Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,585,156:1 +C 9.2% coding (1331/2280 nt) ydeP ← putative oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,585,1561.C 9.2% 401.4 / 38.4 98coding (1331/2280 nt)ydePputative oxidoreductase
Reads supporting (aligned to +/- strand):  ref base . (46/43);  new base C (5/4);  total (51/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.54e-01

Only 100 of 107 total aligned reads displayed.

CTTAGTGGCTACGTGTACCGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCA  >  NC_000913/1585011‑1585302
                                                                                                                                                  |                                                                                                                                                  
cTTAGTGGCTACGTGTACCGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTg‑ca                                                                                                                                                  >  3:52878/1‑148 (MQ=255)
  tAGTGGCTACGTGTACCGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTg‑cagc                                                                                                                                                >  2:326892/1‑148 (MQ=255)
   aGTGGCTACGTGTACCGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCT‑GCAATTg‑ccagca                                                                                                                                              <  1:926004/148‑6 (MQ=255)
      ggCTACGTGTACCGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTg‑ca                                                                                                                                                  <  2:349807/142‑1 (MQ=255)
      ggCTACGTGTACCGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTg‑ca                                                                                                                                                  >  1:349807/1‑142 (MQ=255)
                 ccGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATg                                                                                                                                 <  3:946427/148‑1 (MQ=255)
                 ccGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATg                                                                                                                                 <  4:25676/148‑1 (MQ=255)
                 ccGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATg                                                                                                                                 <  2:35454/148‑1 (MQ=255)
                         tCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTc                                                                                                                                           >  3:199972/1‑130 (MQ=255)
                         tCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTc                                                                                                                                           <  4:199972/130‑1 (MQ=255)
                         tCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTgggg                                                                                                                         >  4:37905/1‑148 (MQ=255)
                           tAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTg‑c                                                                                                                                                   <  3:262078/120‑1 (MQ=255)
                           tAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTg‑c                                                                                                                                                   >  4:262078/1‑120 (MQ=255)
                                  gTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCAt                                                                                                                <  4:52878/148‑1 (MQ=255)
                                   ttAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCa                                                                                                                                         >  2:329019/1‑122 (MQ=255)
                                   ttAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCa                                                                                                                                         <  1:329019/122‑1 (MQ=255)
                                   ttAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGagcgctat                                                                                                               >  4:453974/1‑141 (MQ=255)
                                            cAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCAcc                                                                                                      >  4:450306/1‑148 (MQ=255)
                                            cAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCAcc                                                                                                      >  2:599740/1‑148 (MQ=255)
                                               cgctcgctTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGGATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAg                                                                                                   <  3:981968/148‑1 (MQ=255)
                                                gctcgctTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGa                                                                                                  >  2:1103327/1‑148 (MQ=255)
                                                   cgctTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGa                                                                                                                      >  1:1126376/1‑125 (MQ=255)
                                                     ctTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGc                                                                                             <  1:599740/148‑1 (MQ=255)
                                                     ctTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGc                                                                                             <  3:450306/148‑1 (MQ=255)
                                                      ttCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGcc                                                                                            <  1:1103327/148‑1 (MQ=255)
                                                       tCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCa                                                                                           >  3:441753/1‑148 (MQ=255)
                                                         ccGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCT‑GCAATTg‑ccagc                                                                                                                                               <  4:427790/93‑5 (MQ=255)
                                                         ccGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCT‑GCAATTg‑ccagc                                                                                                                                               >  3:427790/1‑89 (MQ=255)
                                                          cGATCTGGCATTGCCAGCGCAAACTTGCCCCCCCTGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAgcg                                                                                                            <  2:884574/128‑1 (MQ=255)
                                                          cGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGGGGGGTGAAGCCATAgcg                                                                                                            >  1:884574/1‑128 (MQ=255)
                                                                ggCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTg                                                                                                                            <  3:746897/106‑1 (MQ=255)
                                                                ggCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTg                                                                                                                            >  4:746897/1‑106 (MQ=255)
                                                                ggCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTg                                                                                  <  3:37905/148‑1 (MQ=255)
                                                                    ttGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAgg                                                                                                                                       <  2:346452/91‑1 (MQ=255)
                                                                    ttGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAgg                                                                                                                                       >  1:346452/1‑91 (MQ=255)
                                                                    ttGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGa                                                                              <  4:441753/148‑1 (MQ=255)
                                                                               aaaTTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCgg                                                                   <  1:326892/148‑1 (MQ=255)
                                                                                   tGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGAt                                                               >  2:219633/1‑148 (MQ=255)
                                                                                       ccccATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCg                                                           >  4:584062/1‑148 (MQ=255)
                                                                                                     aTGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAg                                                                                                                    >  4:86144/1‑77 (MQ=255)
                                                                                                     aTGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTg                                                                                  >  3:937743/1‑111 (MQ=255)
                                                                                                     aTGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTg                                                                                  >  1:464737/1‑111 (MQ=255)
                                                                                                     aTGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTg                                                                                  <  2:464737/111‑1 (MQ=255)
                                                                                                     aTGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTg                                                                                  <  4:937743/111‑1 (MQ=255)
                                                                                                     aTGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGcc                                             >  1:1072672/1‑148 (MQ=255)
                                                                                                     aTGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGcc                                             >  2:1020981/1‑148 (MQ=255)
                                                                                                       gCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCt                                           <  3:584062/148‑1 (MQ=255)
                                                                                                       gCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCt                                           <  2:1072672/148‑1 (MQ=255)
                                                                                                                tGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACCCTGCAGACGGTTTCTCAGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  <  1:219633/148‑1 (MQ=255)
                                                                                                                  ccccGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCgg                                                                   <  1:778213/113‑1 (MQ=255)
                                                                                                                  ccccGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCgg                                                                   >  2:778213/1‑113 (MQ=255)
                                                                                                                   cccGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTCGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTtct                                                                      >  2:965552/1‑109 (MQ=255)
                                                                                                                   cccGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAAGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTtct                                                                      <  1:965552/109‑1 (MQ=255)
                                                                                                                    ccGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAgtg                              >  2:986007/1‑148 (MQ=255)
                                                                                                                     cGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGa                                                                                                                                >  2:1112405/1‑49 (MQ=255)
                                                                                                                     cGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGa                                                                                                                                <  1:1112405/49‑1 (MQ=255)
                                                                                                                     cGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAgtgt                             <  1:986007/148‑1 (MQ=255)
                                                                                                                       tACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCgg                                                                   >  4:321204/1‑108 (MQ=255)
                                                                                                                       tACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCgg                                                                   <  3:321204/108‑1 (MQ=255)
                                                                                                                            atTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACg                                                                                                <  3:1119546/74‑1 (MQ=255)
                                                                                                                            atTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACg                                                                                                >  4:1119546/1‑74 (MQ=255)
                                                                                                                            atTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTa                      >  4:907575/1‑148 (MQ=255)
                                                                                                                              tgcttgcATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  >  4:503214/1‑134 (MQ=255)
                                                                                                                              tgcttgcATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  <  3:503214/134‑1 (MQ=255)
                                                                                                                              tgcttgcATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGt                    <  1:1020981/148‑1 (MQ=255)
                                                                                                                                cttgcATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAg                                                                                              >  3:1041456/1‑72 (MQ=255)
                                                                                                                                cttgcATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAg                                                                                              <  4:1041456/72‑1 (MQ=255)
                                                                                                                                 ttgcATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  <  2:19476/131‑1 (MQ=255)
                                                                                                                                 ttgcATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  >  1:19476/1‑131 (MQ=255)
                                                                                                                                  tgcATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGc                >  2:983703/1‑148 (MQ=255)
                                                                                                                                   gcATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCa               >  2:598194/1‑148 (MQ=255)
                                                                                                                                    cATGCT‑GCAATTGCCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCg                                               >  3:422265/1‑115 (MQ=255)
                                                                                                                                     aTGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGt                                         >  1:947952/1‑120 (MQ=255)
                                                                                                                                     aTGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGt                                         <  2:947952/120‑1 (MQ=255)
                                                                                                                                     aTGCT‑GCAATTGCCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  <  4:250365/127‑1 (MQ=255)
                                                                                                                                     aTGCT‑GCAATTGCCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAgtgt                             >  2:784166/1‑132 (MQ=255)
                                                                                                                                     aTGCT‑GCAATTGCCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAgtgt                             <  1:784166/132‑1 (MQ=255)
                                                                                                                                     aTGCT‑GCAATTGCCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGa             >  4:134426/1‑148 (MQ=255)
                                                                                                                                       tgctgCAATTGCCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  <  2:878789/122‑1 (MQ=255)
                                                                                                                                       tgctgCAATTGCCAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  >  1:878789/5‑126 (MQ=255)
                                                                                                                                         tGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAg                                                                                                              >  4:197636/1‑47 (MQ=255)
                                                                                                                                         tGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAg                                                                                                              <  3:197636/47‑1 (MQ=255)
                                                                                                                                          ggCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAg                     >  3:660290/1‑135 (MQ=255)
                                                                                                                                          ggCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATAccc        >  2:923957/1‑148 (MQ=255)
                                                                                                                                          ggCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACACTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAg                     <  4:660290/135‑1 (MQ=255)
                                                                                                                                           gCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACg                                                        >  2:89291/1‑99 (MQ=255)
                                                                                                                                           gCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACg                                                        <  1:89291/99‑1 (MQ=255)
                                                                                                                                           gCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTg                   >  3:739251/1‑136 (MQ=255)
                                                                                                                                           gCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTg                   <  4:739251/136‑1 (MQ=255)
                                                                                                                                           gCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCg       >  2:252533/1‑148 (MQ=255)
                                                                                                                                           gCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCg       >  2:448467/1‑148 (MQ=255)
                                                                                                                                            cAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAg                     >  2:38723/1‑133 (MQ=255)
                                                                                                                                            cAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAg                     <  1:38723/133‑1 (MQ=255)
                                                                                                                                            cAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTg                   >  3:5569/1‑135 (MQ=255)
                                                                                                                                            cAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTg                   <  4:5569/135‑1 (MQ=255)
                                                                                                                                               ttG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGccc                                            <  1:608215/107‑1 (MQ=255)
                                                                                                                                               ttG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGccc                                            >  2:608215/1‑107 (MQ=255)
                                                                                                                                               ttG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  >  2:943313/1‑117 (MQ=255)
                                                                                                                                               ttG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTag                                  <  1:943313/117‑1 (MQ=255)
                                                                                                                                                tG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCa  >  4:252242/1‑148 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
CTTAGTGGCTACGTGTACCGCCAAATCTAATTGCGTTAACGGTACAGCGCTCGCTTCCCGATCTGGCATTGCCAGCGCAAAATTGCCCCCCATGCAGATCAATGCTCGAGCCTGCCCCGTACATATTGCTTGCATGCTGGCAATTG‑CAGCATGTCCAGGTGCATGAGGTGGGGTGAAGCCATAGCGCTCACCCAGACGAGCCAGAAACTCTGCAGACGGTTTCTCGGTGATACCGACGGTTCGGTCGCCCTGTACATTAGAGTGTCCACGTAGTGGGCAGATACCCGCACCA  >  NC_000913/1585011‑1585302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑