| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,985,112 | C→G | 7.6% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,985,112 | 0 | C | G | 7.6% | 442.1 / 23.2 | 132 | intergenic (‑43/+27) | araG/araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (56/65); new base G (5/5); total (62/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.38e-02 | |||||||||||
Only 100 of 135 total aligned reads displayed.
CGGTCGTGTCGGAAAAGGACATTTCCTGCCCATTAATCACTACAGAACCCGTGGTTGGCGCATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGACAGTTCGCTCACCGCATCCACACC‑GTTAATGCCAATG > NC_000913/1984838‑1985376 | tCGTGTCGGAAAAGGACATTTCCTGCCCATTAATCACTACAGAACCCGTGGTTGGCGCATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGCTGCCGCGAAATGAGCGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATg > 2:215131/1‑275 (MQ=255) cTGCCCATTAATCACTACAGAACCCGTGGTTGGCGCATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑gggggtgtgaacgacca < 2:48268/274‑14 (MQ=255) cccATTAATCACTACAGAACCCGTGGTTGGCGCATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGCTGCCGCGAAATGAGAGATACGGGGTAGCCTGTTGCATAACGTCTCCGTGAATCATTGGTCGTTCACACCACCTCTTCATCATGCAGC‑GGGGAATTTTTACGGCAAAt > 2:541335/1‑274 (MQ=255) tACAGAACCCGTGGTTGGCGCATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCt > 2:309991/1‑274 (MQ=255) cccGTGGTTGGCGCCTAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTACTATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTAACGATGCGGCAAAATGAGCGATACGGGGTCGACTGTTGAATAAAGTCTCAGCGCAACACAGGTAGTTCACACCCCCTATTCCTCATCCAGA‑GGGGCATTTTNCCGGCNNACTATTTACCCCCCCAACCttt > 3:16937/1‑275 (MQ=255) cccGTGGTTGGCGCATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCtt > 2:474369/1‑274 (MQ=255) gTGGTTGGCGCATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCtttttt > 2:424406/1‑275 (MQ=255) gTGGTTGGCGCATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCGCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATAATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCtttttt > 1:127616/1‑275 (MQ=255) gcttAGTTGCCTCTGAGGCTTTTAAATGGGGGTACTGTTCCTACTGCACTTTCACCCAGCAACGCATGATCTTGACGGACCTAGCAGTCAAAAGTAATAACCGTCATCGCCTTAACGCCGGGAAACGTTCTACCGATGCCGCTAAATGAGAGAGACGGGGTAGACTGTTGCATAACGTCTCCGTTAATCACTGGTGGTTCTCACCCCCTTTGCGTCATGCAAC‑GGGGAAATGATCCGGCAAATTACTTGCCGCCTGAACCTTTTTTCGCCAGtt < 4:153210/271‑1 (MQ=255) cATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGtt < 2:165923/273‑1 (MQ=255) ccGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTaaa > 4:448707/1‑275 (MQ=255) ggctttttAATAGAGTTGATTTTCCTGNNCCATTTTCACCCCTCAACGCATGAACCTGCNCGGAAAAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGNGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGt < 3:66611/270‑1 (MQ=255) gATTTTTAAGGGAGTTGATTTTCCTTCGCCATTTTCACCCATCCACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAc < 2:521157/275‑1 (MQ=255) ttctAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACTTCTCCGTGAATCACTGGTCGTTCAAACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGAAAATTACTTACCGCCTAAACCTTTGTTCCCCATTTCTTCTTTAAAGTTTTCAcgc > 4:494176/4‑274 (MQ=255) agagTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTTATCAg > 1:63585/1‑275 (MQ=255) ccTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACAACCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCACGTTCTTCTTTAAAGTTTTCCCGCGTGATCAGTACCACGTCGGt > 4:24971/1‑275 (MQ=255) gcCAGTTTAACCCATCAACGAATGAACCTGACCGGCAGAGCAGGCAAAACTAANATCCNTCATCGCCTTAACGCCGGGAAACNTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGGCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAAttacttac < 4:541334/206‑1 (MQ=255) gAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAAtt > 4:76266/1‑261 (MQ=255) aaCCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCCGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGt > 1:128665/1‑275 (MQ=255) cTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTgg < 2:76267/261‑1 (MQ=255) ccGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCaga < 7:1008346/148‑1 (MQ=255) aGCAGTAAAAACTAATTTCCGTCAGCGACTTAAAGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTGGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTGTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTAccc < 2:373010/273‑1 (MQ=255) tCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTc < 6:48465/148‑1 (MQ=255) aaaaCTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttct > 1:144610/1‑187 (MQ=255) cTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcgc < 4:96260/201‑1 (MQ=255) atAATATCCGTCAGCGCCGTAACGCCGGGAAACGTTTTACCGATGCCGAGAAANGAGANAGACGGGGTAGACTGGTGCATAANGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTGTCCCGGCAAATTACTTACCGCCTAAACCTTTTTTCGCCAGTTCTTCTTTAAAGTTGTCACGCGTGAt < 4:540370/205‑1 (MQ=255) tAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTc > 4:232879/1‑196 (MQ=255) tatCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTc > 2:123725/1‑274 (MQ=255) atCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcgc < 2:232880/196‑1 (MQ=255) ccGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCaga < 7:888713/123‑1 (MQ=255) ttAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCag < 7:599730/111‑1 (MQ=255) ttAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCag > 8:599730/1‑111 (MQ=255) aaCGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGA‑gg < 7:1098052/112‑1 (MQ=255) aaCGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGA‑gg > 8:1098052/1‑112 (MQ=255) ggAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTc > 4:228724/1‑275 (MQ=255) aaaCGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGA‑gg > 7:1073024/1‑103 (MQ=255) aaaCGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGA‑gg < 8:1073024/103‑1 (MQ=255) aaaCGTTGTACCGATGCCGCGAAATGAGAGATACGGTGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCTGCAAATTACTTACCGCCTAAACCTTTTTGCGCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGt < 1:159973/272‑1 (MQ=255) gTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCt < 2:229760/275‑1 (MQ=255) tGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCa > 4:227999/1‑165 (MQ=255) cgggAAATTGGAGATACGGGGTAGGCTGTTGCATACCGTTTCAGTGAATAACTGGTCGTTCACACCCCCTCTGCATCNTGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGaa < 3:128665/272‑1 (MQ=255) gcgAAATGGGAGATACGGTGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCt < 1:15568/234‑1 (MQ=255) gcgAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTAc < 2:228000/165‑1 (MQ=255) gagagaTACGGGGTAGACTGTTGCATAACGTCTCCGTGTATCACTGGTCGTTCACACCCCCTCTGCATCATGc < 5:858471/73‑1 (MQ=255) gagagaTACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGc > 6:858471/1‑73 (MQ=255) tACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTaa < 5:29202/130‑1 (MQ=255) gtgaGACTGTTGAATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGTAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTGTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCt < 4:309990/272‑1 (MQ=255) ggTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGTGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCt < 1:57156/275‑1 (MQ=255) ggTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCt < 2:448708/275‑1 (MQ=255) ggTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAAA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCt < 4:474368/275‑1 (MQ=255) ggTAGACGGTTGCATAACTGATCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGAGGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTATTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGAGCAGTACCACGTCGGTAACTTCGGTAAATTGTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGGTGCCt < 4:156061/275‑1 (MQ=255) tAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGA‑ggg > 7:642089/1‑66 (MQ=255) tAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGA‑ggg < 8:642089/66‑1 (MQ=255) aCTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAACGTTGTCACGCGTAATCAGTACCACGTCGGTCACATCGGTAAATTTTGGCGGTTCAACGTCTTTTGATCCCAGGTTTNAAAGCTTTTCTCTGTATTTAAGACCTTGTGTGTCCGGGCTGTGCCGTTGGGAACCGTAAAAGCAGTTTGACtatgtt > 3:128858/1‑273 (MQ=255) aCTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGt > 4:222255/1‑180 (MQ=255) gTTGCATAACGGCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCttt < 4:395012/274‑1 (MQ=255) ttGCATAACGTCTCCGTGAATCACTTGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCttt < 2:222256/180‑1 (MQ=255) tGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCaa > 3:146497/1‑172 (MQ=255) gCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcg > 7:848748/1‑124 (MQ=255) gCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcg < 8:848748/124‑1 (MQ=255) cATAACGTCTCCGTGAATCACTGGTCGTTCACTCCCCCTCTGCATCATGCAGA‑GTGGAAATTTTCCGGCAAATTACTTACCGCCTAATCCTTTTTTCTCCAGTTCTGCTTTAAAGTTGTCGCGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGAc < 2:324203/274‑1 (MQ=255) cGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGACAGTTc > 4:38717/1‑274 (MQ=255) cGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGACAGTTc > 2:384907/1‑274 (MQ=255) tctcCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAAc > 1:83740/1‑82 (MQ=255) ctcCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCGGGGAACCGTAGCAGCCGGTTGCCTGTGCTTTAGACAGTTCGCta > 2:126069/1‑274 (MQ=255) ccGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGACAGTTCGCTCAc < 2:24971/275‑1 (MQ=255) cGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCttt < 3:83740/82‑1 (MQ=255) tGAATCACTGGTCGTTCACACCCCCTCTGCATCTTGCAGA‑GGGCAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACTTCGGTAACTTCGGTaaa < 8:83825/143‑1 (MQ=255) tGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTaaa < 6:398465/143‑1 (MQ=255) tGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTaaa > 7:83825/1‑143 (MQ=255) tGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTaaa > 5:398465/1‑143 (MQ=255) gAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttcttc < 8:397169/94‑1 (MQ=255) gAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttcttc > 7:397169/1‑94 (MQ=255) aaTCCCTGGTCGTTCACACCCCCTCTGCATCATTCAGG‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGACAGTTCGCTCACCGCa < 4:435000/274‑1 (MQ=255) tGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttcttc > 7:338005/1‑87 (MQ=255) tGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttcttc < 8:338005/87‑1 (MQ=255) tGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcg > 3:30256/1‑102 (MQ=255) tGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGACAGTTCGCTCACCGCATCcaca < 4:78767/274‑1 (MQ=255) ggTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGa < 7:771479/106‑1 (MQ=255) ggTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGa > 8:771479/1‑106 (MQ=255) ggTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCaa < 6:331842/148‑1 (MQ=255) cGTTCAACCCCCCTTCGCATCATGCAGA‑GGGGACTTTTTCCGTCAAATGAATTACCGCCTAAGCCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTAACGCGTGATCATGAACACGTCGGTAACTTCGGGAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGCTTTATAGCCATGTACGGCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGACAGTTCGCTAACCGCATCCACACC‑Gtt < 4:257417/275‑1 (MQ=255) ttccccTCTGCATGATGCAGAGGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCttttt < 7:210024/62‑1 (MQ=25) cccccTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttctt > 5:840882/1‑74 (MQ=255) cccccTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttctt > 5:431044/1‑74 (MQ=255) tcccTCTGCATCATGTATA‑GTGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTGCTCCAGTTCTTCTTTAAATTGGTCACGCTTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGACAGTTCGCTCACCGCATCCACACC‑GTTaatgccaat < 1:16937/274‑1 (MQ=255) ccTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCCGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGTTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGCGCTTGGCAGCAGGGAACCGTAAAAGCCGGTTGCTTGTGCTTTAGCCAGTTAGACCACCCCCTCC‑CACCAGTTaattccaatg > 4:121660/1‑274 (MQ=255) ccTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGt < 5:415596/97‑1 (MQ=255) ccTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGt > 6:415596/1‑97 (MQ=255) ctctGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTTCCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTAccc < 8:409423/148‑1 (MQ=255) tctGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCgg > 5:200810/1‑114 (MQ=255) tctGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCgg < 6:200810/114‑1 (MQ=255) tctGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTaaa > 5:62646/1‑118 (MQ=255) tctGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTaaa < 6:62646/118‑1 (MQ=255) tctGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCttt < 6:854865/139‑1 (MQ=255) ctGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGt > 6:1005255/1‑127 (MQ=255) tGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTNCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGACGCCTGtt > 3:140117/1‑219 (MQ=255) gCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCg < 6:732214/41‑1 (MQ=255) gCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCg > 5:732214/1‑41 (MQ=255) tcatGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTg < 8:145649/83‑1 (MQ=255) | CGGTCGTGTCGGAAAAGGACATTTCCTGCCCATTAATCACTACAGAACCCGTGGTTGGCGCATAGTTGCCGCTGAGGATTTTTAAGAGAGTTGATTTTCCTGCGCCATTTTCACCCATCAACGCATGAACCTGACCGGCATAGCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGA‑GGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCTACCCAGTTGTAAAGCATTTCGCTGGATTTATAGCCATGTACGTCCGGGCTTGGCAGCAGGGAACCGTAGAAGCCGGTTGCCTGTGCTTTAGACAGTTCGCTCACCGCATCCACACC‑GTTAATGCCAATG > NC_000913/1984838‑1985376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |