACCTG  <  2:50546/275‑1                                                                                                                                                                                                                                                                                       GGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTT                                                                                                                                                                                       <  6:42138/94‑1                                                                                                                                                                                                                                                                                       GGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTT                                                                                                                                                                                       >  7:608544/1‑94                                                                                                                                                                                                                                                                                       GGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTT                                                                                                                                                                                       >  5:42138/1‑94                                                                                                                                                                                                                                                                                       GGCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTT                                                                                                                                                                                       <  8:608544/94‑1                                                                                                                                                                                                                                                                                        GCCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAATGG                                                                                                                                <  5:674790/148‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AACTGGCCTGTTGCTAAGGAGTAAAAATGTCAGAAACTATTACGGTGAATTGCCCAACCTGCGGGAAAACGGTGGTGTGGGGTGAAATCAGCCCGTTTCGGCCATTTTGCTCCAAACGTTGTCAGCTGATCGACCTCGGAGAATGGGCTGCTGAAGAAAAACGAATCCCCAGCAGTGGCGATCTTTCCGAAAGCGATGACTGGAGCGAAGAACCAAAGCAGTGACATTTGTCTGATGCCGCACGT‑AGGCCTGATAAGACGCGGACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/111872‑111593 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCT‑ACGTGCGGCATCAGACAAATGTCACTGCTTTGGTTCTTCGCTCCAGTCATCGCTTTCGGAAAGATCGCCACTGCTGGGGATTCGTTTTTCTTCAGCAGCCCATTCTCCGAGGTCGATCAGCTGACAACGTTTGGAGCAAAATGGCCGAAACGGGCTGATTTCACCCCACACCACCGTTTTCCCGCAGGTTGGGCAATTCACCGTAATAGTTTCTGACATTTTTACTCCTTAGCAACAGGCCAGTTCGAAATCCAGACGTTCCGGTACCTG  >  NC_000913/111626‑111897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.